Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:40:33 (1577879): wrapper (7.7.26015): starting
18:40:33 (1577879): wrapper: running run_atlas (--nthreads 6)
[2025-11-25 18:40:33] Arguments: --nthreads 6
[2025-11-25 18:40:33] Threads: 6
[2025-11-25 18:40:33] Checking for CVMFS
[2025-11-25 18:40:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:40:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:40:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:40:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:40:34] 2.13.3.0 1560231 6 45996 153277 2 88 18549335 20971520 688 130560 0 58502 99.971 2793 75 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-25 18:40:34] CVMFS is ok
[2025-11-25 18:40:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:40:34] Checking for apptainer binary...
[2025-11-25 18:40:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:40:34] Running /usr/bin/apptainer --version
[2025-11-25 18:40:34] apptainer version 1.4.4-1.el9
[2025-11-25 18:40:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:40:34] testio005
[2025-11-25 18:40:34] apptainer works
[2025-11-25 18:40:34] Set ATHENA_PROC_NUMBER=6
[2025-11-25 18:40:34] Set ATHENA_CORE_NUMBER=6
[2025-11-25 18:40:34] Starting ATLAS job with PandaID=6895476660
[2025-11-25 18:40:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:29:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:29:16] 2025-11-25 20:28:43,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:29:16] 2025-11-25 20:28:43,676 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:29:16] 2025-11-25 20:28:43,677 | INFO     | sum of square deviations: 80148552504.92316
[2025-11-26 05:29:16] 2025-11-25 20:28:43,685 | INFO     | sum of deviations: 858315554156.8795
[2025-11-26 05:29:16] 2025-11-25 20:28:43,685 | INFO     | mean x: 1764083069.010989
[2025-11-26 05:29:16] 2025-11-25 20:28:43,686 | INFO     | mean y: 2645758.017268446
[2025-11-26 05:29:16] 2025-11-25 20:28:43,686 | INFO     | intersect: -18889023394.260048
[2025-11-26 05:29:16] 2025-11-25 20:28:43,686 | INFO     | chi2: 8.548016094934454
[2025-11-26 05:29:16] 2025-11-25 20:28:43,687 | INFO     | sum of square deviations: 78275998599.92229
[2025-11-26 05:29:16] 2025-11-25 20:28:43,694 | INFO     | sum of deviations: 1039295959155.1707
[2025-11-26 05:29:16] 2025-11-25 20:28:43,694 | INFO     | mean x: 1764082916.511076
[2025-11-26 05:29:16] 2025-11-25 20:28:43,694 | INFO     | mean y: 2660500.689873418
[2025-11-26 05:29:16] 2025-11-25 20:28:43,694 | INFO     | intersect: -23419643647.933914
[2025-11-26 05:29:16] 2025-11-25 20:28:43,695 | INFO     | chi2: 5.840824022796317
[2025-11-26 05:29:16] 2025-11-25 20:28:43,695 | INFO     | current chi2=5.840824022796317 (change=31.670413837222604 %)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,696 | INFO     | sum of square deviations: 76432840594.92175
[2025-11-26 05:29:16] 2025-11-25 20:28:43,700 | INFO     | sum of deviations: 1106460582213.0278
[2025-11-26 05:29:16] 2025-11-25 20:28:43,700 | INFO     | mean x: 1764082764.0111642
[2025-11-26 05:29:16] 2025-11-25 20:28:43,700 | INFO     | mean y: 2666030.8532695374
[2025-11-26 05:29:16] 2025-11-25 20:28:43,700 | INFO     | intersect: -25534629547.16094
[2025-11-26 05:29:16] 2025-11-25 20:28:43,701 | INFO     | chi2: 4.9461278358946705
[2025-11-26 05:29:16] 2025-11-25 20:28:43,701 | INFO     | current chi2=4.9461278358946705 (change=15.317978823017295 %)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,701 | INFO     | right removable region: 626
[2025-11-26 05:29:16] 2025-11-25 20:28:43,701 | INFO     | sum of square deviations: 78275994329.9223
