Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:44:45 (3413128): wrapper (7.7.26015): starting
09:44:45 (3413128): wrapper: running run_atlas (--nthreads 2)
[2025-11-28 09:44:45] Arguments: --nthreads 2
[2025-11-28 09:44:45] Threads: 2
[2025-11-28 09:44:45] Checking for CVMFS
[2025-11-28 09:44:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 09:44:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 09:44:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 09:44:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 09:44:45] 2.9.2.0 1624889 13723 58292 153403 2 81 20929910 36864001 0 130560 1 4366017 99.932 668679 1063 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 09:44:45] CVMFS is ok
[2025-11-28 09:44:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 09:44:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 09:44:45] Further information can be found at the LHC@home message board.
[2025-11-28 09:44:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 09:44:45] Checking for apptainer binary...
[2025-11-28 09:44:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 09:44:45] Running /usr/bin/apptainer --version
[2025-11-28 09:44:45] apptainer version 1.4.1-1.1
[2025-11-28 09:44:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 09:44:45] thA315
[2025-11-28 09:44:45] apptainer works
[2025-11-28 09:44:45] Set ATHENA_PROC_NUMBER=2
[2025-11-28 09:44:45] Set ATHENA_CORE_NUMBER=2
[2025-11-28 09:44:45] Starting ATLAS job with PandaID=6894053075
[2025-11-28 09:44:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:35:29]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:35:29] 2025-11-28 12:34:58,373 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 13:35:29] 2025-11-28 12:34:58,373 | INFO     | ready for new job
[2025-11-28 13:35:29] 2025-11-28 12:34:58,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | ***************************************
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | ***************************************
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | 
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | architecture information:
[2025-11-28 13:35:29] 2025-11-28 12:34:58,374 | INFO     | executing command: cat /etc/os-release
[2025-11-28 13:35:29] 2025-11-28 12:34:58,382 | INFO     | cat /etc/os-release:
[2025-11-28 13:35:29] NAME="CentOS Linux"
[2025-11-28 13:35:29] VERSION="7 (Core)"
[2025-11-28 13:35:29] ID="centos"
[2025-11-28 13:35:29] ID_LIKE="rhel fedora"
[2025-11-28 13:35:29] VERSION_ID="7"
[2025-11-28 13:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:35:29] ANSI_COLOR="0;31"
[2025-11-28 13:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:35:29] HOME_URL="https://www.centos.org/"
[2025-11-28 13:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:35:29] 
[2025-11-28 13:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:35:29] 
[2025-11-28 13:35:29] 2025-11-28 12:34:58,382 | INFO     | ***************************************
[2025-11-28 13:35:29] 2025-11-28 12:34:58,885 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | INFO     | sufficient remaining disk space (501985837056 B)
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | INFO     | update_server=False
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | INFO     | aborting loop
[2025-11-28 13:35:29] 2025-11-28 12:34:58,897 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:35:29] 2025-11-28 12:34:59,038 | INFO     | all job control threads have been joined
[2025-11-28 13:35:29] 2025-11-28 12:34:59,644 | INFO     | all data control threads have been joined
[2025-11-28 13:35:29] 2025-11-28 12:34:59,901 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:34:59,903 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:34:59,903 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,042 | INFO     | [job] control thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,096 | INFO     | all payload control threads have been joined
[2025-11-28 13:35:29] 2025-11-28 12:35:00,133 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,203 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,604 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,633 | INFO     | [job] validate thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,650 | INFO     | [data] control thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,698 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,901 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,903 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:00,980 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:01,101 | INFO     | [payload] control thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:02,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:35:29] 2025-11-28 12:35:06,209 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:09,218 | INFO     | job.realtimelogging is not enabled
[2025-11-28 13:35:29] 2025-11-28 12:35:10,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:35:29] 2025-11-28 12:35:19,031 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:35:29] 2025-11-28 12:35:21,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666717755200)>', '<ExcThread(monitor, started 140665925125888)>']
[2025-11-28 13:35:29] 2025-11-28 12:35:26,152 | INFO     | all workflow threads have been joined
[2025-11-28 13:35:29] 2025-11-28 12:35:26,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:35:29] 2025-11-28 12:35:26,153 | INFO     | traces error code: 0
