Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:58 (389): wrapper (7.7.26015): starting
00:59:58 (389): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:59:58] Arguments: --nthreads 8
[2025-11-27 00:59:58] Threads: 8
[2025-11-27 00:59:58] Checking for CVMFS
[2025-11-27 00:59:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:59:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:59:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:00:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:00:01] 2.11.2.0 21973 83280 93736 153340 2 130 16174379 25165824 1344 130560 11 26487866 99.873 15162000 1999 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:00:01] CVMFS is ok
[2025-11-27 01:00:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:00:01] Checking for apptainer binary...
[2025-11-27 01:00:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:00:01] Running /usr/bin/apptainer --version
[2025-11-27 01:00:01] apptainer version 1.3.2-1.el7
[2025-11-27 01:00:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:00:07] cg-vwn333.simple-grid.lan
[2025-11-27 01:00:07] apptainer works
[2025-11-27 01:00:07] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:00:07] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:00:07] Starting ATLAS job with PandaID=6895475288
[2025-11-27 01:00:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:31:33]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:31:33] 2025-11-27 23:30:44,507 | INFO     | PID=4281 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 00:31:33] 2025-11-27 23:30:44,507 | INFO     | .. there are 9 such processes running
[2025-11-28 00:31:33] 2025-11-27 23:30:45,511 | INFO     | time since job start (84410s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:46,998 | INFO     | monitor loop #5679: job 0:6895475288 is in state 'finished'
[2025-11-28 00:31:33] 2025-11-27 23:30:46,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:31:33] 2025-11-27 23:30:47,524 | INFO     | time since job start (84412s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:49,502 | INFO     | monitor loop #5680: job 0:6895475288 is in state 'finished'
[2025-11-28 00:31:33] 2025-11-27 23:30:49,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:31:33] 2025-11-27 23:30:49,537 | INFO     | time since job start (84414s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:51,543 | INFO     | time since job start (84416s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:52,012 | INFO     | monitor loop #5681: job 0:6895475288 is in state 'finished'
[2025-11-28 00:31:33] 2025-11-27 23:30:52,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:31:33] 2025-11-27 23:30:53,550 | INFO     | time since job start (84418s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:54,517 | INFO     | monitor loop #5682: job 0:6895475288 is in state 'finished'
[2025-11-28 00:31:33] 2025-11-27 23:30:54,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,398 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:31:33] 2025-11-27 23:30:55,399 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:31:33] 2025-11-27 23:30:55,400 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895475288/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,401 | INFO     | extracted standard info from prmon json
[2025-11-28 00:31:33] 2025-11-27 23:30:55,401 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:31:33] 2025-11-27 23:30:55,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:31:33] 2025-11-27 23:30:55,434 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:31:33] 2025-11-27 23:30:55,436 | INFO     | sum of square deviations: 804336898166.0417
[2025-11-28 00:31:33] 2025-11-27 23:30:55,493 | INFO     | sum of deviations: 3148698001831.1724
[2025-11-28 00:31:33] 2025-11-27 23:30:55,493 | INFO     | mean x: 1764244222.5829694
[2025-11-28 00:31:33] 2025-11-27 23:30:55,493 | INFO     | mean y: 2843903.349344978
[2025-11-28 00:31:33] 2025-11-27 23:30:55,493 | INFO     | intersect: -6903555978.410692
[2025-11-28 00:31:33] 2025-11-27 23:30:55,495 | INFO     | chi2: 22.731977139087764
[2025-11-28 00:31:33] 2025-11-27 23:30:55,497 | INFO     | sum of square deviations: 795588285632.6565
[2025-11-28 00:31:33] 2025-11-27 23:30:55,550 | INFO     | sum of deviations: 3612128935754.3086
[2025-11-28 00:31:33] 2025-11-27 23:30:55,551 | INFO     | mean x: 1764244070.0869248
[2025-11-28 00:31:33] 2025-11-27 23:30:55,551 | INFO     | mean y: 2851980.9722425127
[2025-11-28 00:31:33] 2025-11-27 23:30:55,551 | INFO     | intersect: -8007166731.440476
[2025-11-28 00:31:33] 2025-11-27 23:30:55,553 | INFO     | chi2: 19.43213360629609
[2025-11-28 00:31:33] 2025-11-27 23:30:55,553 | INFO     | current chi2=19.43213360629609 (change=14.516306754143146 %)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,553 | INFO     | right removable region: 1368
[2025-11-28 00:31:33] 2025-11-27 23:30:55,555 | INFO     | sum of square deviations: 795587377952.6558
