Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:37:22 (1096650): wrapper (7.7.26015): starting
00:37:22 (1096650): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:37:22] Arguments: --nthreads 12
[2025-11-25 00:37:22] Threads: 12
[2025-11-25 00:37:22] Checking for CVMFS
[2025-11-25 00:37:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:37:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:37:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:37:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:37:23] 2.11.5.0 2885516 26666 212568 153276 1 282 37615071 45568000 11778 130560 0 238210538 99.760 167355109 10480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 00:37:23] CVMFS is ok
[2025-11-25 00:37:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:37:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:37:23] Further information can be found at the LHC@home message board.
[2025-11-25 00:37:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:37:23] Checking for apptainer binary...
[2025-11-25 00:37:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:37:23] Running /usr/bin/apptainer --version
[2025-11-25 00:37:23] apptainer version 1.4.1-1.el9
[2025-11-25 00:37:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:37:23] wns0089.triumf.lcg
[2025-11-25 00:37:23] apptainer works
[2025-11-25 00:37:23] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:37:23] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:37:23] Starting ATLAS job with PandaID=6894238266
[2025-11-25 00:37:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:40:48]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | found no stored workdir sizes
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | WARNING  | wrong length of table data, x=[1764059878.0], y=[1016.0] (must be same and length>=4)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | could have reported an average CPU frequency of 2498 MHz (4 samples)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . Timing measurements:
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . get job = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . initial setup = 2 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload setup = 4 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-in = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload execution = 17 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-out = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . log creation = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 00:40:48] 2025-11-25 08:40:15,396 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238266/pilotlog.txt
[2025-11-25 00:40:48] 2025-11-25 08:40:15,407 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 00:40:48] - Log from pilotlog.txt -
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | found no stored workdir sizes
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | WARNING  | wrong length of table data, x=[1764059878.0], y=[1016.0] (must be same and length>=4)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | could have reported an average CPU frequency of 2498 MHz (4 samples)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . Timing measurements:
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . get job = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . initial setup = 2 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload setup = 4 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-in = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload execution = 17 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-out = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . log creation = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 00:40:48] 2025-11-25 08:40:15,396 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238266/pilotlog.txt
[2025-11-25 00:40:48] 2025-11-25 08:40:15,407 | WARNING  | 
[2025-11-25 00:40:48] [begin log extracts]
[2025-11-25 00:40:48] - Log from pilotlog.txt -
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | WARNING  | found no stored workdir sizes
[2025-11-25 00:40:48] 2025-11-25 08:40:15,394 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | WARNING  | wrong length of table data, x=[1764059878.0], y=[1016.0] (must be same and length>=4)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | could have reported an average CPU frequency of 2498 MHz (4 samples)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . Timing measurements:
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . get job = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . initial setup = 2 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload setup = 4 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-in = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . payload execution = 17 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . stage-out = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | . log creation = 0 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | ..............................
[2025-11-25 00:40:48] 2025-11-25 08:40:15,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 00:40:48] 2025-11-25 08:40:15,396 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238266/pilotlog.txt
[2025-11-25 00:40:48] [end log extracts]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,408 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,408 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | 
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | job summary report
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | --------------------------------------------------
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | PanDA job id: 6894238266
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | task id: 47523675
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 00:38:06,100 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | pilot state: failed 
[2025-11-25 00:40:48] 2025-11-25 08:40:15,466 | INFO     | transexitcode: 65
