Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:02:42 (21788): wrapper (7.7.26015): starting
04:02:42 (21788): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:02:42] Arguments: --nthreads 8
[2025-11-25 04:02:42] Threads: 8
[2025-11-25 04:02:42] Checking for CVMFS
[2025-11-25 04:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:02:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:02:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:02:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:02:42] 2.11.2.0 28705 116197 145068 153276 3 81 10165139 18432000 1885 130560 0 84855351 99.974 4955119 32037 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 04:02:42] CVMFS is ok
[2025-11-25 04:02:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:02:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:02:42] Further information can be found at the LHC@home message board.
[2025-11-25 04:02:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:02:42] Checking for apptainer binary...
[2025-11-25 04:02:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:02:42] Running /usr/bin/apptainer --version
[2025-11-25 04:02:42] apptainer version 1.3.2-1.el7
[2025-11-25 04:02:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:02:43] c-206-27.aglt2.org
[2025-11-25 04:02:43] apptainer works
[2025-11-25 04:02:43] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:02:43] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:02:43] Starting ATLAS job with PandaID=6895559449
[2025-11-25 04:02:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:36:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:36:06] 2025-11-26 04:35:33,169 | INFO     | time since job start (70359s) is within the limit (172800.0s)
[2025-11-25 23:36:06] 2025-11-26 04:35:33,198 | INFO     | monitor loop #5033: job 0:6895559449 is in state 'finished'
[2025-11-25 23:36:06] 2025-11-26 04:35:33,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:36:06] 2025-11-26 04:35:33,893 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 23:36:06] 2025-11-26 04:35:33,899 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2095.1666666666665
[2025-11-25 23:36:06] 2025-11-26 04:35:33,903 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895559449/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:36:06] 2025-11-26 04:35:33,904 | INFO     | extracted standard info from prmon json
[2025-11-25 23:36:06] 2025-11-26 04:35:33,904 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:36:06] 2025-11-26 04:35:33,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:36:06] 2025-11-26 04:35:33,920 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:36:06] 2025-11-26 04:35:33,921 | INFO     | sum of square deviations: 475298877703.2777
[2025-11-25 23:36:06] 2025-11-26 04:35:33,947 | INFO     | sum of deviations: 2234801049892.716
[2025-11-25 23:36:06] 2025-11-26 04:35:33,947 | INFO     | mean x: 1764096536.6348655
[2025-11-25 23:36:06] 2025-11-26 04:35:33,947 | INFO     | mean y: 2872798.3104943624
[2025-11-25 23:36:06] 2025-11-26 04:35:33,947 | INFO     | intersect: -8291707679.628038
[2025-11-25 23:36:06] 2025-11-26 04:35:33,949 | INFO     | chi2: 5.464504685549237
[2025-11-25 23:36:06] 2025-11-26 04:35:33,950 | INFO     | sum of square deviations: 469142464596.25415
[2025-11-25 23:36:06] 2025-11-26 04:35:33,976 | INFO     | sum of deviations: 2553396055402.7227
[2025-11-25 23:36:06] 2025-11-26 04:35:33,976 | INFO     | mean x: 1764096384.1376307
[2025-11-25 23:36:06] 2025-11-26 04:35:33,976 | INFO     | mean y: 2880685.786585366
[2025-11-25 23:36:06] 2025-11-26 04:35:33,976 | INFO     | intersect: -9598545508.884937
[2025-11-25 23:36:06] 2025-11-26 04:35:33,977 | INFO     | chi2: 3.114250845373502
[2025-11-25 23:36:06] 2025-11-26 04:35:33,977 | INFO     | current chi2=3.114250845373502 (change=43.009457863416785 %)
[2025-11-25 23:36:06] 2025-11-26 04:35:33,978 | INFO     | sum of square deviations: 463039447839.21313
[2025-11-25 23:36:06] 2025-11-26 04:35:34,004 | INFO     | sum of deviations: 2701488748673.4854
[2025-11-25 23:36:06] 2025-11-26 04:35:34,004 | INFO     | mean x: 1764096231.64042
[2025-11-25 23:36:06] 2025-11-26 04:35:34,004 | INFO     | mean y: 2884383.9938757657
[2025-11-25 23:36:06] 2025-11-26 04:35:34,004 | INFO     | intersect: -10289297294.247795
[2025-11-25 23:36:06] 2025-11-26 04:35:34,005 | INFO     | chi2: 2.51248245113334
[2025-11-25 23:36:06] 2025-11-26 04:35:34,005 | INFO     | current chi2=2.51248245113334 (change=19.323054696577923 %)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,005 | INFO     | right removable region: 1142
[2025-11-25 23:36:06] 2025-11-26 04:35:34,006 | INFO     | sum of square deviations: 469142018076.2544
[2025-11-25 23:36:06] 2025-11-26 04:35:34,032 | INFO     | sum of deviations: 1937348484850.1143
[2025-11-25 23:36:06] 2025-11-26 04:35:34,032 | INFO     | mean x: 1764096689.1376307
[2025-11-25 23:36:06] 2025-11-26 04:35:34,032 | INFO     | mean y: 2880157.7334494772
[2025-11-25 23:36:06] 2025-11-26 04:35:34,032 | INFO     | intersect: -7282056846.724725
[2025-11-25 23:36:06] 2025-11-26 04:35:34,033 | INFO     | chi2: 3.4547698376789784