[2025-11-28 13:35:29] 2025-11-28 12:35:26,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | INFO     | PID=3416835 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:35:29] 2025-11-28 12:35:29,288 | INFO     | [monitor] control thread has ended
[2025-11-28 13:35:29] 2025-11-28 12:35:29,327 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:35:29] 2025-11-28 12:35:29,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:35:29] 2025-11-28 12:35:29,332 [wrapper] pilotpid: 3416835
[2025-11-28 13:35:29] 2025-11-28 12:35:29,334 [wrapper] Pilot exit status: 0
[2025-11-28 13:35:29] 2025-11-28 12:35:29,340 [wrapper] pandaids: 6894053075
[2025-11-28 13:35:29] 2025-11-28 12:35:29,353 [wrapper] cleanup supervisor_pilot 3449474 3416836
[2025-11-28 13:35:29] 2025-11-28 12:35:29,355 [wrapper] Test setup, not cleaning
[2025-11-28 13:35:29] 2025-11-28 12:35:29,357 [wrapper] apfmon messages muted
[2025-11-28 13:35:29] 2025-11-28 12:35:29,359 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:35:29] 2025-11-28 12:35:29,361 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:35:29]  *** Error codes and diagnostics ***
[2025-11-28 13:35:29]     "exeErrorCode": 0,
[2025-11-28 13:35:29]     "exeErrorDiag": "",
[2025-11-28 13:35:29]     "pilotErrorCode": 0,
[2025-11-28 13:35:29]     "pilotErrorDiag": "",
[2025-11-28 13:35:29]  *** Listing of results directory ***
[2025-11-28 13:35:29] total 610824
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc    576529 Nov 23 14:59 pilot3.tar.gz
[2025-11-28 13:35:29] -rwx------ 1 boinc boinc     36292 Nov 23 15:03 runpilot2-wrapper.sh
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      5112 Nov 23 15:03 queuedata.json
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc       100 Nov 28 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:35:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 09:44 run_atlas
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc       105 Nov 28 09:44 job.xml
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc 309903429 Nov 28 09:44 EVNT.47523616._000001.pool.root.1
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc    589942 Nov 28 09:44 input.tar.gz
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc     15847 Nov 28 09:44 start_atlas.sh
[2025-11-28 13:35:29] drwxrwx--x 2 boinc boinc      4096 Nov 28 09:44 shared
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc         0 Nov 28 09:44 boinc_setup_complete
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      6207 Nov 28 09:44 init_data.xml
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc         0 Nov 28 09:44 boinc_lockfile
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      2609 Nov 28 09:44 pandaJob.out
[2025-11-28 13:35:29] -rw------- 1 boinc boinc    991858 Nov 28 09:44 agis_schedconf.cvmfs.json
[2025-11-28 13:35:29] drwx------ 5 boinc boinc      4096 Nov 28 09:44 pilot3
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc       530 Nov 28 13:34 boinc_task_state.xml
[2025-11-28 13:35:29] -rw------- 1 boinc boinc 307025802 Nov 28 13:34 HITS.47523618._000021.pool.root.1
[2025-11-28 13:35:29] -rw------- 1 boinc boinc      1019 Nov 28 13:34 memory_monitor_summary.json
[2025-11-28 13:35:29] -rw------- 1 boinc boinc   1516240 Nov 28 13:34 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:35:29] -rw------- 1 boinc boinc    375055 Nov 28 13:34 log.47523618._000021.job.log.tgz.1
[2025-11-28 13:35:29] -rw------- 1 boinc boinc      7740 Nov 28 13:34 heartbeat.json
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc        28 Nov 28 13:35 wrapper_checkpoint.txt
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      8192 Nov 28 13:35 boinc_mmap_file
[2025-11-28 13:35:29] -rw------- 1 boinc boinc       747 Nov 28 13:35 pilotlog.txt
[2025-11-28 13:35:29] -rw------- 1 boinc boinc        95 Nov 28 13:35 pilot_heartbeat.json
[2025-11-28 13:35:29] -rw------- 1 boinc boinc   1950531 Nov 28 13:35 log.47523618._000021.job.log.1
[2025-11-28 13:35:29] -rw------- 1 boinc boinc       357 Nov 28 13:35 output.list
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc       620 Nov 28 13:35 runtime_log
[2025-11-28 13:35:29] -rw------- 1 boinc boinc   2344960 Nov 28 13:35 result.tar.gz
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      8898 Nov 28 13:35 runtime_log.err
[2025-11-28 13:35:29] -rw------- 1 boinc boinc       662 Nov 28 13:35 7FCMDmEsPh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgxKKDmAK5Gpn.diag
[2025-11-28 13:35:29] -rw-r--r-- 1 boinc boinc      9844 Nov 28 13:35 stderr.txt
[2025-11-28 13:35:29] HITS file was successfully produced:
[2025-11-28 13:35:29] -rw------- 1 boinc boinc 307025802 Nov 28 13:34 shared/HITS.pool.root.1
[2025-11-28 13:35:29]  *** Contents of shared directory: ***
[2025-11-28 13:35:29] total 605372
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc 309903429 Nov 28 09:44 ATLAS.root_0
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc    589942 Nov 28 09:44 input.tar.gz
[2025-11-28 13:35:29] -rw-r--r-- 2 boinc boinc     15847 Nov 28 09:44 start_atlas.sh
[2025-11-28 13:35:29] -rw------- 1 boinc boinc 307025802 Nov 28 13:34 HITS.pool.root.1
[2025-11-28 13:35:29] -rw------- 1 boinc boinc   2344960 Nov 28 13:35 result.tar.gz
13:35:31 (3413128): run_atlas exited; CPU time 27179.454029
13:35:31 (3413128): called boinc_finish(0)

</stderr_txt>
]]>

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