Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:46:30 (12658): wrapper (7.7.26015): starting
02:46:30 (12658): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 02:46:31] Arguments: --nthreads 12
[2025-11-25 02:46:31] Threads: 12
[2025-11-25 02:46:31] Checking for CVMFS
[2025-11-25 02:46:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:46:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:46:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:46:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:46:31] 2.11.2.0 6893 115873 90088 153275 0 82 19524828 20275201 1 130560 0 49597719 99.932 5956700 31105 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 02:46:31] CVMFS is ok
[2025-11-25 02:46:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:46:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:46:31] Further information can be found at the LHC@home message board.
[2025-11-25 02:46:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:46:31] Checking for apptainer binary...
[2025-11-25 02:46:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:46:31] Running /usr/bin/apptainer --version
[2025-11-25 02:46:31] apptainer version 1.3.2-1.el7
[2025-11-25 02:46:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:46:33] c-205-3.aglt2.org
[2025-11-25 02:46:33] apptainer works
[2025-11-25 02:46:33] Set ATHENA_PROC_NUMBER=12
[2025-11-25 02:46:33] Set ATHENA_CORE_NUMBER=12
[2025-11-25 02:46:33] Starting ATLAS job with PandaID=6895475931
[2025-11-25 02:46:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:52:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:52:36] 2025-11-25 14:51:35,669 | INFO     | time since job start (25486s) is within the limit (172800.0s)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,893 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 09:52:36] 2025-11-25 14:51:35,897 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-25 09:52:36] 2025-11-25 14:51:35,900 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895475931/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,901 | INFO     | extracted standard info from prmon json
[2025-11-25 09:52:36] 2025-11-25 14:51:35,901 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:52:36] 2025-11-25 14:51:35,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:52:36] 2025-11-25 14:51:35,909 | INFO     | fitting pss+swap vs Time
[2025-11-25 09:52:36] 2025-11-25 14:51:35,909 | INFO     | sum of square deviations: 22646707001.552902
[2025-11-25 09:52:36] 2025-11-25 14:51:35,913 | INFO     | sum of deviations: 318708397287.8416
[2025-11-25 09:52:36] 2025-11-25 14:51:35,913 | INFO     | mean x: 1764069557.7631578
[2025-11-25 09:52:36] 2025-11-25 14:51:35,913 | INFO     | mean y: 3420523.1196172247
[2025-11-25 09:52:36] 2025-11-25 14:51:35,914 | INFO     | intersect: -24822430821.20234
[2025-11-25 09:52:36] 2025-11-25 14:51:35,914 | INFO     | chi2: 6.1388824785306255
[2025-11-25 09:52:36] 2025-11-25 14:51:35,915 | INFO     | sum of square deviations: 21843739448.7021
[2025-11-25 09:52:36] 2025-11-25 14:51:35,918 | INFO     | sum of deviations: 481899339597.1093
[2025-11-25 09:52:36] 2025-11-25 14:51:35,918 | INFO     | mean x: 1764069405.2663438
[2025-11-25 09:52:36] 2025-11-25 14:51:35,918 | INFO     | mean y: 3451484.317191283
[2025-11-25 09:52:36] 2025-11-25 14:51:35,919 | INFO     | intersect: -38914055447.0259
[2025-11-25 09:52:36] 2025-11-25 14:51:35,919 | INFO     | chi2: 3.009492152963986
[2025-11-25 09:52:36] 2025-11-25 14:51:35,919 | INFO     | current chi2=3.009492152963986 (change=50.97654722192492 %)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,920 | INFO     | sum of square deviations: 21059981558.34322
[2025-11-25 09:52:36] 2025-11-25 14:51:35,923 | INFO     | sum of deviations: 551412819745.5144
[2025-11-25 09:52:36] 2025-11-25 14:51:35,923 | INFO     | mean x: 1764069252.7696078
[2025-11-25 09:52:36] 2025-11-25 14:51:35,923 | INFO     | mean y: 3464983.154411765
[2025-11-25 09:52:36] 2025-11-25 14:51:35,924 | INFO     | intersect: -46185103520.63379
[2025-11-25 09:52:36] 2025-11-25 14:51:35,924 | INFO     | chi2: 2.2821199811006068
[2025-11-25 09:52:36] 2025-11-25 14:51:35,924 | INFO     | current chi2=2.2821199811006068 (change=24.169266271287857 %)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,924 | INFO     | right removable region: 407
[2025-11-25 09:52:36] 2025-11-25 14:51:35,925 | INFO     | sum of square deviations: 21843672348.702084
[2025-11-25 09:52:36] 2025-11-25 14:51:35,928 | INFO     | sum of deviations: 191575128223.68292
[2025-11-25 09:52:36] 2025-11-25 14:51:35,929 | INFO     | mean x: 1764069710.2663438
[2025-11-25 09:52:36] 2025-11-25 14:51:35,929 | INFO     | mean y: 3444578.1210653754
[2025-11-25 09:52:36] 2025-11-25 14:51:35,929 | INFO     | intersect: -15467941164.389881
[2025-11-25 09:52:36] 2025-11-25 14:51:35,929 | INFO     | chi2: 4.005605936219428
[2025-11-25 09:52:36] 2025-11-25 14:51:35,929 | INFO     | current chi2=4.005605936219428 (change=34.75024240603818 %)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,930 | INFO     | sum of square deviations: 21059847358.3432
[2025-11-25 09:52:36] 2025-11-25 14:51:35,933 | INFO     | sum of deviations: 160792322521.7303