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | exeerrorcode: 65
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | exitcode: 65
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | cpuconsumptiontime: 18 s
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | nevents: 0
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | neventsw: 0
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | pid: 1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | pgrp: 1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | corecount: 12
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | event service: False
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | sizes: {0: 2283897, 5: 2284159, 11: 2284215, 25: 2307539, 26: 2311831, 27: 2311859, 147: 2312153}
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | --------------------------------------------------
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | 
[2025-11-25 00:40:48] 2025-11-25 08:40:15,467 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 00:40:48] 2025-11-25 08:40:15,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:40:48] 2025-11-25 08:40:15,485 | INFO     | job 6894238266 has completed (purged errors)
[2025-11-25 00:40:48] 2025-11-25 08:40:15,485 | INFO     | overall cleanup function is called
[2025-11-25 00:40:48] 2025-11-25 08:40:16,490 | INFO     | --- collectZombieJob: --- 10, [1106834]
[2025-11-25 00:40:48] 2025-11-25 08:40:16,490 | INFO     | zombie collector waiting for pid 1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:16,490 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:40:48] 2025-11-25 08:40:16,491 | INFO     | collected zombie processes
[2025-11-25 00:40:48] 2025-11-25 08:40:16,491 | INFO     | will attempt to kill all subprocesses of pid=1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:16,633 | INFO     | process IDs to be killed: [1106834] (in reverse order)
[2025-11-25 00:40:48] 2025-11-25 08:40:16,691 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:40:48] 2025-11-25 08:40:16,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:40:48] 2025-11-25 08:40:16,698 | INFO     | did not find any defunct processes belonging to 1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:16,704 | INFO     | did not find any defunct processes belonging to 1106834
[2025-11-25 00:40:48] 2025-11-25 08:40:16,704 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:40:48] 2025-11-25 08:40:16,705 | INFO     | ready for new job
[2025-11-25 00:40:48] 2025-11-25 08:40:16,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:40:48] 2025-11-25 08:40:16,706 | INFO     | ***************************************
[2025-11-25 00:40:48] 2025-11-25 08:40:16,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:40:48] 2025-11-25 08:40:16,706 | INFO     | ***************************************
[2025-11-25 00:40:48] 2025-11-25 08:40:16,706 | INFO     | 
[2025-11-25 00:40:48] 2025-11-25 08:40:16,708 | INFO     | architecture information:
[2025-11-25 00:40:48] 2025-11-25 08:40:16,708 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:40:48] 2025-11-25 08:40:16,727 | INFO     | cat /etc/os-release:
[2025-11-25 00:40:48] NAME="CentOS Linux"
[2025-11-25 00:40:48] VERSION="7 (Core)"
[2025-11-25 00:40:48] ID="centos"
[2025-11-25 00:40:48] ID_LIKE="rhel fedora"
[2025-11-25 00:40:48] VERSION_ID="7"
[2025-11-25 00:40:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:40:48] ANSI_COLOR="0;31"
[2025-11-25 00:40:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:40:48] HOME_URL="https://www.centos.org/"
[2025-11-25 00:40:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:40:48] 
[2025-11-25 00:40:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:40:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:40:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:40:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:40:48] 
[2025-11-25 00:40:48] 2025-11-25 08:40:16,727 | INFO     | ***************************************
[2025-11-25 00:40:48] 2025-11-25 08:40:17,230 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 00:40:48] 2025-11-25 08:40:17,243 | INFO     | sufficient remaining disk space (1966787788800 B)
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | INFO     | update_server=False
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | INFO     | aborting loop
[2025-11-25 00:40:48] 2025-11-25 08:40:17,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:40:48] 2025-11-25 08:40:17,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:40:48] 2025-11-25 08:40:18,249 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:18,250 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:18,250 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:18,346 | INFO     | all data control threads have been joined
[2025-11-25 00:40:48] 2025-11-25 08:40:18,490 | INFO     | all job control threads have been joined
[2025-11-25 00:40:48] 2025-11-25 08:40:18,532 | INFO     | all payload control threads have been joined
[2025-11-25 00:40:48] 2025-11-25 08:40:18,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:40:48] 2025-11-25 08:40:18,668 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,048 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,351 | INFO     | [data] control thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,417 | INFO     | [job] validate thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,472 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,481 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,496 | INFO     | [job] control thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,537 | INFO     | [payload] control thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,575 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,597 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:19,686 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:22,632 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:40:48] 2025-11-25 08:40:32,705 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:40:48] 2025-11-25 08:40:33,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287218956096)>', '<ExcThread(monitor, started 140286801975040)>']
