Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:19 (19244): wrapper (7.7.26015): starting
03:36:19 (19244): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 03:36:19] Arguments: --nthreads 8
[2025-11-25 03:36:19] Threads: 8
[2025-11-25 03:36:19] Checking for CVMFS
[2025-11-25 03:36:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:36:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:36:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:36:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:36:19] 2.11.4.0 5420 115992 67964 153276 1 81 13028948 18432001 1635 130560 0 81768259 99.973 4928337 31824 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 03:36:19] CVMFS is ok
[2025-11-25 03:36:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 03:36:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 03:36:19] Further information can be found at the LHC@home message board.
[2025-11-25 03:36:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:36:19] Checking for apptainer binary...
[2025-11-25 03:36:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 03:36:19] Running /usr/bin/apptainer --version
[2025-11-25 03:36:19] apptainer version 1.3.2-1.el7
[2025-11-25 03:36:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:36:20] c-206-22.aglt2.org
[2025-11-25 03:36:20] apptainer works
[2025-11-25 03:36:20] Set ATHENA_PROC_NUMBER=8
[2025-11-25 03:36:20] Set ATHENA_CORE_NUMBER=8
[2025-11-25 03:36:20] Starting ATLAS job with PandaID=6891590846
[2025-11-25 03:36:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:30:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:30:29] 2025-11-26 03:29:40,258 | INFO     | time since job start (67989s) is within the limit (172800.0s)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,021 | INFO     | monitor loop #4870: job 0:6891590846 is in state 'finished'
[2025-11-25 22:30:29] 2025-11-26 03:29:41,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,492 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 22:30:29] 2025-11-26 03:29:41,496 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2372.5416666666665
[2025-11-25 22:30:29] 2025-11-26 03:29:41,499 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891590846/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,500 | INFO     | extracted standard info from prmon json
[2025-11-25 22:30:29] 2025-11-26 03:29:41,500 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:30:29] 2025-11-26 03:29:41,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:30:29] 2025-11-26 03:29:41,515 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:30:29] 2025-11-26 03:29:41,516 | INFO     | sum of square deviations: 428678518941.04834
[2025-11-25 22:30:29] 2025-11-26 03:29:41,538 | INFO     | sum of deviations: 2009360032628.632
[2025-11-25 22:30:29] 2025-11-26 03:29:41,539 | INFO     | mean x: 1764093762.0789945
[2025-11-25 22:30:29] 2025-11-26 03:29:41,539 | INFO     | mean y: 2867546.958707361
[2025-11-25 22:30:29] 2025-11-26 03:29:41,539 | INFO     | intersect: -8266031739.358179
[2025-11-25 22:30:29] 2025-11-26 03:29:41,540 | INFO     | chi2: 4.759255457889104
[2025-11-25 22:30:29] 2025-11-26 03:29:41,541 | INFO     | sum of square deviations: 422932403271.8639
[2025-11-25 22:30:29] 2025-11-26 03:29:41,563 | INFO     | sum of deviations: 2308834762311.797
[2025-11-25 22:30:29] 2025-11-26 03:29:41,563 | INFO     | mean x: 1764093609.581605
[2025-11-25 22:30:29] 2025-11-26 03:29:41,563 | INFO     | mean y: 2875490.8530207393
[2025-11-25 22:30:29] 2025-11-26 03:29:41,563 | INFO     | intersect: -9627506618.119488
[2025-11-25 22:30:29] 2025-11-26 03:29:41,564 | INFO     | chi2: 2.584927371363549
[2025-11-25 22:30:29] 2025-11-26 03:29:41,564 | INFO     | current chi2=2.584927371363549 (change=45.686307569838775 %)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,565 | INFO     | sum of square deviations: 417237869965.1653
[2025-11-25 22:30:29] 2025-11-26 03:29:41,587 | INFO     | sum of deviations: 2439001026091.091
[2025-11-25 22:30:29] 2025-11-26 03:29:41,588 | INFO     | mean x: 1764093457.0842392
[2025-11-25 22:30:29] 2025-11-26 03:29:41,588 | INFO     | mean y: 2878975.4936594204
[2025-11-25 22:30:29] 2025-11-26 03:29:41,588 | INFO     | intersect: -10309286006.817894
[2025-11-25 22:30:29] 2025-11-26 03:29:41,589 | INFO     | chi2: 2.0859277019504434
[2025-11-25 22:30:29] 2025-11-26 03:29:41,589 | INFO     | current chi2=2.0859277019504434 (change=19.304204634186046 %)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,589 | INFO     | right removable region: 1103
[2025-11-25 22:30:29] 2025-11-26 03:29:41,590 | INFO     | sum of square deviations: 422932009821.86383
[2025-11-25 22:30:29] 2025-11-26 03:29:41,612 | INFO     | sum of deviations: 1760300210218.3647
[2025-11-25 22:30:29] 2025-11-26 03:29:41,612 | INFO     | mean x: 1764093914.581605
[2025-11-25 22:30:29] 2025-11-26 03:29:41,612 | INFO     | mean y: 2874146.6257889993
[2025-11-25 22:30:29] 2025-11-26 03:29:41,613 | INFO     | intersect: -7339523251.932159
[2025-11-25 22:30:29] 2025-11-26 03:29:41,614 | INFO     | chi2: 3.053937763664463