[2025-11-25 09:52:36] 2025-11-25 14:51:35,934 | INFO     | mean x: 1764069862.7696078
[2025-11-25 09:52:36] 2025-11-25 14:51:35,934 | INFO     | mean y: 3450559.7524509802
[2025-11-25 09:52:36] 2025-11-25 14:51:35,934 | INFO     | intersect: -13465255338.200943
[2025-11-25 09:52:36] 2025-11-25 14:51:35,934 | INFO     | chi2: 3.9544024117466163
[2025-11-25 09:52:36] 2025-11-25 14:51:35,934 | INFO     | current chi2=3.9544024117466163 (change=1.2782965995186955 %)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,935 | INFO     | left removable region: 20
[2025-11-25 09:52:36] 2025-11-25 14:51:35,935 | INFO     | sum of square deviations: 17972548782.96636
[2025-11-25 09:52:36] 2025-11-25 14:51:35,938 | INFO     | sum of deviations: 355539833434.14716
[2025-11-25 09:52:36] 2025-11-25 14:51:35,938 | INFO     | mean x: 1764069832.2739017
[2025-11-25 09:52:36] 2025-11-25 14:51:35,939 | INFO     | mean y: 3504527.8759689922
[2025-11-25 09:52:36] 2025-11-25 14:51:35,939 | INFO     | intersect: -34893999543.850266
[2025-11-25 09:52:36] 2025-11-25 14:51:35,939 | INFO     | chi2: 0.04674631693075566
[2025-11-25 09:52:36] 2025-11-25 14:51:35,939 | INFO     | current memory leak: 19.78 B/s (using 387 data points, chi2=0.05)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | could have reported an average CPU frequency of 2363 MHz (18 samples)
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | ..............................
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . Timing measurements:
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . get job = 0 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . initial setup = 2 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . payload setup = 8 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . stage-in = 0 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,940 | INFO     | . payload execution = 25447 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,941 | INFO     | . stage-out = 3 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,941 | INFO     | . log creation = 0 s
[2025-11-25 09:52:36] 2025-11-25 14:51:35,941 | INFO     | ..............................
[2025-11-25 09:52:36] 2025-11-25 14:51:36,019 | INFO     | 
[2025-11-25 09:52:36] 2025-11-25 14:51:36,019 | INFO     | job summary report
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | --------------------------------------------------
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | PanDA job id: 6895475931
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | task id: 47556149
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | errors: (none)
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:52:36] 2025-11-25 14:51:36,020 | INFO     | pilot state: finished 
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | transexitcode: 0
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | exeerrorcode: 0
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | exeerrordiag: 
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | exitcode: 0
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | exitmsg: OK
[2025-11-25 09:52:36] 2025-11-25 14:51:36,021 | INFO     | cpuconsumptiontime: 291350 s
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | nevents: 1000
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | neventsw: 0
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | pid: 22911
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | pgrp: 22911
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | corecount: 12
[2025-11-25 09:52:36] 2025-11-25 14:51:36,022 | INFO     | event service: False
[2025-11-25 09:52:36] 2025-11-25 14:51:36,023 | INFO     | sizes: {0: 2284310, 5: 2284572, 11: 2284628, 25459: 2321780, 25463: 2330779, 25465: 2330835, 25470: 2331209}
[2025-11-25 09:52:36] 2025-11-25 14:51:36,023 | INFO     | --------------------------------------------------
[2025-11-25 09:52:36] 2025-11-25 14:51:36,023 | INFO     | 
[2025-11-25 09:52:36] 2025-11-25 14:51:36,023 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 09:52:36] 2025-11-25 14:51:36,046 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:52:36] 2025-11-25 14:51:36,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:52:36] 2025-11-25 14:51:36,050 | INFO     | job 6895475931 has completed (purged errors)
[2025-11-25 09:52:36] 2025-11-25 14:51:36,050 | INFO     | overall cleanup function is called
[2025-11-25 09:52:36] 2025-11-25 14:51:37,065 | INFO     | --- collectZombieJob: --- 10, [22911]
[2025-11-25 09:52:36] 2025-11-25 14:51:37,066 | INFO     | zombie collector waiting for pid 22911
[2025-11-25 09:52:36] 2025-11-25 14:51:37,066 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:52:36] 2025-11-25 14:51:37,066 | INFO     | collected zombie processes
[2025-11-25 09:52:36] 2025-11-25 14:51:37,066 | INFO     | will attempt to kill all subprocesses of pid=22911
[2025-11-25 09:52:36] 2025-11-25 14:51:37,158 | INFO     | process IDs to be killed: [22911] (in reverse order)
[2025-11-25 09:52:36] 2025-11-25 14:51:37,210 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:52:36] 2025-11-25 14:51:37,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:52:36] 2025-11-25 14:51:37,213 | INFO     | did not find any defunct processes belonging to 22911
