Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:11:18 (1739362): wrapper (7.7.26015): starting
09:11:18 (1739362): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:11:18] Arguments: --nthreads 8
[2025-11-25 09:11:18] Threads: 8
[2025-11-25 09:11:18] Checking for CVMFS
[2025-11-25 09:11:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:11:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:11:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:11:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:11:18] 2.13.2.0 6892 35377 167572 153284 2 462 21975031 40960001 18140 16776704 0 94342883 99.748 56922294 35478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 09:11:18] CVMFS is ok
[2025-11-25 09:11:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:11:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:11:18] Further information can be found at the LHC@home message board.
[2025-11-25 09:11:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:11:18] Checking for apptainer binary...
[2025-11-25 09:11:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:11:18] Running /usr/bin/apptainer --version
[2025-11-25 09:11:19] apptainer version 1.4.4-1.el9
[2025-11-25 09:11:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:11:19] c-212-5.aglt2.org
[2025-11-25 09:11:19] apptainer works
[2025-11-25 09:11:19] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:11:19] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:11:19] Starting ATLAS job with PandaID=6894238193
[2025-11-25 09:11:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:51:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:51:35] 2025-11-26 07:50:31,541 | INFO     | executing command: lscpu
[2025-11-26 02:51:35] 2025-11-26 07:50:31,608 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:51:35] 2025-11-26 07:50:31,820 | INFO     | time since job start (63532s) is within the limit (172800.0s)
[2025-11-26 02:51:35] 2025-11-26 07:50:33,315 | INFO     | monitor loop #4203: job 0:6894238193 is in state 'finished'
[2025-11-26 02:51:35] 2025-11-26 07:50:33,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:51:35] 2025-11-26 07:50:33,829 | INFO     | time since job start (63534s) is within the limit (172800.0s)
[2025-11-26 02:51:35] 2025-11-26 07:50:35,833 | INFO     | monitor loop #4204: job 0:6894238193 is in state 'finished'
[2025-11-26 02:51:35] 2025-11-26 07:50:35,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:51:35] 2025-11-26 07:50:35,838 | INFO     | time since job start (63536s) is within the limit (172800.0s)
[2025-11-26 02:51:35] 2025-11-26 07:50:37,856 | INFO     | time since job start (63538s) is within the limit (172800.0s)
[2025-11-26 02:51:35] 2025-11-26 07:50:38,338 | INFO     | monitor loop #4205: job 0:6894238193 is in state 'finished'
[2025-11-26 02:51:35] 2025-11-26 07:50:38,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:51:35] 2025-11-26 07:50:39,333 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:51:35] 2025-11-26 07:50:39,503 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3138.8568750000013
[2025-11-26 02:51:35] 2025-11-26 07:50:39,863 | INFO     | time since job start (63540s) is within the limit (172800.0s)
[2025-11-26 02:51:35] 2025-11-26 07:50:39,982 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894238193/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:51:35] 2025-11-26 07:50:39,983 | INFO     | extracted standard info from prmon json
[2025-11-26 02:51:35] 2025-11-26 07:50:39,983 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:51:35] 2025-11-26 07:50:39,983 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:51:35] 2025-11-26 07:50:39,999 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:51:35] 2025-11-26 07:50:40,074 | INFO     | sum of square deviations: 349796313808.56146
[2025-11-26 02:51:35] 2025-11-26 07:50:40,316 | INFO     | sum of deviations: 1372971150094.1523
[2025-11-26 02:51:35] 2025-11-26 07:50:40,317 | INFO     | mean x: 1764111666.9154658
[2025-11-26 02:51:35] 2025-11-26 07:50:40,317 | INFO     | mean y: 2861327.4562920267
[2025-11-26 02:51:35] 2025-11-26 07:50:40,317 | INFO     | intersect: -6921380948.993214
[2025-11-26 02:51:35] 2025-11-26 07:50:40,413 | INFO     | chi2: 19.042874316815706
[2025-11-26 02:51:35] 2025-11-26 07:50:40,414 | INFO     | sum of square deviations: 344780623255.1278
[2025-11-26 02:51:35] 2025-11-26 07:50:40,619 | INFO     | sum of deviations: 1748352721450.465
[2025-11-26 02:51:35] 2025-11-26 07:50:40,619 | INFO     | mean x: 1764111514.4247105
[2025-11-26 02:51:35] 2025-11-26 07:50:40,640 | INFO     | mean y: 2872736.5444015446
[2025-11-26 02:51:35] 2025-11-26 07:50:40,640 | INFO     | intersect: -8942784180.214108
[2025-11-26 02:51:35] 2025-11-26 07:50:40,641 | INFO     | chi2: 15.17816337146518
[2025-11-26 02:51:35] 2025-11-26 07:50:40,641 | INFO     | current chi2=15.17816337146518 (change=20.294787861608757 %)
[2025-11-26 02:51:35] 2025-11-26 07:50:40,641 | INFO     | right removable region: 1035
[2025-11-26 02:51:35] 2025-11-26 07:50:40,642 | INFO     | sum of square deviations: 344779406915.12744
[2025-11-26 02:51:35] 2025-11-26 07:50:40,903 | INFO     | sum of deviations: 979947015047.7686