[2025-11-25 23:36:06] 2025-11-26 04:35:34,033 | INFO     | current chi2=3.4547698376789784 (change=36.777987457581624 %)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,035 | INFO     | sum of square deviations: 463038835156.3217
[2025-11-25 23:36:06] 2025-11-26 04:35:34,060 | INFO     | sum of deviations: 1860778074028.6504
[2025-11-25 23:36:06] 2025-11-26 04:35:34,060 | INFO     | mean x: 1764096841.6369205
[2025-11-25 23:36:06] 2025-11-26 04:35:34,060 | INFO     | mean y: 2882070.695538058
[2025-11-25 23:36:06] 2025-11-26 04:35:34,060 | INFO     | intersect: -7086356399.492329
[2025-11-25 23:36:06] 2025-11-26 04:35:34,061 | INFO     | chi2: 3.4022036168003726
[2025-11-25 23:36:06] 2025-11-26 04:35:34,062 | INFO     | current chi2=3.4022036168003726 (change=1.521554932699116 %)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,062 | INFO     | left removable region: 20
[2025-11-25 23:36:06] 2025-11-26 04:35:34,063 | INFO     | sum of square deviations: 437983457218.6096
[2025-11-25 23:36:06] 2025-11-26 04:35:34,087 | INFO     | sum of deviations: 2217983497062.993
[2025-11-25 23:36:06] 2025-11-26 04:35:34,087 | INFO     | mean x: 1764096811.144385
[2025-11-25 23:36:06] 2025-11-26 04:35:34,087 | INFO     | mean y: 2897717.2531194296
[2025-11-25 23:36:06] 2025-11-26 04:35:34,087 | INFO     | intersect: -8930630592.668282
[2025-11-25 23:36:06] 2025-11-26 04:35:34,088 | INFO     | chi2: 0.32217737071858765
[2025-11-25 23:36:06] 2025-11-26 04:35:34,088 | INFO     | current memory leak: 5.06 B/s (using 1122 data points, chi2=0.32)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,089 | INFO     | could have reported an average CPU frequency of 2607 MHz (42 samples)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,089 | INFO     | ..............................
[2025-11-25 23:36:06] 2025-11-26 04:35:34,089 | INFO     | . Timing measurements:
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . get job = 0 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . initial setup = 2 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . payload setup = 5 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . stage-in = 0 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . payload execution = 70325 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . stage-out = 3 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | . log creation = 0 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,090 | INFO     | ..............................
[2025-11-25 23:36:06] 2025-11-26 04:35:34,231 | INFO     | 
[2025-11-25 23:36:06] 2025-11-26 04:35:34,231 | INFO     | job summary report
[2025-11-25 23:36:06] 2025-11-26 04:35:34,231 | INFO     | --------------------------------------------------
[2025-11-25 23:36:06] 2025-11-26 04:35:34,231 | INFO     | PanDA job id: 6895559449
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | task id: 47556149
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | errors: (none)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | pilot state: finished 
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | transexitcode: 0
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | exeerrorcode: 0
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | exeerrordiag: 
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | exitcode: 0
[2025-11-25 23:36:06] 2025-11-26 04:35:34,232 | INFO     | exitmsg: OK
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | cpuconsumptiontime: 540532 s
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | nevents: 1000
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | neventsw: 0
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | pid: 32173
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | pgrp: 32173
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | corecount: 8
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | event service: False
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | sizes: {0: 2284143, 1: 2284342, 4: 2284604, 11: 2284632, 70334: 2341319, 70335: 2341318, 70339: 2350552, 70344: 2350742}
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | --------------------------------------------------
[2025-11-25 23:36:06] 2025-11-26 04:35:34,233 | INFO     | 
[2025-11-25 23:36:06] 2025-11-26 04:35:34,234 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | job 6895559449 has completed (purged errors)
[2025-11-25 23:36:06] 2025-11-26 04:35:34,254 | INFO     | overall cleanup function is called
[2025-11-25 23:36:06] 2025-11-26 04:35:35,267 | INFO     | --- collectZombieJob: --- 10, [32173]
[2025-11-25 23:36:06] 2025-11-26 04:35:35,267 | INFO     | zombie collector waiting for pid 32173
[2025-11-25 23:36:06] 2025-11-26 04:35:35,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:36:06] 2025-11-26 04:35:35,267 | INFO     | collected zombie processes
[2025-11-25 23:36:06] 2025-11-26 04:35:35,268 | INFO     | will attempt to kill all subprocesses of pid=32173
[2025-11-25 23:36:06] 2025-11-26 04:35:35,382 | INFO     | process IDs to be killed: [32173] (in reverse order)
[2025-11-25 23:36:06] 2025-11-26 04:35:35,423 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:36:06] 2025-11-26 04:35:35,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:36:06] 2025-11-26 04:35:35,427 | INFO     | did not find any defunct processes belonging to 32173