[2025-11-25 09:52:36] 2025-11-25 14:51:37,215 | INFO     | did not find any defunct processes belonging to 22911
[2025-11-25 09:52:36] 2025-11-25 14:51:37,217 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:52:36] 2025-11-25 14:51:37,217 | INFO     | ready for new job
[2025-11-25 09:52:36] 2025-11-25 14:51:37,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:52:36] 2025-11-25 14:51:37,220 | INFO     | ***************************************
[2025-11-25 09:52:36] 2025-11-25 14:51:37,220 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:52:36] 2025-11-25 14:51:37,220 | INFO     | ***************************************
[2025-11-25 09:52:36] 2025-11-25 14:51:37,220 | INFO     | 
[2025-11-25 09:52:36] 2025-11-25 14:51:37,221 | INFO     | architecture information:
[2025-11-25 09:52:36] 2025-11-25 14:51:37,221 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:52:36] 2025-11-25 14:51:37,238 | INFO     | cat /etc/os-release:
[2025-11-25 09:52:36] NAME="CentOS Linux"
[2025-11-25 09:52:36] VERSION="7 (Core)"
[2025-11-25 09:52:36] ID="centos"
[2025-11-25 09:52:36] ID_LIKE="rhel fedora"
[2025-11-25 09:52:36] VERSION_ID="7"
[2025-11-25 09:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:52:36] ANSI_COLOR="0;31"
[2025-11-25 09:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:52:36] HOME_URL="https://www.centos.org/"
[2025-11-25 09:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:52:36] 
[2025-11-25 09:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:52:36] 
[2025-11-25 09:52:36] 2025-11-25 14:51:37,238 | INFO     | ***************************************
[2025-11-25 09:52:36] 2025-11-25 14:51:37,741 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 09:52:36] 2025-11-25 14:51:37,759 | INFO     | sufficient remaining disk space (28379709440 B)
[2025-11-25 09:52:36] 2025-11-25 14:51:37,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:52:36] 2025-11-25 14:51:37,760 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:52:36] 2025-11-25 14:51:37,760 | INFO     | update_server=False
[2025-11-25 09:52:36] 2025-11-25 14:51:37,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:52:36] 2025-11-25 14:51:37,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:52:36] 2025-11-25 14:51:37,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:52:36] 2025-11-25 14:51:37,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:52:36] 2025-11-25 14:51:37,825 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 09:52:36] 2025-11-25 14:51:37,829 | INFO     | all payload control threads have been joined
[2025-11-25 09:52:36] 2025-11-25 14:51:37,836 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 09:52:36] 2025-11-25 14:51:37,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:52:36] 2025-11-25 14:51:37,837 | INFO     | will abort loop
[2025-11-25 09:52:36] 2025-11-25 14:51:38,381 | INFO     | all job control threads have been joined
[2025-11-25 09:52:36] 2025-11-25 14:51:38,422 | INFO     | all data control threads have been joined
[2025-11-25 09:52:36] 2025-11-25 14:51:38,766 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:38,766 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:38,842 | INFO     | [payload] control thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:38,843 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:38,845 | INFO     | [job] validate thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,018 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,034 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,206 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,297 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,386 | INFO     | [job] control thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,428 | INFO     | [data] control thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:39,767 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:40,162 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:40,199 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:41,767 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:51:48,161 | INFO     | job.realtimelogging is not enabled
[2025-11-25 09:52:36] 2025-11-25 14:51:49,167 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:52:36] 2025-11-25 14:52:08,869 | INFO     | PID=16360 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 09:52:36] 2025-11-25 14:52:08,870 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:52:36] 2025-11-25 14:52:08,870 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:52:36] 2025-11-25 14:52:08,870 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:52:36] 2025-11-25 14:52:30,993 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:52:36] 2025-11-25 14:52:31,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176968509248)>', '<ExcThread(monitor, started 140175720052480)>']
[2025-11-25 09:52:36] 2025-11-25 14:52:31,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:52:36] 2025-11-25 14:52:31,952 | INFO     | [monitor] control thread has ended
[2025-11-25 09:52:36] 2025-11-25 14:52:36,242 | INFO     | all workflow threads have been joined