[2025-11-26 05:29:16] 2025-11-25 20:28:43,706 | INFO     | sum of deviations: 662528754547.3784
[2025-11-26 05:29:16] 2025-11-25 20:28:43,706 | INFO     | mean x: 1764083221.511076
[2025-11-26 05:29:16] 2025-11-25 20:28:43,706 | INFO     | mean y: 2661694.088607595
[2025-11-26 05:29:16] 2025-11-25 20:28:43,706 | INFO     | intersect: -14928555337.01698
[2025-11-26 05:29:16] 2025-11-25 20:28:43,707 | INFO     | chi2: 5.6567345548110435
[2025-11-26 05:29:16] 2025-11-25 20:28:43,707 | INFO     | current chi2=5.6567345548110435 (change=33.824006740426945 %)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,707 | INFO     | sum of square deviations: 76432832054.92175
[2025-11-26 05:29:16] 2025-11-25 20:28:43,711 | INFO     | sum of deviations: 503527384907.26416
[2025-11-26 05:29:16] 2025-11-25 20:28:43,712 | INFO     | mean x: 1764083374.0111642
[2025-11-26 05:29:16] 2025-11-25 20:28:43,712 | INFO     | mean y: 2674845.390749601
[2025-11-26 05:29:16] 2025-11-25 20:28:43,712 | INFO     | intersect: -11618826860.001398
[2025-11-26 05:29:16] 2025-11-25 20:28:43,712 | INFO     | chi2: 3.890028452849596
[2025-11-26 05:29:16] 2025-11-25 20:28:43,712 | INFO     | current chi2=3.890028452849596 (change=31.231907469634873 %)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,713 | INFO     | sum of square deviations: 74618833117.42134
[2025-11-26 05:29:16] 2025-11-25 20:28:43,717 | INFO     | sum of deviations: 465030246408.1057
[2025-11-26 05:29:16] 2025-11-25 20:28:43,717 | INFO     | mean x: 1764083526.511254
[2025-11-26 05:29:16] 2025-11-25 20:28:43,717 | INFO     | mean y: 2678079.5562700965
[2025-11-26 05:29:16] 2025-11-25 20:28:43,717 | INFO     | intersect: -10991224702.695627
[2025-11-26 05:29:16] 2025-11-25 20:28:43,718 | INFO     | chi2: 3.838673932778882
[2025-11-26 05:29:16] 2025-11-25 20:28:43,718 | INFO     | current chi2=3.838673932778882 (change=1.3201579549654652 %)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,718 | INFO     | left removable region: 30
[2025-11-26 05:29:16] 2025-11-25 20:28:43,718 | INFO     | sum of square deviations: 65647163658.91798
[2025-11-26 05:29:16] 2025-11-25 20:28:43,722 | INFO     | sum of deviations: 641794656838.2411
[2025-11-26 05:29:16] 2025-11-25 20:28:43,722 | INFO     | mean x: 1764083648.511745
[2025-11-26 05:29:16] 2025-11-25 20:28:43,722 | INFO     | mean y: 2705423.536912752
[2025-11-26 05:29:16] 2025-11-25 20:28:43,722 | INFO     | intersect: -17243728340.349617
[2025-11-26 05:29:16] 2025-11-25 20:28:43,723 | INFO     | chi2: 0.1802454033477721
[2025-11-26 05:29:16] 2025-11-25 20:28:43,723 | INFO     | current memory leak: 9.78 B/s (using 596 data points, chi2=0.18)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,723 | INFO     | could have reported an average CPU frequency of 3295 MHz (24 samples)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,723 | INFO     | ..............................
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . Timing measurements:
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . get job = 0 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . initial setup = 5 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . payload setup = 5 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . stage-in = 0 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . payload execution = 38842 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . stage-out = 6 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | . log creation = 0 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,724 | INFO     | ..............................
