Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:30:14 (820195): wrapper (7.7.26015): starting
22:30:14 (820195): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 22:30:14] Arguments: --nthreads 4
[2025-11-27 22:30:14] Threads: 4
[2025-11-27 22:30:14] Checking for CVMFS
[2025-11-27 22:30:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 22:30:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 22:30:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 22:30:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 22:30:14] 2.9.2.0 3057 5412 85028 153385 0 81 36083204 36864001 651 130560 0 2364831 99.982 211231 2978 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 22:30:14] CVMFS is ok
[2025-11-27 22:30:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 22:30:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 22:30:14] Further information can be found at the LHC@home message board.
[2025-11-27 22:30:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 22:30:14] Checking for apptainer binary...
[2025-11-27 22:30:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 22:30:14] Running /usr/bin/apptainer --version
[2025-11-27 22:30:14] apptainer version 1.4.1-1.1
[2025-11-27 22:30:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 22:30:14] thA383a
[2025-11-27 22:30:14] apptainer works
[2025-11-27 22:30:14] Set ATHENA_PROC_NUMBER=4
[2025-11-27 22:30:14] Set ATHENA_CORE_NUMBER=4
[2025-11-27 22:30:14] Starting ATLAS job with PandaID=6895476657
[2025-11-27 22:30:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:18:22]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:18:22] 2025-11-28 04:17:52,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 05:18:22] 2025-11-28 04:17:52,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:18:22] 2025-11-28 04:17:52,159 | INFO     | will abort loop
[2025-11-28 05:18:22] 2025-11-28 04:17:52,411 | INFO     | all payload control threads have been joined
[2025-11-28 05:18:22] 2025-11-28 04:17:52,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:18:22] 2025-11-28 04:17:52,766 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:52,823 | INFO     | [data] control thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:52,873 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:52,874 | INFO     | all job control threads have been joined
[2025-11-28 05:18:22] 2025-11-28 04:17:53,060 | INFO     | [job] validate thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,126 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,164 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:18:22] 2025-11-28 04:17:53,417 | INFO     | [payload] control thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,716 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,737 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,880 | INFO     | [job] control thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:53,896 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:54,117 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:54,187 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:54,613 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:54,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:18:22] 2025-11-28 04:17:55,405 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:18:22] 2025-11-28 04:17:55,625 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:57,362 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:18:22] 2025-11-28 04:17:59,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339035928384)>', '<ExcThread(monitor, started 140338106717952)>']
[2025-11-28 05:18:22] 2025-11-28 04:18:04,197 | INFO     | all workflow threads have been joined
[2025-11-28 05:18:22] 2025-11-28 04:18:04,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:18:22] 2025-11-28 04:18:04,197 | INFO     | traces error code: 0
[2025-11-28 05:18:22] 2025-11-28 04:18:04,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:18:22] 2025-11-28 04:18:21,982 | INFO     | PID=823984 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 05:18:22] 2025-11-28 04:18:21,983 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:18:22] 2025-11-28 04:18:21,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:18:22] 2025-11-28 04:18:21,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:18:22] 2025-11-28 04:18:21,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:18:22] 2025-11-28 04:18:21,983 | INFO     | [monitor] control thread has ended
[2025-11-28 05:18:22] 2025-11-28 04:18:22,059 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:18:22] 2025-11-28 04:18:22,063 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:18:22] 2025-11-28 04:18:22,067 [wrapper] pilotpid: 823984
[2025-11-28 05:18:22] 2025-11-28 04:18:22,071 [wrapper] Pilot exit status: 0