[2025-11-25 09:52:36] 2025-11-25 14:52:36,248 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:52:36] 2025-11-25 14:52:36,249 | INFO     | traces error code: 0
[2025-11-25 09:52:36] 2025-11-25 14:52:36,249 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:52:36] 2025-11-25 14:52:36,347 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:52:36] 2025-11-25 14:52:36,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:52:36] 2025-11-25 14:52:36,355 [wrapper] pilotpid: 16360
[2025-11-25 09:52:36] 2025-11-25 14:52:36,359 [wrapper] Pilot exit status: 0
[2025-11-25 09:52:36] 2025-11-25 14:52:36,374 [wrapper] pandaids: 6895475931
[2025-11-25 09:52:36] 2025-11-25 14:52:36,421 [wrapper] cleanup supervisor_pilot  6134 16361
[2025-11-25 09:52:36] 2025-11-25 14:52:36,425 [wrapper] Test setup, not cleaning
[2025-11-25 09:52:36] 2025-11-25 14:52:36,428 [wrapper] apfmon messages muted
[2025-11-25 09:52:36] 2025-11-25 14:52:36,432 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:52:36] 2025-11-25 14:52:36,436 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:52:36]  *** Error codes and diagnostics ***
[2025-11-25 09:52:36]     "exeErrorCode": 0,
[2025-11-25 09:52:36]     "exeErrorDiag": "",
[2025-11-25 09:52:36]     "pilotErrorCode": 0,
[2025-11-25 09:52:36]     "pilotErrorDiag": "",
[2025-11-25 09:52:36]  *** Listing of results directory ***
[2025-11-25 09:52:36] total 1305856
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 04:16 queuedata.json
[2025-11-25 09:52:36] -rwx------ 1 boincer umatlas     36292 Nov 24 04:17 runpilot2-wrapper.sh
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas       100 Nov 25 02:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:52:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 02:46 run_atlas
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas       105 Nov 25 02:46 job.xml
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas 409124478 Nov 25 02:46 EVNT.47483658._001294.pool.root.1
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:46 start_atlas.sh
[2025-11-25 09:52:36] drwxrwx--x 2 boincer umatlas      4096 Nov 25 02:46 shared
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 02:46 input.tar.gz
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas         0 Nov 25 02:46 boinc_lockfile
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 02:46 pandaJob.out
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas        57 Nov 25 02:46 setup.sh.local
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas    991830 Nov 25 02:46 agis_schedconf.cvmfs.json
[2025-11-25 09:52:36] drwx------ 5 boincer umatlas      4096 Nov 25 02:46 pilot3
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas       532 Nov 25 09:40 boinc_task_state.xml
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 09:49 init_data.xml
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas 912638018 Nov 25 09:50 HITS.47556149._002803.pool.root.1
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas      1061 Nov 25 09:51 memory_monitor_summary.json
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas   1516240 Nov 25 09:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas   2189399 Nov 25 09:51 log.47556149._002803.job.log.tgz.1
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas      8663 Nov 25 09:51 heartbeat.json
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas        95 Nov 25 09:52 pilot_heartbeat.json
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 09:52 boinc_mmap_file
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas        29 Nov 25 09:52 wrapper_checkpoint.txt
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas      5004 Nov 25 09:52 pilotlog.txt
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas   3570118 Nov 25 09:52 log.47556149._002803.job.log.1
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas       353 Nov 25 09:52 output.list
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas       620 Nov 25 09:52 runtime_log
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas   5775360 Nov 25 09:52 result.tar.gz
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas       669 Nov 25 09:52 ZSyNDmHshh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4zIKDmaQ59Io.diag
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas      9340 Nov 25 09:52 runtime_log.err
[2025-11-25 09:52:36] -rw-r--r-- 1 boincer umatlas     21255 Nov 25 09:52 stderr.txt
[2025-11-25 09:52:36] HITS file was successfully produced:
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas 912638018 Nov 25 09:50 shared/HITS.pool.root.1
[2025-11-25 09:52:36]  *** Contents of shared directory: ***
[2025-11-25 09:52:36] total 1297028
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas 409124478 Nov 25 02:46 ATLAS.root_0
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:46 start_atlas.sh
[2025-11-25 09:52:36] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 02:46 input.tar.gz
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas 912638018 Nov 25 09:50 HITS.pool.root.1
[2025-11-25 09:52:36] -rw------- 1 boincer umatlas   5775360 Nov 25 09:52 result.tar.gz
09:52:37 (12658): run_atlas exited; CPU time 284654.587955
09:52:37 (12658): called boinc_finish(0)

</stderr_txt>
]]>

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