[2025-11-25 22:30:29] 2025-11-26 03:29:41,614 | INFO     | current chi2=3.053937763664463 (change=35.83160663077768 %)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,615 | INFO     | sum of square deviations: 417237083065.16583
[2025-11-25 22:30:29] 2025-11-26 03:29:41,636 | INFO     | sum of deviations: 1682932099495.427
[2025-11-25 22:30:29] 2025-11-26 03:29:41,636 | INFO     | mean x: 1764094067.0842392
[2025-11-25 22:30:29] 2025-11-26 03:29:41,636 | INFO     | mean y: 2876218.070652174
[2025-11-25 22:30:29] 2025-11-26 03:29:41,636 | INFO     | intersect: -7112623943.648718
[2025-11-25 22:30:29] 2025-11-26 03:29:41,637 | INFO     | chi2: 2.9911299710338075
[2025-11-25 22:30:29] 2025-11-26 03:29:41,638 | INFO     | current chi2=2.9911299710338075 (change=2.056616653356146 %)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,638 | INFO     | left removable region: 20
[2025-11-25 22:30:29] 2025-11-26 03:29:41,639 | INFO     | sum of square deviations: 393877820590.3289
[2025-11-25 22:30:29] 2025-11-26 03:29:41,672 | INFO     | sum of deviations: 2007951961463.3538
[2025-11-25 22:30:29] 2025-11-26 03:29:41,673 | INFO     | mean x: 1764094036.588181
[2025-11-25 22:30:29] 2025-11-26 03:29:41,673 | INFO     | mean y: 2891466.0120036933
[2025-11-25 22:30:29] 2025-11-26 03:29:41,673 | INFO     | intersect: -8990293465.457624
[2025-11-25 22:30:29] 2025-11-26 03:29:41,675 | INFO     | chi2: 0.23084885227877847
[2025-11-25 22:30:29] 2025-11-26 03:29:41,675 | INFO     | current memory leak: 5.10 B/s (using 1083 data points, chi2=0.23)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,676 | INFO     | could have reported an average CPU frequency of 2609 MHz (41 samples)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,676 | INFO     | ..............................
[2025-11-25 22:30:29] 2025-11-26 03:29:41,676 | INFO     | . Timing measurements:
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . get job = 0 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . initial setup = 2 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . payload setup = 5 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . stage-in = 0 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . payload execution = 67955 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,677 | INFO     | . stage-out = 3 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,678 | INFO     | . log creation = 0 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,678 | INFO     | ..............................
[2025-11-25 22:30:29] 2025-11-26 03:29:41,832 | INFO     | 
[2025-11-25 22:30:29] 2025-11-26 03:29:41,832 | INFO     | job summary report
[2025-11-25 22:30:29] 2025-11-26 03:29:41,832 | INFO     | --------------------------------------------------
[2025-11-25 22:30:29] 2025-11-26 03:29:41,832 | INFO     | PanDA job id: 6891590846
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | task id: 47493068
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | errors: (none)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | pilot state: finished 
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | transexitcode: 0
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | exeerrorcode: 0
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | exeerrordiag: 
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | exitcode: 0
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | exitmsg: OK
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | cpuconsumptiontime: 531577 s
[2025-11-25 22:30:29] 2025-11-26 03:29:41,833 | INFO     | nevents: 1000
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | neventsw: 0
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | pid: 29347
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | pgrp: 29347
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | corecount: 8
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | event service: False
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | sizes: {0: 2284247, 4: 2284509, 11: 2284537, 67964: 2340305, 67968: 2349299, 67970: 2349355, 67976: 2349825}
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | --------------------------------------------------
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | 
[2025-11-25 22:30:29] 2025-11-26 03:29:41,834 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 22:30:29] 2025-11-26 03:29:41,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:30:29] 2025-11-26 03:29:41,854 | INFO     | job 6891590846 has completed (purged errors)
[2025-11-25 22:30:29] 2025-11-26 03:29:41,854 | INFO     | overall cleanup function is called
[2025-11-25 22:30:29] 2025-11-26 03:29:42,872 | INFO     | --- collectZombieJob: --- 10, [29347]
[2025-11-25 22:30:29] 2025-11-26 03:29:42,872 | INFO     | zombie collector waiting for pid 29347
[2025-11-25 22:30:29] 2025-11-26 03:29:42,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:30:29] 2025-11-26 03:29:42,872 | INFO     | collected zombie processes
[2025-11-25 22:30:29] 2025-11-26 03:29:42,872 | INFO     | will attempt to kill all subprocesses of pid=29347
[2025-11-25 22:30:29] 2025-11-26 03:29:43,041 | INFO     | process IDs to be killed: [29347] (in reverse order)
