Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:09:03 (12282): wrapper (7.7.26015): starting
11:09:03 (12282): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:09:03] Arguments: --nthreads 8
[2025-11-27 11:09:03] Threads: 8
[2025-11-27 11:09:03] Checking for CVMFS
[2025-11-27 11:09:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:09:06] 2.11.2.0 4058 286643 138964 153358 0 85 12772609 25165825 1288 130560 8 146600136 99.882 84860717 3058 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 11:09:06] CVMFS is ok
[2025-11-27 11:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:09:06] Checking for apptainer binary...
[2025-11-27 11:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:09:06] Running /usr/bin/apptainer --version
[2025-11-27 11:09:06] apptainer version 1.3.2-1.el7
[2025-11-27 11:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:09:25] cg-vwn233.simple-grid.lan
[2025-11-27 11:09:25] apptainer works
[2025-11-27 11:09:25] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:09:25] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:09:25] Starting ATLAS job with PandaID=6895351584
[2025-11-27 11:09:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 10:30:45]  *** The last 200 lines of the pilot log: ***
[2025-11-28 10:30:45] 2025-11-28 09:29:55,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:30:45] 2025-11-28 09:29:57,344 | INFO     | time since job start (83816s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:29:58,297 | INFO     | monitor loop #5648: job 0:6895351584 is in state 'finished'
[2025-11-28 10:30:45] 2025-11-28 09:29:58,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:30:45] 2025-11-28 09:29:59,357 | INFO     | time since job start (83818s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:30:00,807 | INFO     | monitor loop #5649: job 0:6895351584 is in state 'finished'
[2025-11-28 10:30:45] 2025-11-28 09:30:00,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:30:45] 2025-11-28 09:30:01,373 | INFO     | time since job start (83820s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:30:03,316 | INFO     | monitor loop #5650: job 0:6895351584 is in state 'finished'
[2025-11-28 10:30:45] 2025-11-28 09:30:03,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:30:45] 2025-11-28 09:30:03,392 | INFO     | time since job start (83822s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:30:05,400 | INFO     | time since job start (83824s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:30:05,825 | INFO     | monitor loop #5651: job 0:6895351584 is in state 'finished'
[2025-11-28 10:30:45] 2025-11-28 09:30:05,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:30:45] 2025-11-28 09:30:07,406 | INFO     | time since job start (83826s) is within the limit (172800.0s)
[2025-11-28 10:30:45] 2025-11-28 09:30:07,957 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 10:30:45] 2025-11-28 09:30:07,960 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 10:30:45] 2025-11-28 09:30:07,975 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895351584/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 10:30:45] 2025-11-28 09:30:07,976 | INFO     | extracted standard info from prmon json
[2025-11-28 10:30:45] 2025-11-28 09:30:07,976 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 10:30:45] 2025-11-28 09:30:07,976 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 10:30:45] 2025-11-28 09:30:08,001 | INFO     | fitting pss+swap vs Time
[2025-11-28 10:30:45] 2025-11-28 09:30:08,004 | INFO     | sum of square deviations: 786902919072.9281
[2025-11-28 10:30:45] 2025-11-28 09:30:08,063 | INFO     | sum of deviations: 2770111682564.0146
[2025-11-28 10:30:45] 2025-11-28 09:30:08,063 | INFO     | mean x: 1764280476.5667155
[2025-11-28 10:30:45] 2025-11-28 09:30:08,063 | INFO     | mean y: 2846887.736070381
[2025-11-28 10:30:45] 2025-11-28 09:30:08,063 | INFO     | intersect: -6207898861.199355
[2025-11-28 10:30:45] 2025-11-28 09:30:08,065 | INFO     | chi2: 21.163511172110187
[2025-11-28 10:30:45] 2025-11-28 09:30:08,067 | INFO     | sum of square deviations: 778281415137.2184
[2025-11-28 10:30:45] 2025-11-28 09:30:08,129 | INFO     | sum of deviations: 3221138851073.0073
[2025-11-28 10:30:45] 2025-11-28 09:30:08,130 | INFO     | mean x: 1764280324.07064
[2025-11-28 10:30:45] 2025-11-28 09:30:08,130 | INFO     | mean y: 2854864.676968359
[2025-11-28 10:30:45] 2025-11-28 09:30:08,130 | INFO     | intersect: -7299120726.048976
[2025-11-28 10:30:45] 2025-11-28 09:30:08,132 | INFO     | chi2: 17.960760128329937
[2025-11-28 10:30:45] 2025-11-28 09:30:08,132 | INFO     | current chi2=17.960760128329937 (change=15.133363352300993 %)
[2025-11-28 10:30:45] 2025-11-28 09:30:08,132 | INFO     | right removable region: 1358
[2025-11-28 10:30:45] 2025-11-28 09:30:08,134 | INFO     | sum of square deviations: 778280527587.2184
[2025-11-28 10:30:45] 2025-11-28 09:30:08,186 | INFO     | sum of deviations: 2188160281794.6313
[2025-11-28 10:30:45] 2025-11-28 09:30:08,187 | INFO     | mean x: 1764280629.07064
[2025-11-28 10:30:45] 2025-11-28 09:30:08,187 | INFO     | mean y: 2857180.253863135
[2025-11-28 10:30:45] 2025-11-28 09:30:08,187 | INFO     | intersect: -4957473525.231235
[2025-11-28 10:30:45] 2025-11-28 09:30:08,189 | INFO     | chi2: 16.346503159688083