[2025-11-28 00:31:33] 2025-11-27 23:30:55,586 | INFO     | time since job start (84420s) is within the limit (172800.0s)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,616 | INFO     | sum of deviations: 2569261283322.842
[2025-11-28 00:31:33] 2025-11-27 23:30:55,616 | INFO     | mean x: 1764244375.0869248
[2025-11-28 00:31:33] 2025-11-27 23:30:55,616 | INFO     | mean y: 2854002.354273192
[2025-11-28 00:31:33] 2025-11-27 23:30:55,616 | INFO     | intersect: -5694577722.738628
[2025-11-28 00:31:33] 2025-11-27 23:30:55,618 | INFO     | chi2: 17.962958572650752
[2025-11-28 00:31:33] 2025-11-27 23:30:55,618 | INFO     | current chi2=17.962958572650752 (change=20.979339092492125 %)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,618 | INFO     | left removable region: 10
[2025-11-28 00:31:33] 2025-11-27 23:30:55,620 | INFO     | sum of square deviations: 776563333407.0557
[2025-11-28 00:31:33] 2025-11-27 23:30:55,671 | INFO     | sum of deviations: 2650620340276.0835
[2025-11-28 00:31:33] 2025-11-27 23:30:55,671 | INFO     | mean x: 1764244344.595729
[2025-11-28 00:31:33] 2025-11-27 23:30:55,671 | INFO     | mean y: 2872700.8416789398
[2025-11-28 00:31:33] 2025-11-27 23:30:55,672 | INFO     | intersect: -6018969618.812709
[2025-11-28 00:31:33] 2025-11-27 23:30:55,673 | INFO     | chi2: 10.45246677023242
[2025-11-28 00:31:33] 2025-11-27 23:30:55,674 | INFO     | current memory leak: 3.41 B/s (using 1358 data points, chi2=10.45)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | ..............................
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . Timing measurements:
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . get job = 0 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . initial setup = 12 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . payload setup = 142 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . stage-in = 0 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . payload execution = 83968 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,675 | INFO     | . stage-out = 5 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,676 | INFO     | . log creation = 2 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,676 | INFO     | ..............................
[2025-11-28 00:31:33] 2025-11-27 23:30:55,790 | INFO     | 
[2025-11-28 00:31:33] 2025-11-27 23:30:55,790 | INFO     | job summary report
[2025-11-28 00:31:33] 2025-11-27 23:30:55,790 | INFO     | --------------------------------------------------
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | PanDA job id: 6895475288
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | task id: 47556149
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | errors: (none)
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | pilot state: finished 
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | transexitcode: 0
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | exeerrorcode: 0
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | exeerrordiag: 
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | exitcode: 0
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | exitmsg: OK
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | cpuconsumptiontime: 316176 s
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | nevents: 1000
[2025-11-28 00:31:33] 2025-11-27 23:30:55,791 | INFO     | neventsw: 0
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | pid: 10897
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | pgrp: 10897
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | corecount: 8
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | event service: False
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 67: 2284616, 77: 2284644, 88: 2284700, 99: 2285008, 10
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | --------------------------------------------------
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | 
[2025-11-28 00:31:33] 2025-11-27 23:30:55,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:31:33] 2025-11-27 23:30:56,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:31:33] 2025-11-27 23:30:56,197 | INFO     | job 6895475288 has completed (purged errors)
[2025-11-28 00:31:33] 2025-11-27 23:30:56,197 | INFO     | overall cleanup function is called
[2025-11-28 00:31:33] 2025-11-27 23:30:57,212 | INFO     | --- collectZombieJob: --- 10, [10897]
[2025-11-28 00:31:33] 2025-11-27 23:30:57,212 | INFO     | zombie collector waiting for pid 10897
[2025-11-28 00:31:33] 2025-11-27 23:30:57,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:31:33] 2025-11-27 23:30:57,213 | INFO     | collected zombie processes
[2025-11-28 00:31:33] 2025-11-27 23:30:57,213 | INFO     | will attempt to kill all subprocesses of pid=10897
[2025-11-28 00:31:33] 2025-11-27 23:30:57,329 | INFO     | process IDs to be killed: [10897] (in reverse order)
[2025-11-28 00:31:33] 2025-11-27 23:30:58,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:31:33] 2025-11-27 23:30:58,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:31:33] 2025-11-27 23:30:58,076 | INFO     | did not find any defunct processes belonging to 10897