[2025-11-25 22:30:29] 2025-11-26 03:29:43,101 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:30:29] 2025-11-26 03:29:43,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:30:29] 2025-11-26 03:29:43,106 | INFO     | did not find any defunct processes belonging to 29347
[2025-11-25 22:30:29] 2025-11-26 03:29:43,111 | INFO     | did not find any defunct processes belonging to 29347
[2025-11-25 22:30:29] 2025-11-26 03:29:43,113 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:30:29] 2025-11-26 03:29:43,113 | INFO     | ready for new job
[2025-11-25 22:30:29] 2025-11-26 03:29:43,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:30:29] 2025-11-26 03:29:43,119 | INFO     | ***************************************
[2025-11-25 22:30:29] 2025-11-26 03:29:43,119 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:30:29] 2025-11-26 03:29:43,119 | INFO     | ***************************************
[2025-11-25 22:30:29] 2025-11-26 03:29:43,119 | INFO     | 
[2025-11-25 22:30:29] 2025-11-26 03:29:43,120 | INFO     | architecture information:
[2025-11-25 22:30:29] 2025-11-26 03:29:43,121 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:30:29] 2025-11-26 03:29:43,139 | INFO     | cat /etc/os-release:
[2025-11-25 22:30:29] NAME="CentOS Linux"
[2025-11-25 22:30:29] VERSION="7 (Core)"
[2025-11-25 22:30:29] ID="centos"
[2025-11-25 22:30:29] ID_LIKE="rhel fedora"
[2025-11-25 22:30:29] VERSION_ID="7"
[2025-11-25 22:30:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:30:29] ANSI_COLOR="0;31"
[2025-11-25 22:30:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:30:29] HOME_URL="https://www.centos.org/"
[2025-11-25 22:30:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:30:29] 
[2025-11-25 22:30:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:30:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:30:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:30:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:30:29] 
[2025-11-25 22:30:29] 2025-11-26 03:29:43,139 | INFO     | ***************************************
[2025-11-25 22:30:29] 2025-11-26 03:29:43,642 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 22:30:29] 2025-11-26 03:29:43,659 | INFO     | sufficient remaining disk space (25738346496 B)
[2025-11-25 22:30:29] 2025-11-26 03:29:43,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:30:29] 2025-11-26 03:29:43,659 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:30:29] 2025-11-26 03:29:43,659 | INFO     | update_server=False
[2025-11-25 22:30:29] 2025-11-26 03:29:43,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:30:29] 2025-11-26 03:29:43,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:30:29] 2025-11-26 03:29:43,672 | INFO     | all data control threads have been joined
[2025-11-25 22:30:29] 2025-11-26 03:29:43,761 | INFO     | all job control threads have been joined
[2025-11-25 22:30:29] 2025-11-26 03:29:44,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:30:29] 2025-11-26 03:29:44,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:30:29] 2025-11-26 03:29:44,530 | INFO     | aborting loop
[2025-11-25 22:30:29] 2025-11-26 03:29:44,664 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:44,665 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:44,674 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:44,677 | INFO     | [data] control thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:44,766 | INFO     | [job] control thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:44,866 | INFO     | all payload control threads have been joined
[2025-11-25 22:30:29] 2025-11-26 03:29:44,886 | INFO     | [job] validate thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,129 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,536 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,567 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,842 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:45,871 | INFO     | [payload] control thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:46,051 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:46,420 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:29:46,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:30:29] 2025-11-26 03:29:50,879 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:30:29] 2025-11-26 03:30:13,493 | INFO     | PID=22918 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 22:30:29] 2025-11-26 03:30:13,494 | INFO     | .. there are 3 such processes running
[2025-11-25 22:30:29] 2025-11-26 03:30:13,494 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:30:29] 2025-11-26 03:30:13,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:30:29] 2025-11-26 03:30:13,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:30:29] 2025-11-26 03:30:24,079 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:30:29] 2025-11-26 03:30:24,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302024656704)>', '<ExcThread(monitor, started 140301565925120)>']
[2025-11-25 22:30:29] 2025-11-26 03:30:24,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:30:29] 2025-11-26 03:30:24,543 | INFO     | [monitor] control thread has ended
[2025-11-25 22:30:29] 2025-11-26 03:30:29,200 | INFO     | all workflow threads have been joined
