Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 16:24:57 (27148): vboxwrapper version 26210
2025-11-26 16:24:57 (27148): BOINC client version: 8.2.4
2025-11-26 16:24:57 (27148): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-26 16:24:58 (27148): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 16:24:58 (27148): Create VM. (boinc_4af5437dbdf14aed, slot#5)
2025-11-26 16:24:59 (27148): Setting Memory Size for VM. (4800MB)
2025-11-26 16:25:00 (27148): Setting CPU Count for VM. (8)
2025-11-26 16:25:00 (27148): Setting Chipset Options for VM.
2025-11-26 16:25:00 (27148): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 16:25:01 (27148): Setting Boot Options for VM.
2025-11-26 16:25:02 (27148): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 16:25:02 (27148): Enabling VM Network Access.
2025-11-26 16:25:03 (27148): Disabling USB Support for VM.
2025-11-26 16:25:03 (27148): Disabling COM Port Support for VM.
2025-11-26 16:25:03 (27148): Disabling LPT Port Support for VM.
2025-11-26 16:25:04 (27148): Disabling Audio Support for VM.
2025-11-26 16:25:04 (27148): Disabling Clipboard Support for VM.
2025-11-26 16:25:04 (27148): Disabling Drag and Drop Support for VM.
2025-11-26 16:25:05 (27148): Adding storage controller(s) to VM.
2025-11-26 16:25:05 (27148): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 16:25:07 (27148): Adding VirtualBox Guest Additions to VM.
2025-11-26 16:25:07 (27148): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 16:25:07 (27148): forwarding host port 65138 to guest port 80
2025-11-26 16:25:07 (27148): Enabling remote desktop for VM.
2025-11-26 16:25:08 (27148): Required extension pack not installed, remote desktop not enabled.
2025-11-26 16:25:08 (27148): Enabling shared directory for VM.
2025-11-26 16:25:08 (27148): Starting VM using VBoxManage interface. (boinc_4af5437dbdf14aed, slot#5)
2025-11-26 16:25:14 (27148): Successfully started VM. (PID = '30652')
2025-11-26 16:25:14 (27148): Reporting VM Process ID to BOINC.
2025-11-26 16:25:14 (27148): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-26 16:25:14 (27148): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 16:25:14 (27148): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 16:25:14 (27148): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 16:25:14 (27148): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 16:25:14 (27148): Detected: Web Application Enabled (http://localhost:65138)
2025-11-26 16:25:14 (27148): Preference change detected
2025-11-26 16:25:14 (27148): Setting CPU throttle for VM. (100%)
2025-11-26 16:25:14 (27148): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 16:25:16 (27148): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 16:25:16 (27148): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 16:25:34 (27148): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 16:25:34 (27148): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 16:25:34 (27148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 16:26:06 (27148): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 16:26:06 (27148): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 16:26:38 (27148): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000068 main     Log opened 2025-11-26T16:26:36.787008000Z
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000132 main     OS Product: Linux
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000155 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000172 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000187 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000187 main     Process ID: 1391
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000188 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 16:26:38 (27148): Guest Log: 00:00:00.000682 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 16:26:39 (27148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 16:26:39 (27148): Guest Log: [INFO] Mounting shared directory
2025-11-26 16:26:39 (27148): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 16:26:48 (27148): Guest Log: 00:00:10.004381 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 797 485 000ns (GuestNow=1 764 170 807 991 400 000 ns GuestLast=1 764 174 396 788 885 000 ns fSetTimeLastLoop=true )
2025-11-26 16:27:31 (27148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 16:27:31 (27148): Guest Log: [INFO] Detected branch: prod
2025-11-26 16:27:32 (27148): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 16:27:32 (27148): Guest Log: Copying input files
2025-11-26 16:27:35 (27148): Guest Log: Copied input files into RunAtlas.
2025-11-26 16:27:35 (27148): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 16:27:35 (27148): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 16:27:35 (27148): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 16:27:35 (27148): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 16:27:44 (27148): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 16:27:44 (27148): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 16:27:44 (27148): Guest Log: 2.6.3.0 1691 0 30140 153326 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 16:27:48 (27148): Guest Log: copied the webapp to /var/www
2025-11-26 16:27:48 (27148): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-26 16:27:48 (27148): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-26 16:27:48 (27148): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 16:27:48 (27148): Guest Log:  *** Starting ATLAS job. (PandaID=6895338557 taskID=47556137) ***
2025-11-26 18:05:38 (27148): Status Report: Elapsed Time: '6000.000000'
2025-11-26 18:05:38 (27148): Status Report: CPU Time: '39755.031250'
2025-11-26 19:46:05 (27148): Status Report: Elapsed Time: '12000.000000'
2025-11-26 19:46:05 (27148): Status Report: CPU Time: '83079.687500'
2025-11-26 21:26:32 (27148): Status Report: Elapsed Time: '18000.000000'
2025-11-26 21:26:32 (27148): Status Report: CPU Time: '126421.656250'
2025-11-26 23:06:58 (27148): Status Report: Elapsed Time: '24000.000000'
2025-11-26 23:06:58 (27148): Status Report: CPU Time: '169702.828125'
2025-11-27 00:47:25 (27148): Status Report: Elapsed Time: '30000.000000'
2025-11-27 00:47:25 (27148): Status Report: CPU Time: '212999.781250'
2025-11-27 02:27:53 (27148): Status Report: Elapsed Time: '36000.000000'
2025-11-27 02:27:53 (27148): Status Report: CPU Time: '256310.859375'
2025-11-27 02:49:55 (27148): Guest Log:  *** Job finished ***