[2025-11-26 02:51:35] 2025-11-26 07:50:40,903 | INFO     | mean x: 1764111819.4247105
[2025-11-26 02:51:35] 2025-11-26 07:50:40,903 | INFO     | mean y: 2873273.477799228
[2025-11-26 02:51:35] 2025-11-26 07:50:40,903 | INFO     | intersect: -5011162011.063679
[2025-11-26 02:51:35] 2025-11-26 07:50:40,904 | INFO     | chi2: 15.435155542364583
[2025-11-26 02:51:35] 2025-11-26 07:50:40,904 | INFO     | current chi2=15.435155542364583 (change=18.945242794914346 %)
[2025-11-26 02:51:35] 2025-11-26 07:50:40,904 | INFO     | left removable region: 10
[2025-11-26 02:51:35] 2025-11-26 07:50:40,905 | INFO     | sum of square deviations: 333913087272.71826
[2025-11-26 02:51:35] 2025-11-26 07:50:41,037 | INFO     | monitor loop #4206: job 0:6894238193 is in state 'finished'
[2025-11-26 02:51:35] 2025-11-26 07:50:41,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,060 | INFO     | sum of deviations: 1214490019560.3347
[2025-11-26 02:51:35] 2025-11-26 07:50:41,060 | INFO     | mean x: 1764111788.9434147
[2025-11-26 02:51:35] 2025-11-26 07:50:41,060 | INFO     | mean y: 2893055.316097561
[2025-11-26 02:51:35] 2025-11-26 07:50:41,060 | INFO     | intersect: -6413435752.157851
[2025-11-26 02:51:35] 2025-11-26 07:50:41,061 | INFO     | chi2: 9.874467304253374
[2025-11-26 02:51:35] 2025-11-26 07:50:41,061 | INFO     | current memory leak: 3.64 B/s (using 1025 data points, chi2=9.87)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,062 | INFO     | could have reported an average CPU frequency of 3075 MHz (38 samples)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,062 | INFO     | ..............................
[2025-11-26 02:51:35] 2025-11-26 07:50:41,062 | INFO     | . Timing measurements:
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . get job = 0 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . initial setup = 2 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . payload setup = 13 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . stage-in = 0 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . payload execution = 63476 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . stage-out = 13 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | . log creation = 5 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,063 | INFO     | ..............................
[2025-11-26 02:51:35] 2025-11-26 07:50:41,589 | INFO     | 
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | job summary report
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | --------------------------------------------------
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | PanDA job id: 6894238193
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | task id: 47533962
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | errors: (none)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | pilot state: finished 
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | transexitcode: 0
[2025-11-26 02:51:35] 2025-11-26 07:50:41,605 | INFO     | exeerrorcode: 0
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | exeerrordiag: 
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | exitcode: 0
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | exitmsg: OK
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | cpuconsumptiontime: 203331 s
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | nevents: 1000
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | neventsw: 0
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | pid: 1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | pgrp: 1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | corecount: 8
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | event service: False
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | sizes: {0: 2284139, 1: 2284338, 7: 2284600, 12: 2284628, 63495: 2339562, 63496: 2339561, 63510: 2348795, 63521: 2348985}
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | --------------------------------------------------
[2025-11-26 02:51:35] 2025-11-26 07:50:41,606 | INFO     | 
[2025-11-26 02:51:35] 2025-11-26 07:50:41,607 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | job 6894238193 has completed (purged errors)
[2025-11-26 02:51:35] 2025-11-26 07:50:41,694 | INFO     | overall cleanup function is called
[2025-11-26 02:51:35] 2025-11-26 07:50:43,034 | INFO     | --- collectZombieJob: --- 10, [1759202]
[2025-11-26 02:51:35] 2025-11-26 07:50:43,034 | INFO     | zombie collector waiting for pid 1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:43,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:51:35] 2025-11-26 07:50:43,034 | INFO     | collected zombie processes
[2025-11-26 02:51:35] 2025-11-26 07:50:43,034 | INFO     | will attempt to kill all subprocesses of pid=1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:44,139 | INFO     | process IDs to be killed: [1759202] (in reverse order)
[2025-11-26 02:51:35] 2025-11-26 07:50:44,271 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:51:35] 2025-11-26 07:50:44,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:51:35] 2025-11-26 07:50:44,290 | INFO     | did not find any defunct processes belonging to 1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:44,360 | INFO     | did not find any defunct processes belonging to 1759202