[2025-11-25 22:30:29] 2025-11-26 03:30:29,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:30:29] 2025-11-26 03:30:29,209 | INFO     | traces error code: 0
[2025-11-25 22:30:29] 2025-11-26 03:30:29,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:30:29] 2025-11-26 03:30:29,343 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:30:29] 2025-11-26 03:30:29,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:30:29] 2025-11-26 03:30:29,349 [wrapper] pilotpid: 22918
[2025-11-25 22:30:29] 2025-11-26 03:30:29,351 [wrapper] Pilot exit status: 0
[2025-11-25 22:30:29] 2025-11-26 03:30:29,360 [wrapper] pandaids: 6891590846
[2025-11-25 22:30:29] 2025-11-26 03:30:29,422 [wrapper] cleanup supervisor_pilot  2165 22919
[2025-11-25 22:30:29] 2025-11-26 03:30:29,425 [wrapper] Test setup, not cleaning
[2025-11-25 22:30:29] 2025-11-26 03:30:29,427 [wrapper] apfmon messages muted
[2025-11-25 22:30:29] 2025-11-26 03:30:29,430 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:30:29] 2025-11-26 03:30:29,432 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:30:29]  *** Error codes and diagnostics ***
[2025-11-25 22:30:29]     "exeErrorCode": 0,
[2025-11-25 22:30:29]     "exeErrorDiag": "",
[2025-11-25 22:30:29]     "pilotErrorCode": 0,
[2025-11-25 22:30:29]     "pilotErrorDiag": "",
[2025-11-25 22:30:29]  *** Listing of results directory ***
[2025-11-25 22:30:29] total 1326476
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 13:01 queuedata.json
[2025-11-25 22:30:29] -rwx------ 1 boincer umatlas     36292 Nov 18 13:02 runpilot2-wrapper.sh
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas       100 Nov 25 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:30:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 03:36 run_atlas
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas       105 Nov 25 03:36 job.xml
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas 410530311 Nov 25 03:36 EVNT.47493065._000555.pool.root.1
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas     15120 Nov 25 03:36 start_atlas.sh
[2025-11-25 22:30:29] drwxrwx--x 2 boincer umatlas      4096 Nov 25 03:36 shared
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas    590093 Nov 25 03:36 input.tar.gz
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas         0 Nov 25 03:36 boinc_lockfile
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas      2769 Nov 25 03:36 pandaJob.out
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas    991858 Nov 25 03:36 agis_schedconf.cvmfs.json
[2025-11-25 22:30:29] drwx------ 5 boincer umatlas      4096 Nov 25 03:36 pilot3
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas       532 Nov 25 22:14 boinc_task_state.xml
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas      5952 Nov 25 22:21 init_data.xml
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas 920436010 Nov 25 22:28 HITS.47493068._005541.pool.root.1
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas      1068 Nov 25 22:29 memory_monitor_summary.json
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas   1516240 Nov 25 22:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas   2284354 Nov 25 22:29 log.47493068._005541.job.log.tgz.1
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas        95 Nov 25 22:29 pilot_heartbeat.json
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas      8660 Nov 25 22:29 heartbeat.json
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas        29 Nov 25 22:30 wrapper_checkpoint.txt
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 22:30 boinc_mmap_file
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas      4821 Nov 25 22:30 pilotlog.txt
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas   9426864 Nov 25 22:30 log.47493068._005541.job.log.1
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas       353 Nov 25 22:30 output.list
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas       620 Nov 25 22:30 runtime_log
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas  11735040 Nov 25 22:30 result.tar.gz
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas      8704 Nov 25 22:30 runtime_log.err
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas       667 Nov 25 22:30 jCsKDm2Cff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm49FKDm1t5pRm.diag
[2025-11-25 22:30:29] -rw-r--r-- 1 boincer umatlas     21296 Nov 25 22:30 stderr.txt
[2025-11-25 22:30:29] HITS file was successfully produced:
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas 920436010 Nov 25 22:28 shared/HITS.pool.root.1
[2025-11-25 22:30:29]  *** Contents of shared directory: ***
[2025-11-25 22:30:29] total 1311840
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas 410530311 Nov 25 03:36 ATLAS.root_0
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas     15120 Nov 25 03:36 start_atlas.sh
[2025-11-25 22:30:29] -rw-r--r-- 2 boincer umatlas    590093 Nov 25 03:36 input.tar.gz
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas 920436010 Nov 25 22:28 HITS.pool.root.1
[2025-11-25 22:30:29] -rw------- 1 boincer umatlas  11735040 Nov 25 22:30 result.tar.gz
22:30:30 (19244): run_atlas exited; CPU time 531187.580369
22:30:30 (19244): called boinc_finish(0)

</stderr_txt>
]]>

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