2025-11-27 02:49:55 (27148): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:03,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:03,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:21,660 | INFO     | [monitor] cgroup control has ended
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:22,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419604215616)>', '<ExcThread(monitor, started 140419165832960)>']
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:22,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:22,567 | INFO     | [monitor] control thread has ended
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:27,178 | INFO     | all workflow threads have been joined
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:27,178 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:27,178 | INFO     | traces error code: 0
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:27,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:30,980 [wrapper] ==== pilot stdout END ====
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:30,983 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:30,986 [wrapper] pilotpid: 6121
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:30,989 [wrapper] Pilot exit status: 0
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,617 [wrapper] pandaids: 6895338557
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,638 [wrapper] cleanup supervisor_pilot 20237 6122
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,641 [wrapper] Test setup, not cleaning
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,644 [wrapper] apfmon messages muted
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,646 [wrapper] ==== wrapper stdout END ====
2025-11-27 02:49:56 (27148): Guest Log: 2025-11-27 01:49:31,649 [wrapper] ==== wrapper stderr END ====
2025-11-27 02:49:56 (27148): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 02:49:56 (27148): Guest Log:     "exeErrorCode": 0,
2025-11-27 02:49:56 (27148): Guest Log:     "exeErrorDiag": "",
2025-11-27 02:49:56 (27148): Guest Log:     "pilotErrorCode": 0,
2025-11-27 02:49:56 (27148): Guest Log:     "pilotErrorDiag": "",
2025-11-27 02:49:56 (27148): Guest Log:  *** Listing of results directory ***
2025-11-27 02:49:58 (27148): Guest Log: total 923296
2025-11-27 02:49:58 (27148): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 09:26 pilot3.tar.gz
2025-11-27 02:49:58 (27148): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 09:28 queuedata.json
2025-11-27 02:49:58 (27148): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 09:29 runpilot2-wrapper.sh
2025-11-27 02:49:58 (27148): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 15:27 start_atlas.sh
2025-11-27 02:49:58 (27148): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 26 15:27 input.tar.gz
2025-11-27 02:49:58 (27148): Guest Log: -rwxr-xr-x. 1 atlas atlas      8757 Nov 26 15:27 init_data.xml
2025-11-27 02:49:58 (27148): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 15:27 EVNT.47483658._000331.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 02:49:58 (27148): Guest Log: -rw-r--r--. 1 atlas atlas      2782 Nov 26 15:27 pandaJob.out
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas    991855 Nov 26 15:28 agis_schedconf.cvmfs.json
2025-11-27 02:49:58 (27148): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 15:28 pilot3
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas 928131604 Nov 27 01:47 HITS.47556137._003271.pool.root.1
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 01:47 memory_monitor_summary.json
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 01:48 agis_ddmendpoints.agis.ALL.json
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas   1850146 Nov 27 01:48 log.47556137._003271.job.log.tgz.1
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 01:48 pilot_heartbeat.json
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas      8600 Nov 27 01:48 heartbeat.json
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 27 01:49 pilotlog.txt
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas   4889627 Nov 27 01:49 log.47556137._003271.job.log.1
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 01:49 output.list
2025-11-27 02:49:58 (27148): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 01:49 runtime_log
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas   6758400 Nov 27 01:49 result.tar.gz
2025-11-27 02:49:58 (27148): Guest Log: -rw-r--r--. 1 atlas atlas      8725 Nov 27 01:49 runtime_log.err
2025-11-27 02:49:58 (27148): Guest Log: -rw-------. 1 atlas atlas       657 Nov 27 01:49 aZJODmH7yg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmM3HKDmIwjcjm.diag
2025-11-27 02:49:59 (27148): Guest Log: Looking for outputfile HITS.47556137._003271.pool.root.1
2025-11-27 02:49:59 (27148): Guest Log: HITS file was successfully produced
2025-11-27 02:49:59 (27148): Guest Log: -rw-------. 1 atlas atlas 928131604 Nov 27 01:47 /home/atlas/RunAtlas/HITS.47556137._003271.pool.root.1
2025-11-27 02:50:07 (27148): Guest Log: Successfully finished the ATLAS job!
2025-11-27 02:50:07 (27148): Guest Log: Copying the results back to the shared directory!
2025-11-27 02:50:07 (27148): Guest Log:  *** Contents of shared directory: ***
2025-11-27 02:50:07 (27148): Guest Log: total 1313376
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root 409379682 Nov 26 15:24 ATLAS.root_0
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root 928131604 Nov 27  2025 HITS.pool.root.1
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root      8757 Nov 26 15:24 init_data.xml
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 26 15:23 input.tar.gz
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root   6758400 Nov 27  2025 result.tar.gz
2025-11-27 02:50:07 (27148): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 15:23 start_atlas.sh
2025-11-27 02:50:07 (27148): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 02:50:08 (27148): VM Completion File Detected.
2025-11-27 02:50:08 (27148): Powering off VM.
2025-11-27 02:50:11 (27148): Successfully stopped VM.
2025-11-27 02:50:11 (27148): Deregistering VM. (boinc_4af5437dbdf14aed, slot#5)
2025-11-27 02:50:11 (27148): Removing network bandwidth throttle group from VM.
2025-11-27 02:50:12 (27148): Removing VM from VirtualBox.
2025-11-27 02:50:19 (27148): called boinc_finish(0)

</stderr_txt>
]]>

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