[2025-11-26 02:51:35] 2025-11-26 07:50:44,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:51:35] 2025-11-26 07:50:44,361 | INFO     | ready for new job
[2025-11-26 02:51:35] 2025-11-26 07:50:44,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:51:35] 2025-11-26 07:50:44,768 | INFO     | ***************************************
[2025-11-26 02:51:35] 2025-11-26 07:50:44,768 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:51:35] 2025-11-26 07:50:44,768 | INFO     | ***************************************
[2025-11-26 02:51:35] 2025-11-26 07:50:44,768 | INFO     | 
[2025-11-26 02:51:35] 2025-11-26 07:50:44,839 | INFO     | architecture information:
[2025-11-26 02:51:35] 2025-11-26 07:50:45,046 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:51:35] 2025-11-26 07:50:45,336 | INFO     | cat /etc/os-release:
[2025-11-26 02:51:35] NAME="CentOS Linux"
[2025-11-26 02:51:35] VERSION="7 (Core)"
[2025-11-26 02:51:35] ID="centos"
[2025-11-26 02:51:35] ID_LIKE="rhel fedora"
[2025-11-26 02:51:35] VERSION_ID="7"
[2025-11-26 02:51:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:51:35] ANSI_COLOR="0;31"
[2025-11-26 02:51:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:51:35] HOME_URL="https://www.centos.org/"
[2025-11-26 02:51:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:51:35] 
[2025-11-26 02:51:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:51:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:51:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:51:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:51:35] 
[2025-11-26 02:51:35] 2025-11-26 07:50:45,337 | INFO     | ***************************************
[2025-11-26 02:51:35] 2025-11-26 07:50:45,840 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 02:51:35] 2025-11-26 07:50:45,934 | INFO     | sufficient remaining disk space (122898350080 B)
[2025-11-26 02:51:35] 2025-11-26 07:50:45,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:51:35] 2025-11-26 07:50:45,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:51:35] 2025-11-26 07:50:45,935 | INFO     | update_server=False
[2025-11-26 02:51:35] 2025-11-26 07:50:45,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:51:35] 2025-11-26 07:50:46,084 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:51:35] 2025-11-26 07:50:46,084 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:51:35] 2025-11-26 07:50:46,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:51:35] 2025-11-26 07:50:46,084 | INFO     | will abort loop
[2025-11-26 02:51:35] 2025-11-26 07:50:46,576 | INFO     | all data control threads have been joined
[2025-11-26 02:51:35] 2025-11-26 07:50:46,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:51:35] 2025-11-26 07:50:46,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:51:35] 2025-11-26 07:50:46,908 | INFO     | all payload control threads have been joined
[2025-11-26 02:51:35] 2025-11-26 07:50:46,941 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,090 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:51:35] 2025-11-26 07:50:47,247 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,247 | INFO     | [job] validate thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,260 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,393 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,485 | INFO     | all job control threads have been joined
[2025-11-26 02:51:35] 2025-11-26 07:50:47,584 | INFO     | [data] control thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,647 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,851 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,914 | INFO     | [payload] control thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:47,964 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:48,026 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:48,508 | INFO     | [job] control thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:49,220 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:50:50,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:51:35] 2025-11-26 07:51:17,204 | INFO     | PID=1747637 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:51:35] 2025-11-26 07:51:17,204 | INFO     | .. there are 19 such processes running
[2025-11-26 02:51:35] 2025-11-26 07:51:17,204 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:51:35] 2025-11-26 07:51:17,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:51:35] 2025-11-26 07:51:17,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:51:35] 2025-11-26 07:51:28,424 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:51:35] 2025-11-26 07:51:28,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762978658112)>', '<ExcThread(monitor, started 139762631423744)>']
[2025-11-26 02:51:35] 2025-11-26 07:51:29,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:51:35] 2025-11-26 07:51:29,287 | INFO     | [monitor] control thread has ended
[2025-11-26 02:51:35] 2025-11-26 07:51:33,572 | INFO     | all workflow threads have been joined
