Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:26:12 (3977452): wrapper (7.7.26015): starting
09:26:12 (3977452): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 09:26:12] Arguments: --nthreads 3
[2025-11-25 09:26:12] Threads: 3
[2025-11-25 09:26:12] Checking for CVMFS
[2025-11-25 09:26:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:26:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:26:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:26:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:26:12] 2.9.2.0 3851906 26 55744 153276 1 88 35135862 36864000 0 130560 0 375657 99.999 1364 17714 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 09:26:12] CVMFS is ok
[2025-11-25 09:26:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:26:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:26:12] Further information can be found at the LHC@home message board.
[2025-11-25 09:26:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:26:12] Checking for apptainer binary...
[2025-11-25 09:26:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:26:12] Running /usr/bin/apptainer --version
[2025-11-25 09:26:12] apptainer version 1.4.1-1.1
[2025-11-25 09:26:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:26:12] thA335
[2025-11-25 09:26:12] apptainer works
[2025-11-25 09:26:12] Set ATHENA_PROC_NUMBER=3
[2025-11-25 09:26:12] Set ATHENA_CORE_NUMBER=3
[2025-11-25 09:26:12] Starting ATLAS job with PandaID=6895476640
[2025-11-25 09:26:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:30:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:30:30] 2025-11-25 08:29:42,580 | INFO     | update_server=False
[2025-11-25 09:30:30] 2025-11-25 08:29:42,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:30:30] 2025-11-25 08:29:42,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:30:30] 2025-11-25 08:29:42,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:30:30] 2025-11-25 08:29:42,625 | INFO     | aborting loop
[2025-11-25 09:30:30] 2025-11-25 08:29:43,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:30:30] 2025-11-25 08:29:43,470 | INFO     | all job control threads have been joined
[2025-11-25 09:30:30] 2025-11-25 08:29:43,586 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:43,586 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:43,616 | INFO     | all data control threads have been joined
[2025-11-25 09:30:30] 2025-11-25 08:29:43,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:43,630 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:43,990 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,018 | INFO     | all payload control threads have been joined
[2025-11-25 09:30:30] 2025-11-25 08:29:44,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,412 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,476 | INFO     | [job] control thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,620 | INFO     | [data] control thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,914 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,931 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:44,984 | INFO     | [job] validate thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:45,024 | INFO     | [payload] control thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:45,068 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:45,393 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:29:45,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:30:30] 2025-11-25 08:29:49,695 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:30:30] 2025-11-25 08:30:12,837 | INFO     | PID=3981186 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:30:30] 2025-11-25 08:30:12,837 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:30:30] 2025-11-25 08:30:12,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:30:30] 2025-11-25 08:30:12,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:30:30] 2025-11-25 08:30:23,810 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:30:30] 2025-11-25 08:30:25,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139754544412480)>', '<ExcThread(monitor, started 139754049881856)>']
[2025-11-25 09:30:30] 2025-11-25 08:30:25,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:30:30] 2025-11-25 08:30:25,907 | INFO     | [monitor] control thread has ended
[2025-11-25 09:30:30] 2025-11-25 08:30:30,562 | INFO     | all workflow threads have been joined
[2025-11-25 09:30:30] 2025-11-25 08:30:30,563 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:30:30] 2025-11-25 08:30:30,563 | INFO     | traces error code: 0
[2025-11-25 09:30:30] 2025-11-25 08:30:30,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:30:30] 2025-11-25 08:30:30,608 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:30:30] 2025-11-25 08:30:30,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:30:30] 2025-11-25 08:30:30,614 [wrapper] pilotpid: 3981186
