Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:40:59 (1350206): wrapper (7.7.26015): starting
22:40:59 (1350206): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 22:40:59] Arguments: --nthreads 3
[2025-11-27 22:40:59] Threads: 3
[2025-11-27 22:40:59] Checking for CVMFS
[2025-11-27 22:40:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 22:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 22:40:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 22:41:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 22:41:00] 2.9.2.0 3803052 13217 70452 153385 3 81 35406514 36864001 0 130560 1 4740688 99.939 645233 829 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 22:41:00] CVMFS is ok
[2025-11-27 22:41:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 22:41:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 22:41:00] Further information can be found at the LHC@home message board.
[2025-11-27 22:41:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 22:41:00] Checking for apptainer binary...
[2025-11-27 22:41:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 22:41:00] Running /usr/bin/apptainer --version
[2025-11-27 22:41:00] apptainer version 1.4.1-1.1
[2025-11-27 22:41:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 22:41:00] thA333
[2025-11-27 22:41:00] apptainer works
[2025-11-27 22:41:00] Set ATHENA_PROC_NUMBER=3
[2025-11-27 22:41:00] Set ATHENA_CORE_NUMBER=3
[2025-11-27 22:41:00] Starting ATLAS job with PandaID=6896243467
[2025-11-27 22:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:27:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | job 6896243467 has completed (purged errors)
[2025-11-28 07:27:04] 2025-11-28 06:26:13,450 | INFO     | overall cleanup function is called
[2025-11-28 07:27:04] 2025-11-28 06:26:14,458 | INFO     | --- collectZombieJob: --- 10, [1360376]
[2025-11-28 07:27:04] 2025-11-28 06:26:14,458 | INFO     | zombie collector waiting for pid 1360376
[2025-11-28 07:27:04] 2025-11-28 06:26:14,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:27:04] 2025-11-28 06:26:14,459 | INFO     | collected zombie processes
[2025-11-28 07:27:04] 2025-11-28 06:26:14,459 | INFO     | will attempt to kill all subprocesses of pid=1360376
[2025-11-28 07:27:04] 2025-11-28 06:26:14,498 | INFO     | process IDs to be killed: [1360376] (in reverse order)
[2025-11-28 07:27:04] 2025-11-28 06:26:14,522 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:27:04] 2025-11-28 06:26:14,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:27:04] 2025-11-28 06:26:14,524 | INFO     | did not find any defunct processes belonging to 1360376
[2025-11-28 07:27:04] 2025-11-28 06:26:14,525 | INFO     | did not find any defunct processes belonging to 1360376
[2025-11-28 07:27:04] 2025-11-28 06:26:14,525 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:27:04] 2025-11-28 06:26:14,525 | INFO     | ready for new job
[2025-11-28 07:27:04] 2025-11-28 06:26:14,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:27:04] 2025-11-28 06:26:14,526 | INFO     | ***************************************
[2025-11-28 07:27:04] 2025-11-28 06:26:14,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:27:04] 2025-11-28 06:26:14,526 | INFO     | ***************************************
[2025-11-28 07:27:04] 2025-11-28 06:26:14,527 | INFO     | 
[2025-11-28 07:27:04] 2025-11-28 06:26:14,527 | INFO     | architecture information:
[2025-11-28 07:27:04] 2025-11-28 06:26:14,527 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:27:04] 2025-11-28 06:26:14,536 | INFO     | cat /etc/os-release:
[2025-11-28 07:27:04] NAME="CentOS Linux"
[2025-11-28 07:27:04] VERSION="7 (Core)"
[2025-11-28 07:27:04] ID="centos"
[2025-11-28 07:27:04] ID_LIKE="rhel fedora"
[2025-11-28 07:27:04] VERSION_ID="7"
[2025-11-28 07:27:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:27:04] ANSI_COLOR="0;31"
[2025-11-28 07:27:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:27:04] HOME_URL="https://www.centos.org/"
[2025-11-28 07:27:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:27:04] 
[2025-11-28 07:27:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:27:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:27:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:27:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:27:04] 