[2025-11-26 02:51:35] 2025-11-26 07:51:33,592 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:51:35] 2025-11-26 07:51:33,593 | INFO     | traces error code: 0
[2025-11-26 02:51:35] 2025-11-26 07:51:33,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:51:35] 2025-11-26 07:51:34,454 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:51:35] 2025-11-26 07:51:34,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:51:35] 2025-11-26 07:51:34,484 [wrapper] pilotpid: 1747637
[2025-11-26 02:51:35] 2025-11-26 07:51:34,504 [wrapper] Pilot exit status: 0
[2025-11-26 02:51:35] 2025-11-26 07:51:34,598 [wrapper] pandaids: 6894238193
[2025-11-26 02:51:35] 2025-11-26 07:51:34,778 [wrapper] cleanup supervisor_pilot  829729 1747639
[2025-11-26 02:51:35] 2025-11-26 07:51:34,797 [wrapper] Test setup, not cleaning
[2025-11-26 02:51:35] 2025-11-26 07:51:34,820 [wrapper] apfmon messages muted
[2025-11-26 02:51:35] 2025-11-26 07:51:34,840 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:51:35] 2025-11-26 07:51:34,869 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:51:35]  *** Error codes and diagnostics ***
[2025-11-26 02:51:35]     "exeErrorCode": 0,
[2025-11-26 02:51:35]     "exeErrorDiag": "",
[2025-11-26 02:51:35]     "pilotErrorCode": 0,
[2025-11-26 02:51:35]     "pilotErrorDiag": "",
[2025-11-26 02:51:35]  *** Listing of results directory ***
[2025-11-26 02:51:35] total 1323944
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-11-26 02:51:35] -rwx------. 1 boincer umatlas     36292 Nov 24 04:16 runpilot2-wrapper.sh
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 04:16 queuedata.json
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:51:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 09:11 run_atlas
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 09:11 job.xml
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas 409213085 Nov 25 09:11 EVNT.47493127._001006.pool.root.1
[2025-11-26 02:51:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 09:11 shared
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas    590093 Nov 25 09:11 input.tar.gz
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:11 start_atlas.sh
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 09:11 boinc_lockfile
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 09:11 pandaJob.out
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas        57 Nov 25 09:11 setup.sh.local
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas    991909 Nov 25 09:11 agis_schedconf.cvmfs.json
[2025-11-26 02:51:35] drwx------. 5 boincer umatlas      4096 Nov 25 09:11 pilot3
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:25 boinc_task_state.xml
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas 921157909 Nov 26 02:46 HITS.47533962._000053.pool.root.1
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 02:49 init_data.xml
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas      1083 Nov 26 02:50 memory_monitor_summary.json
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas        95 Nov 26 02:50 pilot_heartbeat.json
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:50 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas   2205641 Nov 26 02:50 log.47533962._000053.job.log.tgz.1
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas      8623 Nov 26 02:50 heartbeat.json
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:51 boinc_mmap_file
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:51 wrapper_checkpoint.txt
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas      5011 Nov 26 02:51 pilotlog.txt
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas   8504010 Nov 26 02:51 log.47533962._000053.job.log.1
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas       353 Nov 26 02:51 output.list
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:51 runtime_log
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas  10731520 Nov 26 02:51 result.tar.gz
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 02:51 runtime_log.err
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas       664 Nov 26 02:51 2ZZLDmmrhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDaLKDmf9SbHn.diag
[2025-11-26 02:51:35] -rw-r--r--. 1 boincer umatlas     21813 Nov 26 02:51 stderr.txt
[2025-11-26 02:51:35] HITS file was successfully produced:
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas 921157909 Nov 26 02:46 shared/HITS.pool.root.1
[2025-11-26 02:51:35]  *** Contents of shared directory: ***
[2025-11-26 02:51:35] total 1310280
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas 409213085 Nov 25 09:11 ATLAS.root_0
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas    590093 Nov 25 09:11 input.tar.gz
[2025-11-26 02:51:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:11 start_atlas.sh
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas 921157909 Nov 26 02:46 HITS.pool.root.1
[2025-11-26 02:51:35] -rw-------. 1 boincer umatlas  10731520 Nov 26 02:51 result.tar.gz
02:51:37 (1739362): run_atlas exited; CPU time 203650.193185
02:51:37 (1739362): called boinc_finish(0)

</stderr_txt>
]]>

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