[2025-11-25 09:30:30] 2025-11-25 08:30:30,617 [wrapper] Pilot exit status: 0
[2025-11-25 09:30:30] 2025-11-25 08:30:30,624 [wrapper] pandaids: 6895476640
[2025-11-25 09:30:30] 2025-11-25 08:30:30,640 [wrapper] cleanup supervisor_pilot 3981192 3981187
[2025-11-25 09:30:30] 2025-11-25 08:30:30,643 [wrapper] Test setup, not cleaning
[2025-11-25 09:30:30] 2025-11-25 08:30:30,645 [wrapper] apfmon messages muted
[2025-11-25 09:30:30] 2025-11-25 08:30:30,647 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:30:30] 2025-11-25 08:30:30,650 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:30:30]  *** Error codes and diagnostics ***
[2025-11-25 09:30:30]     "exeErrorCode": 65,
[2025-11-25 09:30:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 09:30:30]     "pilotErrorCode": 1305,
[2025-11-25 09:30:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 09:30:30]  *** Listing of results directory ***
[2025-11-25 09:30:30] total 402668
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc    576529 Nov 24 10:01 pilot3.tar.gz
[2025-11-25 09:30:30] -rwx------ 1 boinc boinc     36292 Nov 24 10:26 runpilot2-wrapper.sh
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      5112 Nov 24 10:26 queuedata.json
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc       100 Nov 25 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:30:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 09:26 run_atlas
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc       105 Nov 25 09:26 job.xml
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc 408137388 Nov 25 09:26 EVNT.47483658._001297.pool.root.1
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc    590102 Nov 25 09:26 input.tar.gz
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc     15847 Nov 25 09:26 start_atlas.sh
[2025-11-25 09:30:30] drwxrwx--x 2 boinc boinc      4096 Nov 25 09:26 shared
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc         0 Nov 25 09:26 boinc_setup_complete
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      6196 Nov 25 09:26 init_data.xml
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc         0 Nov 25 09:26 boinc_lockfile
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      2782 Nov 25 09:26 pandaJob.out
[2025-11-25 09:30:30] -rw------- 1 boinc boinc    991858 Nov 25 09:26 agis_schedconf.cvmfs.json
[2025-11-25 09:30:30] -rw------- 1 boinc boinc   1516227 Nov 25 09:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:30:30] drwx------ 5 boinc boinc      4096 Nov 25 09:26 pilot3
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc       522 Nov 25 09:27 boinc_task_state.xml
[2025-11-25 09:30:30] -rw------- 1 boinc boinc       951 Nov 25 09:27 memory_monitor_summary.json
[2025-11-25 09:30:30] -rw------- 1 boinc boinc     56038 Nov 25 09:27 log.47556149._002831.job.log.tgz.1
[2025-11-25 09:30:30] -rw------- 1 boinc boinc        95 Nov 25 09:29 pilot_heartbeat.json
[2025-11-25 09:30:30] -rw------- 1 boinc boinc      8411 Nov 25 09:29 heartbeat.json
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc        22 Nov 25 09:30 wrapper_checkpoint.txt
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      8192 Nov 25 09:30 boinc_mmap_file
[2025-11-25 09:30:30] -rw------- 1 boinc boinc      4752 Nov 25 09:30 pilotlog.txt
[2025-11-25 09:30:30] -rw------- 1 boinc boinc     93846 Nov 25 09:30 log.47556149._002831.job.log.1
[2025-11-25 09:30:30] -rw------- 1 boinc boinc       186 Nov 25 09:30 output.list
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc       620 Nov 25 09:30 runtime_log
[2025-11-25 09:30:30] -rw------- 1 boinc boinc    174080 Nov 25 09:30 result.tar.gz
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      8744 Nov 25 09:30 runtime_log.err
[2025-11-25 09:30:30] -rw------- 1 boinc boinc       649 Nov 25 09:30 RAMKDmq0hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkaLKDm7U7FRn.diag
[2025-11-25 09:30:30] -rw-r--r-- 1 boinc boinc      7787 Nov 25 09:30 stderr.txt
[2025-11-25 09:30:30] No HITS result produced
[2025-11-25 09:30:30]  *** Contents of shared directory: ***
[2025-11-25 09:30:30] total 399344
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc 408137388 Nov 25 09:26 ATLAS.root_0
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc    590102 Nov 25 09:26 input.tar.gz
[2025-11-25 09:30:30] -rw-r--r-- 2 boinc boinc     15847 Nov 25 09:26 start_atlas.sh
[2025-11-25 09:30:30] -rw------- 1 boinc boinc    174080 Nov 25 09:30 result.tar.gz
09:30:32 (3977452): run_atlas exited; CPU time 31.578653
09:30:32 (3977452): called boinc_finish(0)

</stderr_txt>
]]>

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