[2025-11-28 07:27:04] 2025-11-28 06:26:14,536 | INFO     | ***************************************
[2025-11-28 07:27:04] 2025-11-28 06:26:15,039 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | INFO     | sufficient remaining disk space (221199204352 B)
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | INFO     | update_server=False
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:27:04] 2025-11-28 06:26:15,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:27:04] 2025-11-28 06:26:15,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:27:04] 2025-11-28 06:26:15,186 | INFO     | aborting loop
[2025-11-28 07:27:04] 2025-11-28 06:26:15,751 | INFO     | all payload control threads have been joined
[2025-11-28 07:27:04] 2025-11-28 06:26:15,751 | INFO     | all job control threads have been joined
[2025-11-28 07:27:04] 2025-11-28 06:26:16,058 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,058 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,066 | INFO     | all data control threads have been joined
[2025-11-28 07:27:04] 2025-11-28 06:26:16,114 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,192 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,269 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,361 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,696 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,757 | INFO     | [payload] control thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:16,757 | INFO     | [job] control thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:17,058 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:17,072 | INFO     | [data] control thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:17,275 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:17,426 | INFO     | [job] validate thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:17,430 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:18,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:27:04] 2025-11-28 06:26:22,402 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:25,746 | INFO     | job.realtimelogging is not enabled
[2025-11-28 07:27:04] 2025-11-28 06:26:26,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:27:04] 2025-11-28 06:26:45,695 | INFO     | PID=1353925 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:27:04] 2025-11-28 06:26:45,695 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:27:04] 2025-11-28 06:26:45,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:27:04] 2025-11-28 06:26:45,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:27:04] 2025-11-28 06:26:58,026 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:27:04] 2025-11-28 06:26:59,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429324420928)>', '<ExcThread(monitor, started 140428384925440)>']
[2025-11-28 07:27:04] 2025-11-28 06:26:59,769 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:27:04] 2025-11-28 06:26:59,769 | INFO     | [monitor] control thread has ended
[2025-11-28 07:27:04] 2025-11-28 06:27:04,058 | INFO     | all workflow threads have been joined
[2025-11-28 07:27:04] 2025-11-28 06:27:04,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:27:04] 2025-11-28 06:27:04,059 | INFO     | traces error code: 0
[2025-11-28 07:27:04] 2025-11-28 06:27:04,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:27:04] 2025-11-28 06:27:04,106 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:27:04] 2025-11-28 06:27:04,109 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:27:04] 2025-11-28 06:27:04,111 [wrapper] pilotpid: 1353925
[2025-11-28 07:27:04] 2025-11-28 06:27:04,114 [wrapper] Pilot exit status: 0
[2025-11-28 07:27:04] 2025-11-28 06:27:04,121 [wrapper] pandaids: 6896243467
[2025-11-28 07:27:04] 2025-11-28 06:27:04,138 [wrapper] cleanup supervisor_pilot 1418845 1353926
[2025-11-28 07:27:04] 2025-11-28 06:27:04,141 [wrapper] Test setup, not cleaning
[2025-11-28 07:27:04] 2025-11-28 06:27:04,144 [wrapper] apfmon messages muted
[2025-11-28 07:27:04] 2025-11-28 06:27:04,147 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:27:04] 2025-11-28 06:27:04,150 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:27:04]  *** Error codes and diagnostics ***