[2025-11-28 00:31:33] 2025-11-27 23:30:58,085 | INFO     | did not find any defunct processes belonging to 10897
[2025-11-28 00:31:33] 2025-11-27 23:30:58,140 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:31:33] 2025-11-27 23:30:58,141 | INFO     | ready for new job
[2025-11-28 00:31:33] 2025-11-27 23:30:58,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:31:33] 2025-11-27 23:30:58,146 | INFO     | ***************************************
[2025-11-28 00:31:33] 2025-11-27 23:30:58,146 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:31:33] 2025-11-27 23:30:58,146 | INFO     | ***************************************
[2025-11-28 00:31:33] 2025-11-27 23:30:58,146 | INFO     | 
[2025-11-28 00:31:33] 2025-11-27 23:30:58,146 | INFO     | pilot is running in a VM
[2025-11-28 00:31:33] 2025-11-27 23:30:58,147 | INFO     | architecture information:
[2025-11-28 00:31:33] 2025-11-27 23:30:58,152 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:31:33] 2025-11-27 23:30:58,388 | INFO     | cat /etc/os-release:
[2025-11-28 00:31:33] NAME="CentOS Linux"
[2025-11-28 00:31:33] VERSION="7 (Core)"
[2025-11-28 00:31:33] ID="centos"
[2025-11-28 00:31:33] ID_LIKE="rhel fedora"
[2025-11-28 00:31:33] VERSION_ID="7"
[2025-11-28 00:31:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:31:33] ANSI_COLOR="0;31"
[2025-11-28 00:31:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:31:33] HOME_URL="https://www.centos.org/"
[2025-11-28 00:31:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:31:33] 
[2025-11-28 00:31:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:31:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:31:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:31:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:31:33] 
[2025-11-28 00:31:33] 2025-11-27 23:30:58,389 | INFO     | ***************************************
[2025-11-28 00:31:33] 2025-11-27 23:30:58,891 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-28 00:31:33] 2025-11-27 23:30:59,001 | INFO     | sufficient remaining disk space (495551774720 B)
[2025-11-28 00:31:33] 2025-11-27 23:30:59,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:31:33] 2025-11-27 23:30:59,001 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:31:33] 2025-11-27 23:30:59,001 | INFO     | update_server=False
[2025-11-28 00:31:33] 2025-11-27 23:30:59,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:31:33] 2025-11-27 23:30:59,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:31:33] 2025-11-27 23:30:59,002 | INFO     | aborting loop
[2025-11-28 00:31:33] 2025-11-27 23:30:59,215 | INFO     | all job control threads have been joined
[2025-11-28 00:31:33] 2025-11-27 23:30:59,923 | INFO     | all payload control threads have been joined
[2025-11-28 00:31:33] 2025-11-27 23:30:59,997 | INFO     | all data control threads have been joined
[2025-11-28 00:31:33] 2025-11-27 23:31:00,007 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,008 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:31:33] 2025-11-27 23:31:00,221 | INFO     | [job] control thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:31:33] 2025-11-27 23:31:00,667 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,705 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,706 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:31:33] 2025-11-27 23:31:00,809 | INFO     | [job] validate thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,929 | INFO     | [payload] control thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,978 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:00,992 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:01,003 | INFO     | [data] control thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:01,268 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:01,450 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:01,810 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:02,114 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:04,339 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:31:33] 2025-11-27 23:31:21,690 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:31:33] 2025-11-27 23:31:22,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332305848128)>', '<ExcThread(monitor, started 140331722983168)>']
[2025-11-28 00:31:33] 2025-11-27 23:31:27,857 | INFO     | all workflow threads have been joined
[2025-11-28 00:31:33] 2025-11-27 23:31:27,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:31:33] 2025-11-27 23:31:27,858 | INFO     | traces error code: 0
[2025-11-28 00:31:33] 2025-11-27 23:31:27,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:31:33] 2025-11-27 23:31:28,738 | INFO     | PID=4281 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 00:31:33] 2025-11-27 23:31:28,739 | INFO     | .. there are 9 such processes running