[2025-11-25 23:36:06] 2025-11-26 04:35:35,430 | INFO     | did not find any defunct processes belonging to 32173
[2025-11-25 23:36:06] 2025-11-26 04:35:35,431 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:36:06] 2025-11-26 04:35:35,432 | INFO     | ready for new job
[2025-11-25 23:36:06] 2025-11-26 04:35:35,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:36:06] 2025-11-26 04:35:35,436 | INFO     | ***************************************
[2025-11-25 23:36:06] 2025-11-26 04:35:35,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:36:06] 2025-11-26 04:35:35,436 | INFO     | ***************************************
[2025-11-25 23:36:06] 2025-11-26 04:35:35,436 | INFO     | 
[2025-11-25 23:36:06] 2025-11-26 04:35:35,437 | INFO     | architecture information:
[2025-11-25 23:36:06] 2025-11-26 04:35:35,438 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:36:06] 2025-11-26 04:35:35,451 | INFO     | cat /etc/os-release:
[2025-11-25 23:36:06] NAME="CentOS Linux"
[2025-11-25 23:36:06] VERSION="7 (Core)"
[2025-11-25 23:36:06] ID="centos"
[2025-11-25 23:36:06] ID_LIKE="rhel fedora"
[2025-11-25 23:36:06] VERSION_ID="7"
[2025-11-25 23:36:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:36:06] ANSI_COLOR="0;31"
[2025-11-25 23:36:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:36:06] HOME_URL="https://www.centos.org/"
[2025-11-25 23:36:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:36:06] 
[2025-11-25 23:36:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:36:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:36:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:36:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:36:06] 
[2025-11-25 23:36:06] 2025-11-26 04:35:35,451 | INFO     | ***************************************
[2025-11-25 23:36:06] 2025-11-26 04:35:35,954 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 23:36:06] 2025-11-26 04:35:35,969 | INFO     | sufficient remaining disk space (24861736960 B)
[2025-11-25 23:36:06] 2025-11-26 04:35:35,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:36:06] 2025-11-26 04:35:35,969 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:36:06] 2025-11-26 04:35:35,969 | INFO     | update_server=False
[2025-11-25 23:36:06] 2025-11-26 04:35:35,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:36:06] 2025-11-26 04:35:35,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:36:06] 2025-11-26 04:35:35,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:36:06] 2025-11-26 04:35:36,362 | INFO     | all data control threads have been joined
[2025-11-25 23:36:06] 2025-11-26 04:35:36,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:36:06] 2025-11-26 04:35:36,706 | INFO     | aborting loop
[2025-11-25 23:36:06] 2025-11-26 04:35:36,872 | INFO     | all payload control threads have been joined
[2025-11-25 23:36:06] 2025-11-26 04:35:36,975 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:36,976 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:36:06] 2025-11-26 04:35:37,367 | INFO     | [data] control thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,377 | INFO     | all job control threads have been joined
[2025-11-25 23:36:06] 2025-11-26 04:35:37,393 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,575 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,576 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,708 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,739 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,746 | INFO     | [job] validate thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:37,877 | INFO     | [payload] control thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:38,310 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:38,352 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:38,382 | INFO     | [job] control thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:39,267 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:39,976 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:36:06] 2025-11-26 04:35:50,802 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:36:06] 2025-11-26 04:35:52,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541953505088)>', '<ExcThread(monitor, started 140541496899328)>']
[2025-11-25 23:36:06] 2025-11-26 04:35:57,484 | INFO     | all workflow threads have been joined
[2025-11-25 23:36:06] 2025-11-26 04:35:57,484 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:36:06] 2025-11-26 04:35:57,484 | INFO     | traces error code: 0
[2025-11-25 23:36:06] 2025-11-26 04:35:57,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:36:06] 2025-11-26 04:36:06,378 | INFO     | PID=25486 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:36:06] 2025-11-26 04:36:06,378 | INFO     | .. there are 3 such processes running
[2025-11-25 23:36:06] 2025-11-26 04:36:06,379 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:36:06] 2025-11-26 04:36:06,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:36:06] 2025-11-26 04:36:06,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:36:06] 2025-11-26 04:36:06,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:36:06] 2025-11-26 04:36:06,379 | INFO     | [monitor] control thread has ended