[2025-11-28 07:27:04]     "exeErrorCode": 0,
[2025-11-28 07:27:04]     "exeErrorDiag": "",
[2025-11-28 07:27:04]     "pilotErrorCode": 0,
[2025-11-28 07:27:04]     "pilotErrorDiag": "",
[2025-11-28 07:27:04]  *** Listing of results directory ***
[2025-11-28 07:27:04] total 1320900
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc    576529 Nov 24 22:08 pilot3.tar.gz
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc      5112 Nov 24 22:56 queuedata.json
[2025-11-28 07:27:04] -rwx------ 1 boinc boinc     36292 Nov 24 22:57 runpilot2-wrapper.sh
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc       100 Nov 27 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:27:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 22:40 run_atlas
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc       105 Nov 27 22:40 job.xml
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc 413193420 Nov 27 22:40 EVNT.47483658._001424.pool.root.1
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc    590106 Nov 27 22:40 input.tar.gz
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:40 start_atlas.sh
[2025-11-28 07:27:04] drwxrwx--x 2 boinc boinc      4096 Nov 27 22:40 shared
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc         0 Nov 27 22:40 boinc_setup_complete
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc      6198 Nov 27 22:40 init_data.xml
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc         0 Nov 27 22:40 boinc_lockfile
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc      2786 Nov 27 22:41 pandaJob.out
[2025-11-28 07:27:04] -rw------- 1 boinc boinc    991540 Nov 27 22:41 agis_schedconf.cvmfs.json
[2025-11-28 07:27:04] drwx------ 5 boinc boinc      4096 Nov 27 22:41 pilot3
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc       531 Nov 28 07:21 boinc_task_state.xml
[2025-11-28 07:27:04] -rw------- 1 boinc boinc 924237102 Nov 28 07:25 HITS.47556149._004103.pool.root.1
[2025-11-28 07:27:04] -rw------- 1 boinc boinc        95 Nov 28 07:25 pilot_heartbeat.json
[2025-11-28 07:27:04] -rw------- 1 boinc boinc      1023 Nov 28 07:26 memory_monitor_summary.json
[2025-11-28 07:27:04] -rw------- 1 boinc boinc   1516240 Nov 28 07:26 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:27:04] -rw------- 1 boinc boinc   1201803 Nov 28 07:26 log.47556149._004103.job.log.tgz.1
[2025-11-28 07:27:04] -rw------- 1 boinc boinc      8577 Nov 28 07:26 heartbeat.json
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc      8192 Nov 28 07:26 boinc_mmap_file
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc        28 Nov 28 07:26 wrapper_checkpoint.txt
[2025-11-28 07:27:04] -rw------- 1 boinc boinc      4824 Nov 28 07:27 pilotlog.txt
[2025-11-28 07:27:04] -rw------- 1 boinc boinc   4431617 Nov 28 07:27 log.47556149._004103.job.log.1
[2025-11-28 07:27:04] -rw------- 1 boinc boinc       353 Nov 28 07:27 output.list
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc       620 Nov 28 07:27 runtime_log
[2025-11-28 07:27:04] -rw------- 1 boinc boinc   5652480 Nov 28 07:27 result.tar.gz
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc      8898 Nov 28 07:27 runtime_log.err
[2025-11-28 07:27:04] -rw------- 1 boinc boinc       665 Nov 28 07:27 Ba7LDmljth8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeDJKDmvyu2yn.diag
[2025-11-28 07:27:04] -rw-r--r-- 1 boinc boinc     11530 Nov 28 07:27 stderr.txt
[2025-11-28 07:27:04] HITS file was successfully produced:
[2025-11-28 07:27:04] -rw------- 1 boinc boinc 924237102 Nov 28 07:25 shared/HITS.pool.root.1
[2025-11-28 07:27:04]  *** Contents of shared directory: ***
[2025-11-28 07:27:04] total 1312212
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc 413193420 Nov 27 22:40 ATLAS.root_0
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc    590106 Nov 27 22:40 input.tar.gz
[2025-11-28 07:27:04] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:40 start_atlas.sh
[2025-11-28 07:27:04] -rw------- 1 boinc boinc 924237102 Nov 28 07:25 HITS.pool.root.1
[2025-11-28 07:27:04] -rw------- 1 boinc boinc   5652480 Nov 28 07:27 result.tar.gz
07:27:05 (1350206): run_atlas exited; CPU time 93034.866185
07:27:05 (1350206): called boinc_finish(0)

</stderr_txt>
]]>

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