[2025-11-28 10:30:45] 2025-11-28 09:30:08,189 | INFO     | current chi2=16.346503159688083 (change=22.760911331055876 %)
[2025-11-28 10:30:45] 2025-11-28 09:30:08,189 | INFO     | left removable region: 10
[2025-11-28 10:30:45] 2025-11-28 09:30:08,191 | INFO     | sum of square deviations: 759534504846.5065
[2025-11-28 10:30:45] 2025-11-28 09:30:08,242 | INFO     | sum of deviations: 2272894881212.392
[2025-11-28 10:30:45] 2025-11-28 09:30:08,242 | INFO     | mean x: 1764280598.579377
[2025-11-28 10:30:45] 2025-11-28 09:30:08,242 | INFO     | mean y: 2875417.043026706
[2025-11-28 10:30:45] 2025-11-28 09:30:08,242 | INFO     | intersect: -5276706110.782075
[2025-11-28 10:30:45] 2025-11-28 09:30:08,244 | INFO     | chi2: 9.327532948912857
[2025-11-28 10:30:45] 2025-11-28 09:30:08,244 | INFO     | current memory leak: 2.99 B/s (using 1348 data points, chi2=9.33)
[2025-11-28 10:30:45] 2025-11-28 09:30:08,246 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 10:30:45] 2025-11-28 09:30:08,246 | INFO     | ..............................
[2025-11-28 10:30:45] 2025-11-28 09:30:08,246 | INFO     | . Timing measurements:
[2025-11-28 10:30:45] 2025-11-28 09:30:08,246 | INFO     | . get job = 0 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,246 | INFO     | . initial setup = 12 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | . payload setup = 170 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | . stage-in = 0 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | . payload execution = 83355 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | . stage-out = 10 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | . log creation = 1 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,247 | INFO     | ..............................
[2025-11-28 10:30:45] 2025-11-28 09:30:08,533 | INFO     | 
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | job summary report
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | --------------------------------------------------
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | PanDA job id: 6895351584
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | task id: 47556137
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | errors: (none)
[2025-11-28 10:30:45] 2025-11-28 09:30:08,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | pilot state: finished 
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | transexitcode: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | exeerrorcode: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | exeerrordiag: 
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | exitcode: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | exitmsg: OK
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | cpuconsumptiontime: 315061 s
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | nevents: 1000
[2025-11-28 10:30:45] 2025-11-28 09:30:08,535 | INFO     | neventsw: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | pid: 22651
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | pgrp: 22651
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | corecount: 8
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | event service: False
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 95: 2285321, 99
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | --------------------------------------------------
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | 
[2025-11-28 10:30:45] 2025-11-28 09:30:08,536 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-28 10:30:45] 2025-11-28 09:30:09,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,068 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,068 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,068 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,070 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 10:30:45] 2025-11-28 09:30:09,070 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,070 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 10:30:45] 2025-11-28 09:30:09,070 | INFO     | job 6895351584 has completed (purged errors)
[2025-11-28 10:30:45] 2025-11-28 09:30:09,070 | INFO     | overall cleanup function is called
[2025-11-28 10:30:45] 2025-11-28 09:30:10,094 | INFO     | --- collectZombieJob: --- 10, [22651]
[2025-11-28 10:30:45] 2025-11-28 09:30:10,095 | INFO     | zombie collector waiting for pid 22651
[2025-11-28 10:30:45] 2025-11-28 09:30:10,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 10:30:45] 2025-11-28 09:30:10,095 | INFO     | collected zombie processes
[2025-11-28 10:30:45] 2025-11-28 09:30:10,095 | INFO     | will attempt to kill all subprocesses of pid=22651
[2025-11-28 10:30:45] 2025-11-28 09:30:10,227 | INFO     | process IDs to be killed: [22651] (in reverse order)
[2025-11-28 10:30:45] 2025-11-28 09:30:11,180 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 10:30:45] 2025-11-28 09:30:11,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 10:30:45] 2025-11-28 09:30:11,184 | INFO     | did not find any defunct processes belonging to 22651
[2025-11-28 10:30:45] 2025-11-28 09:30:11,187 | INFO     | did not find any defunct processes belonging to 22651
[2025-11-28 10:30:45] 2025-11-28 09:30:11,233 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 10:30:45] 2025-11-28 09:30:11,233 | INFO     | ready for new job