[2025-11-25 23:36:06] 2025-11-26 04:36:06,463 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:36:06] 2025-11-26 04:36:06,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:36:06] 2025-11-26 04:36:06,468 [wrapper] pilotpid: 25486
[2025-11-25 23:36:06] 2025-11-26 04:36:06,470 [wrapper] Pilot exit status: 0
[2025-11-25 23:36:06] 2025-11-26 04:36:06,479 [wrapper] pandaids: 6895559449
[2025-11-25 23:36:06] 2025-11-26 04:36:06,506 [wrapper] cleanup supervisor_pilot 31455 25487
[2025-11-25 23:36:06] 2025-11-26 04:36:06,509 [wrapper] Test setup, not cleaning
[2025-11-25 23:36:06] 2025-11-26 04:36:06,511 [wrapper] apfmon messages muted
[2025-11-25 23:36:06] 2025-11-26 04:36:06,513 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:36:06] 2025-11-26 04:36:06,516 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:36:06]  *** Error codes and diagnostics ***
[2025-11-25 23:36:06]     "exeErrorCode": 0,
[2025-11-25 23:36:06]     "exeErrorDiag": "",
[2025-11-25 23:36:06]     "pilotErrorCode": 0,
[2025-11-25 23:36:06]     "pilotErrorDiag": "",
[2025-11-25 23:36:06]  *** Listing of results directory ***
[2025-11-25 23:36:06] total 1318696
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 05:13 pilot3.tar.gz
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 05:31 queuedata.json
[2025-11-25 23:36:06] -rwx------ 1 boincer umatlas     36292 Nov 24 05:31 runpilot2-wrapper.sh
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas       100 Nov 25 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:36:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 04:02 run_atlas
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas       105 Nov 25 04:02 job.xml
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas 410001939 Nov 25 04:02 EVNT.47483658._001307.pool.root.1
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 04:02 start_atlas.sh
[2025-11-25 23:36:06] drwxrwx--x 2 boincer umatlas      4096 Nov 25 04:02 shared
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas    590107 Nov 25 04:02 input.tar.gz
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas         0 Nov 25 04:02 boinc_lockfile
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 04:02 pandaJob.out
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas        57 Nov 25 04:02 setup.sh.local
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas    991858 Nov 25 04:02 agis_schedconf.cvmfs.json
[2025-11-25 23:36:06] drwx------ 5 boincer umatlas      4096 Nov 25 04:02 pilot3
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas       533 Nov 25 23:21 boinc_task_state.xml
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 23:28 init_data.xml
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas 912333800 Nov 25 23:34 HITS.47556149._002936.pool.root.1
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas        95 Nov 25 23:35 pilot_heartbeat.json
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas      1068 Nov 25 23:35 memory_monitor_summary.json
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas   1516240 Nov 25 23:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas   2313587 Nov 25 23:35 log.47556149._002936.job.log.tgz.1
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas      8681 Nov 25 23:35 heartbeat.json
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 23:35 boinc_mmap_file
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas        29 Nov 25 23:35 wrapper_checkpoint.txt
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas       820 Nov 25 23:36 pilotlog.txt
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas   9732219 Nov 25 23:36 log.47556149._002936.job.log.1
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas       353 Nov 25 23:36 output.list
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas       620 Nov 25 23:36 runtime_log
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas  12062720 Nov 25 23:36 result.tar.gz
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 23:36 runtime_log.err
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas       668 Nov 25 23:36 RGfNDm81ih8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm00IKDm3qfjSm.diag
[2025-11-25 23:36:06] -rw-r--r-- 1 boincer umatlas     21310 Nov 25 23:36 stderr.txt
[2025-11-25 23:36:06] HITS file was successfully produced:
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas 912333800 Nov 25 23:34 shared/HITS.pool.root.1
[2025-11-25 23:36:06]  *** Contents of shared directory: ***
[2025-11-25 23:36:06] total 1303732
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas 410001939 Nov 25 04:02 ATLAS.root_0
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 04:02 start_atlas.sh
[2025-11-25 23:36:06] -rw-r--r-- 2 boincer umatlas    590107 Nov 25 04:02 input.tar.gz
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas 912333800 Nov 25 23:34 HITS.pool.root.1
[2025-11-25 23:36:06] -rw------- 1 boincer umatlas  12062720 Nov 25 23:36 result.tar.gz
23:36:07 (21788): run_atlas exited; CPU time 539089.534343
23:36:07 (21788): called boinc_finish(0)

</stderr_txt>
]]>

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