[2025-11-28 00:31:33] 2025-11-27 23:31:28,740 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:31:33] 2025-11-27 23:31:28,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:31:33] 2025-11-27 23:31:28,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:31:33] 2025-11-27 23:31:28,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:31:33] 2025-11-27 23:31:28,740 | INFO     | [monitor] control thread has ended
[2025-11-28 00:31:33] 2025-11-27 23:31:28,954 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:31:33] 2025-11-27 23:31:29,043 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:31:33] 2025-11-27 23:31:29,151 [wrapper] pilotpid: 4281
[2025-11-28 00:31:33] 2025-11-27 23:31:29,203 [wrapper] Pilot exit status: 0
[2025-11-28 00:31:33] 2025-11-27 23:31:29,399 [wrapper] pandaids: 6895475288
[2025-11-28 00:31:33] 2025-11-27 23:31:30,242 [wrapper] cleanup supervisor_pilot 28565 4282
[2025-11-28 00:31:33] 2025-11-27 23:31:30,371 [wrapper] Test setup, not cleaning
[2025-11-28 00:31:33] 2025-11-27 23:31:30,438 [wrapper] apfmon messages muted
[2025-11-28 00:31:33] 2025-11-27 23:31:30,534 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:31:33] 2025-11-27 23:31:30,639 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:31:33]  *** Error codes and diagnostics ***
[2025-11-28 00:31:33]     "exeErrorCode": 0,
[2025-11-28 00:31:33]     "exeErrorDiag": "",
[2025-11-28 00:31:33]     "pilotErrorCode": 0,
[2025-11-28 00:31:33]     "pilotErrorDiag": "",
[2025-11-28 00:31:33]  *** Listing of results directory ***
[2025-11-28 00:31:33] total 1327744
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 09:46 pilot3.tar.gz
[2025-11-28 00:31:33] -rwx------. 1 boinc boinc     36292 Nov 24 09:58 runpilot2-wrapper.sh
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 09:58 queuedata.json
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:31:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:59 run_atlas
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:59 job.xml
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc      6390 Nov 27 00:59 init_data.xml
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc 409169502 Nov 27 00:59 EVNT.47483658._001286.pool.root.1
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:59 start_atlas.sh
[2025-11-28 00:31:33] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:59 shared
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc    590105 Nov 27 00:59 input.tar.gz
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:59 boinc_lockfile
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:00 pandaJob.out
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc    991538 Nov 27 01:03 agis_schedconf.cvmfs.json
[2025-11-28 00:31:33] drwx------. 5 boinc boinc      4096 Nov 27 01:03 pilot3
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:03 boinc_task_state.xml
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc 919134367 Nov 28 00:28 HITS.47556149._002727.pool.root.1
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc      1030 Nov 28 00:29 memory_monitor_summary.json
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc   1516240 Nov 28 00:29 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc   2461623 Nov 28 00:29 log.47556149._002727.job.log.tgz.1
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc      8639 Nov 28 00:30 heartbeat.json
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:31 boinc_mmap_file
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:31 wrapper_checkpoint.txt
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc        95 Nov 28 00:31 pilot_heartbeat.json
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc       819 Nov 28 00:31 pilotlog.txt
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc  11245548 Nov 28 00:31 log.47556149._002727.job.log.1
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc       353 Nov 28 00:31 output.list
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:31 runtime_log
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc  13721600 Nov 28 00:31 result.tar.gz
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:31 runtime_log.err
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc       662 Nov 28 00:31 GhBNDmBahh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8YLKDmHipZPn.diag
[2025-11-28 00:31:33] -rw-r--r--. 1 boinc boinc     21498 Nov 28 00:31 stderr.txt
[2025-11-28 00:31:33] HITS file was successfully produced:
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc 919134367 Nov 28 00:28 shared/HITS.pool.root.1
[2025-11-28 00:31:33]  *** Contents of shared directory: ***
[2025-11-28 00:31:33] total 1311172
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc 409169502 Nov 27 00:59 ATLAS.root_0
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:59 start_atlas.sh
[2025-11-28 00:31:33] -rw-r--r--. 2 boinc boinc    590105 Nov 27 00:59 input.tar.gz
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc 919134367 Nov 28 00:28 HITS.pool.root.1
[2025-11-28 00:31:33] -rw-------. 1 boinc boinc  13721600 Nov 28 00:31 result.tar.gz
00:31:35 (389): run_atlas exited; CPU time 316752.720589
00:31:35 (389): called boinc_finish(0)

</stderr_txt>
]]>

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