[2025-11-28 10:30:45] 2025-11-28 09:30:11,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 10:30:45] 2025-11-28 09:30:11,238 | INFO     | ***************************************
[2025-11-28 10:30:45] 2025-11-28 09:30:11,238 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 10:30:45] 2025-11-28 09:30:11,238 | INFO     | ***************************************
[2025-11-28 10:30:45] 2025-11-28 09:30:11,238 | INFO     | 
[2025-11-28 10:30:45] 2025-11-28 09:30:11,239 | INFO     | pilot is running in a VM
[2025-11-28 10:30:45] 2025-11-28 09:30:11,239 | INFO     | architecture information:
[2025-11-28 10:30:45] 2025-11-28 09:30:11,244 | INFO     | executing command: cat /etc/os-release
[2025-11-28 10:30:45] 2025-11-28 09:30:11,486 | INFO     | cat /etc/os-release:
[2025-11-28 10:30:45] NAME="CentOS Linux"
[2025-11-28 10:30:45] VERSION="7 (Core)"
[2025-11-28 10:30:45] ID="centos"
[2025-11-28 10:30:45] ID_LIKE="rhel fedora"
[2025-11-28 10:30:45] VERSION_ID="7"
[2025-11-28 10:30:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 10:30:45] ANSI_COLOR="0;31"
[2025-11-28 10:30:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 10:30:45] HOME_URL="https://www.centos.org/"
[2025-11-28 10:30:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 10:30:45] 
[2025-11-28 10:30:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 10:30:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 10:30:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 10:30:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 10:30:45] 
[2025-11-28 10:30:45] 2025-11-28 09:30:11,486 | INFO     | ***************************************
[2025-11-28 10:30:45] 2025-11-28 09:30:11,990 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-28 10:30:45] 2025-11-28 09:30:12,184 | INFO     | sufficient remaining disk space (495225667584 B)
[2025-11-28 10:30:45] 2025-11-28 09:30:12,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 10:30:45] 2025-11-28 09:30:12,185 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 10:30:45] 2025-11-28 09:30:12,185 | INFO     | update_server=False
[2025-11-28 10:30:45] 2025-11-28 09:30:12,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 10:30:45] 2025-11-28 09:30:12,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:30:45] 2025-11-28 09:30:12,185 | INFO     | aborting loop
[2025-11-28 10:30:45] 2025-11-28 09:30:12,226 | INFO     | all job control threads have been joined
[2025-11-28 10:30:45] 2025-11-28 09:30:12,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 10:30:45] 2025-11-28 09:30:12,566 | INFO     | all payload control threads have been joined
[2025-11-28 10:30:45] 2025-11-28 09:30:13,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 10:30:45] 2025-11-28 09:30:13,154 | INFO     | all data control threads have been joined
[2025-11-28 10:30:45] 2025-11-28 09:30:13,191 | INFO     | [job] retrieve thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:13,191 | INFO     | [job] job monitor thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:13,233 | INFO     | [job] control thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:13,378 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:30:45] 2025-11-28 09:30:13,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:13,573 | INFO     | [payload] control thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:13,578 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,160 | INFO     | [data] control thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,380 | INFO     | [data] copytool_out thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,383 | INFO     | [job] queue monitor thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,397 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,429 | INFO     | [payload] validate_post thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,442 | INFO     | [data] copytool_in thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,446 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,488 | INFO     | [job] validate thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:14,734 | INFO     | [payload] failed_post thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:17,105 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 10:30:45] 2025-11-28 09:30:27,360 | INFO     | [monitor] cgroup control has ended
[2025-11-28 10:30:45] 2025-11-28 09:30:29,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140488885565248)>', '<ExcThread(monitor, started 140488658577152)>']
[2025-11-28 10:30:45] 2025-11-28 09:30:34,285 | INFO     | all workflow threads have been joined
[2025-11-28 10:30:45] 2025-11-28 09:30:34,286 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 10:30:45] 2025-11-28 09:30:34,286 | INFO     | traces error code: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:34,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 10:30:45] 2025-11-28 09:30:40,610 | INFO     | PID=16066 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 10:30:45] 2025-11-28 09:30:40,610 | INFO     | .. there are 9 such processes running
[2025-11-28 10:30:45] 2025-11-28 09:30:40,610 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 10:30:45] 2025-11-28 09:30:40,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 10:30:45] 2025-11-28 09:30:40,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 10:30:45] 2025-11-28 09:30:40,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 10:30:45] 2025-11-28 09:30:40,611 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 10:30:45] 2025-11-28 09:30:40,611 | INFO     | [monitor] control thread has ended