[2025-11-28 05:18:22] 2025-11-28 04:18:22,084 [wrapper] pandaids: 6895476657
[2025-11-28 05:18:22] 2025-11-28 04:18:22,107 [wrapper] cleanup supervisor_pilot  878372 823985
[2025-11-28 05:18:22] 2025-11-28 04:18:22,111 [wrapper] Test setup, not cleaning
[2025-11-28 05:18:22] 2025-11-28 04:18:22,115 [wrapper] apfmon messages muted
[2025-11-28 05:18:22] 2025-11-28 04:18:22,119 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:18:22] 2025-11-28 04:18:22,123 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:18:22]  *** Error codes and diagnostics ***
[2025-11-28 05:18:22]     "exeErrorCode": 0,
[2025-11-28 05:18:22]     "exeErrorDiag": "",
[2025-11-28 05:18:22]     "pilotErrorCode": 0,
[2025-11-28 05:18:22]     "pilotErrorDiag": "",
[2025-11-28 05:18:22]  *** Listing of results directory ***
[2025-11-28 05:18:22] total 1309960
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc    576529 Nov 24 10:01 pilot3.tar.gz
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      5112 Nov 24 10:33 queuedata.json
[2025-11-28 05:18:22] -rwx------ 1 boinc boinc     36292 Nov 24 10:34 runpilot2-wrapper.sh
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc       100 Nov 27 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:18:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 22:30 run_atlas
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc       105 Nov 27 22:30 job.xml
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc 409486438 Nov 27 22:30 EVNT.47483658._001298.pool.root.1
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc    590107 Nov 27 22:30 input.tar.gz
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:30 start_atlas.sh
[2025-11-28 05:18:22] drwxrwx--x 2 boinc boinc      4096 Nov 27 22:30 shared
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc         0 Nov 27 22:30 boinc_setup_complete
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      6379 Nov 27 22:30 init_data.xml
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc         0 Nov 27 22:30 boinc_lockfile
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      2785 Nov 27 22:30 pandaJob.out
[2025-11-28 05:18:22] -rw------- 1 boinc boinc    991540 Nov 27 22:30 agis_schedconf.cvmfs.json
[2025-11-28 05:18:22] drwx------ 5 boinc boinc      4096 Nov 27 22:30 pilot3
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc       531 Nov 28 05:13 boinc_task_state.xml
[2025-11-28 05:18:22] -rw------- 1 boinc boinc 918629223 Nov 28 05:17 HITS.47556149._002848.pool.root.1
[2025-11-28 05:18:22] -rw------- 1 boinc boinc        95 Nov 28 05:17 pilot_heartbeat.json
[2025-11-28 05:18:22] -rw------- 1 boinc boinc      1031 Nov 28 05:17 memory_monitor_summary.json
[2025-11-28 05:18:22] -rw------- 1 boinc boinc   1516240 Nov 28 05:17 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:18:22] -rw------- 1 boinc boinc   1250448 Nov 28 05:17 log.47556149._002848.job.log.tgz.1
[2025-11-28 05:18:22] -rw------- 1 boinc boinc      8572 Nov 28 05:17 heartbeat.json
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc        28 Nov 28 05:17 wrapper_checkpoint.txt
[2025-11-28 05:18:22] -rw------- 1 boinc boinc       746 Nov 28 05:18 pilotlog.txt
[2025-11-28 05:18:22] -rw------- 1 boinc boinc   3444541 Nov 28 05:18 log.47556149._002848.job.log.1
[2025-11-28 05:18:22] -rw------- 1 boinc boinc       353 Nov 28 05:18 output.list
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:18 runtime_log
[2025-11-28 05:18:22] -rw------- 1 boinc boinc   4710400 Nov 28 05:18 result.tar.gz
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:18 boinc_mmap_file
[2025-11-28 05:18:22] -rw------- 1 boinc boinc       666 Nov 28 05:18 sgmKDmk8hh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE0IKDm3VHfUo.diag
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      8903 Nov 28 05:18 runtime_log.err
[2025-11-28 05:18:22] -rw-r--r-- 1 boinc boinc      7198 Nov 28 05:18 stderr.txt
[2025-11-28 05:18:22] HITS file was successfully produced:
[2025-11-28 05:18:22] -rw------- 1 boinc boinc 918629223 Nov 28 05:17 shared/HITS.pool.root.1
[2025-11-28 05:18:22]  *** Contents of shared directory: ***
[2025-11-28 05:18:22] total 1302196
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc 409486438 Nov 27 22:30 ATLAS.root_0
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc    590107 Nov 27 22:30 input.tar.gz
[2025-11-28 05:18:22] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:30 start_atlas.sh
[2025-11-28 05:18:22] -rw------- 1 boinc boinc 918629223 Nov 28 05:17 HITS.pool.root.1
[2025-11-28 05:18:22] -rw------- 1 boinc boinc   4710400 Nov 28 05:18 result.tar.gz
05:18:23 (820195): run_atlas exited; CPU time 95594.917008
05:18:23 (820195): called boinc_finish(0)

</stderr_txt>
]]>

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