[2025-11-25 00:40:48] 2025-11-25 08:40:38,094 | INFO     | all workflow threads have been joined
[2025-11-25 00:40:48] 2025-11-25 08:40:38,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:40:48] 2025-11-25 08:40:38,095 | INFO     | traces error code: 0
[2025-11-25 00:40:48] 2025-11-25 08:40:38,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:40:48] 2025-11-25 08:40:48,430 | INFO     | PID=1100305 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 00:40:48] 2025-11-25 08:40:48,431 | INFO     | .. there are 13 such processes running
[2025-11-25 00:40:48] 2025-11-25 08:40:48,431 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:40:48] 2025-11-25 08:40:48,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:40:48] 2025-11-25 08:40:48,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:40:48] 2025-11-25 08:40:48,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:40:48] 2025-11-25 08:40:48,432 | INFO     | [monitor] control thread has ended
[2025-11-25 00:40:48] 2025-11-25 08:40:48,579 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:40:48] 2025-11-25 08:40:48,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:40:48] 2025-11-25 08:40:48,583 [wrapper] pilotpid: 1100305
[2025-11-25 00:40:48] 2025-11-25 08:40:48,585 [wrapper] Pilot exit status: 0
[2025-11-25 00:40:48] 2025-11-25 08:40:48,592 [wrapper] pandaids: 6894238266
[2025-11-25 00:40:48] 2025-11-25 08:40:48,629 [wrapper] cleanup supervisor_pilot 1100311 1100306
[2025-11-25 00:40:48] 2025-11-25 08:40:48,632 [wrapper] Test setup, not cleaning
[2025-11-25 00:40:48] 2025-11-25 08:40:48,635 [wrapper] apfmon messages muted
[2025-11-25 00:40:48] 2025-11-25 08:40:48,637 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:40:48] 2025-11-25 08:40:48,639 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:40:48]  *** Error codes and diagnostics ***
[2025-11-25 00:40:48]     "exeErrorCode": 65,
[2025-11-25 00:40:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-25 00:40:48]     "pilotErrorCode": 1305,
[2025-11-25 00:40:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-25 00:40:48]  *** Listing of results directory ***
[2025-11-25 00:40:48] total 278468
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc    576529 Nov 24 13:08 pilot3.tar.gz
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc      5112 Nov 24 13:16 queuedata.json
[2025-11-25 00:40:48] -rwx------. 1 boinc boinc     36292 Nov 24 13:20 runpilot2-wrapper.sh
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc       100 Nov 25 00:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:40:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 00:37 run_atlas
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc       105 Nov 25 00:37 job.xml
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc      6595 Nov 25 00:37 init_data.xml
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc 281027544 Nov 25 00:37 EVNT.47523673._000002.pool.root.1
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:37 start_atlas.sh
[2025-11-25 00:40:48] drwxrwx--x. 2 boinc boinc      4096 Nov 25 00:37 shared
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc    589944 Nov 25 00:37 input.tar.gz
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc         0 Nov 25 00:37 boinc_lockfile
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc      2613 Nov 25 00:37 pandaJob.out
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc    991858 Nov 25 00:37 agis_schedconf.cvmfs.json
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc   1516240 Nov 25 00:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:40:48] drwx------. 5 boinc boinc      4096 Nov 25 00:37 pilot3
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc       522 Nov 25 00:38 boinc_task_state.xml
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc       958 Nov 25 00:38 memory_monitor_summary.json
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc     21136 Nov 25 00:38 log.47523675._000046.job.log.tgz.1
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc      8379 Nov 25 00:40 heartbeat.json
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:40 boinc_mmap_file
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc        22 Nov 25 00:40 wrapper_checkpoint.txt
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc       823 Nov 25 00:40 pilotlog.txt
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc        95 Nov 25 00:40 pilot_heartbeat.json
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc     86218 Nov 25 00:40 log.47523675._000046.job.log.1
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc       188 Nov 25 00:40 output.list
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:40 runtime_log
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc    122880 Nov 25 00:40 result.tar.gz
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc       645 Nov 25 00:40 Yb3KDmBAth8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpCJKDmP0cMHm.diag
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc      8636 Nov 25 00:40 runtime_log.err
[2025-11-25 00:40:48] -rw-r--r--. 1 boinc boinc     21760 Nov 25 00:40 stderr.txt
[2025-11-25 00:40:48] No HITS result produced
[2025-11-25 00:40:48]  *** Contents of shared directory: ***
[2025-11-25 00:40:48] total 275164
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc 281027544 Nov 25 00:37 ATLAS.root_0
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:37 start_atlas.sh
[2025-11-25 00:40:48] -rw-r--r--. 2 boinc boinc    589944 Nov 25 00:37 input.tar.gz
[2025-11-25 00:40:48] -rw-------. 1 boinc boinc    122880 Nov 25 00:40 result.tar.gz
00:40:49 (1096650): run_atlas exited; CPU time 22.092922
00:40:49 (1096650): called boinc_finish(0)

</stderr_txt>
]]>

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