[2025-11-28 10:30:45] 2025-11-28 09:30:40,972 [wrapper] ==== pilot stdout END ====
[2025-11-28 10:30:45] 2025-11-28 09:30:41,071 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 10:30:45] 2025-11-28 09:30:41,140 [wrapper] pilotpid: 16066
[2025-11-28 10:30:45] 2025-11-28 09:30:41,205 [wrapper] Pilot exit status: 0
[2025-11-28 10:30:45] 2025-11-28 09:30:41,592 [wrapper] pandaids: 6895351584
[2025-11-28 10:30:45] 2025-11-28 09:30:42,271 [wrapper] cleanup supervisor_pilot 26375 16067
[2025-11-28 10:30:45] 2025-11-28 09:30:42,305 [wrapper] Test setup, not cleaning
[2025-11-28 10:30:45] 2025-11-28 09:30:42,348 [wrapper] apfmon messages muted
[2025-11-28 10:30:45] 2025-11-28 09:30:42,384 [wrapper] ==== wrapper stdout END ====
[2025-11-28 10:30:45] 2025-11-28 09:30:42,422 [wrapper] ==== wrapper stderr END ====
[2025-11-28 10:30:45]  *** Error codes and diagnostics ***
[2025-11-28 10:30:45]     "exeErrorCode": 0,
[2025-11-28 10:30:45]     "exeErrorDiag": "",
[2025-11-28 10:30:45]     "pilotErrorCode": 0,
[2025-11-28 10:30:45]     "pilotErrorDiag": "",
[2025-11-28 10:30:45]  *** Listing of results directory ***
[2025-11-28 10:30:45] total 1326144
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc    576529 Nov 23 01:28 pilot3.tar.gz
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc      5112 Nov 23 02:08 queuedata.json
[2025-11-28 10:30:45] -rwx------. 1 boinc boinc     36292 Nov 23 02:08 runpilot2-wrapper.sh
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc       100 Nov 27 11:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 10:30:45] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 11:09 run_atlas
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc       105 Nov 27 11:09 job.xml
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc    590101 Nov 27 11:09 input.tar.gz
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc      6392 Nov 27 11:09 init_data.xml
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc 410926835 Nov 27 11:09 EVNT.47483658._000558.pool.root.1
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc     15847 Nov 27 11:09 start_atlas.sh
[2025-11-28 10:30:45] drwxrwx--x. 2 boinc boinc        68 Nov 27 11:09 shared
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc         0 Nov 27 11:09 boinc_lockfile
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc      2786 Nov 27 11:09 pandaJob.out
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc    991551 Nov 27 11:12 agis_schedconf.cvmfs.json
[2025-11-28 10:30:45] drwx------. 5 boinc boinc      4096 Nov 27 11:13 pilot3
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc       533 Nov 28 10:02 boinc_task_state.xml
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc 915942621 Nov 28 10:26 HITS.47556137._005539.pool.root.1
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc      1027 Nov 28 10:28 memory_monitor_summary.json
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc   1516240 Nov 28 10:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc   2442163 Nov 28 10:28 log.47556137._005539.job.log.tgz.1
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc      8640 Nov 28 10:30 heartbeat.json
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc        95 Nov 28 10:30 pilot_heartbeat.json
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc        29 Nov 28 10:30 wrapper_checkpoint.txt
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc       890 Nov 28 10:30 pilotlog.txt
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc  11161551 Nov 28 10:30 log.47556137._005539.job.log.1
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc       353 Nov 28 10:30 output.list
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc       620 Nov 28 10:30 runtime_log
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc  13619200 Nov 28 10:30 result.tar.gz
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc       662 Nov 28 10:30 VPONDmalDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCVKKDm20EJam.diag
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc      8817 Nov 28 10:30 runtime_log.err
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc      8192 Nov 28 10:30 boinc_mmap_file
[2025-11-28 10:30:45] -rw-r--r--. 1 boinc boinc     21411 Nov 28 10:30 stderr.txt
[2025-11-28 10:30:45] HITS file was successfully produced:
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc 915942621 Nov 28 10:26 shared/HITS.pool.root.1
[2025-11-28 10:30:45]  *** Contents of shared directory: ***
[2025-11-28 10:30:45] total 1309668
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc    590101 Nov 27 11:09 input.tar.gz
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc 410926835 Nov 27 11:09 ATLAS.root_0
[2025-11-28 10:30:45] -rw-r--r--. 2 boinc boinc     15847 Nov 27 11:09 start_atlas.sh
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc 915942621 Nov 28 10:26 HITS.pool.root.1
[2025-11-28 10:30:45] -rw-------. 1 boinc boinc  13619200 Nov 28 10:30 result.tar.gz
10:30:47 (12282): run_atlas exited; CPU time 315623.867240
10:30:47 (12282): called boinc_finish(0)

</stderr_txt>
]]>

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