[2025-11-26 05:29:16] 2025-11-25 20:28:43,822 | INFO     | 
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | job summary report
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | --------------------------------------------------
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | PanDA job id: 6895476660
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | task id: 47556149
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | errors: (none)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | pilot state: finished 
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | transexitcode: 0
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | exeerrorcode: 0
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | exeerrordiag: 
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | exitcode: 0
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | exitmsg: OK
[2025-11-26 05:29:16] 2025-11-25 20:28:43,823 | INFO     | cpuconsumptiontime: 221866 s
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | nevents: 1000
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | neventsw: 0
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | pid: 1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | pgrp: 1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | corecount: 6
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | event service: False
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | sizes: {0: 2284032, 1: 2284287, 5: 2284549, 12: 2284605, 38851: 2327309, 38852: 2327308, 38859: 2336544, 38863: 2336734}
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | --------------------------------------------------
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | 
[2025-11-26 05:29:16] 2025-11-25 20:28:43,824 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-26 05:29:16] 2025-11-25 20:28:43,839 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,840 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | job 6895476660 has completed (purged errors)
[2025-11-26 05:29:16] 2025-11-25 20:28:43,841 | INFO     | overall cleanup function is called
[2025-11-26 05:29:16] 2025-11-25 20:28:44,854 | INFO     | --- collectZombieJob: --- 10, [1588422]
[2025-11-26 05:29:16] 2025-11-25 20:28:44,854 | INFO     | zombie collector waiting for pid 1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:44,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:29:16] 2025-11-25 20:28:44,854 | INFO     | collected zombie processes
[2025-11-26 05:29:16] 2025-11-25 20:28:44,854 | INFO     | will attempt to kill all subprocesses of pid=1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:44,926 | INFO     | process IDs to be killed: [1588422] (in reverse order)
[2025-11-26 05:29:16] 2025-11-25 20:28:44,964 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:29:16] 2025-11-25 20:28:44,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:29:16] 2025-11-25 20:28:44,967 | INFO     | did not find any defunct processes belonging to 1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:44,969 | INFO     | did not find any defunct processes belonging to 1588422
[2025-11-26 05:29:16] 2025-11-25 20:28:44,970 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:29:16] 2025-11-25 20:28:44,970 | INFO     | ready for new job
[2025-11-26 05:29:16] 2025-11-25 20:28:44,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:29:16] 2025-11-25 20:28:44,972 | INFO     | ***************************************
[2025-11-26 05:29:16] 2025-11-25 20:28:44,972 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:29:16] 2025-11-25 20:28:44,972 | INFO     | ***************************************
[2025-11-26 05:29:16] 2025-11-25 20:28:44,972 | INFO     | 
[2025-11-26 05:29:16] 2025-11-25 20:28:44,973 | INFO     | architecture information:
[2025-11-26 05:29:16] 2025-11-25 20:28:44,973 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:29:16] 2025-11-25 20:28:44,985 | INFO     | cat /etc/os-release:
[2025-11-26 05:29:16] NAME="CentOS Linux"
[2025-11-26 05:29:16] VERSION="7 (Core)"
[2025-11-26 05:29:16] ID="centos"
[2025-11-26 05:29:16] ID_LIKE="rhel fedora"
[2025-11-26 05:29:16] VERSION_ID="7"
[2025-11-26 05:29:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:29:16] ANSI_COLOR="0;31"
[2025-11-26 05:29:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:29:16] HOME_URL="https://www.centos.org/"
[2025-11-26 05:29:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:29:16] 
[2025-11-26 05:29:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:29:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:29:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:29:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:29:16] 
[2025-11-26 05:29:16] 2025-11-25 20:28:44,985 | INFO     | ***************************************
[2025-11-26 05:29:16] 2025-11-25 20:28:45,488 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-26 05:29:16] 2025-11-25 20:28:45,499 | INFO     | sufficient remaining disk space (89469747200 B)
[2025-11-26 05:29:16] 2025-11-25 20:28:45,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:29:16] 2025-11-25 20:28:45,500 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:29:16] 2025-11-25 20:28:45,500 | INFO     | update_server=False
[2025-11-26 05:29:16] 2025-11-25 20:28:45,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:29:16] 2025-11-25 20:28:45,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:29:16] 2025-11-25 20:28:46,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:29:16] 2025-11-25 20:28:46,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:29:16] 2025-11-25 20:28:46,278 | INFO     | aborting loop
[2025-11-26 05:29:16] 2025-11-25 20:28:46,447 | INFO     | all data control threads have been joined
[2025-11-26 05:29:16] 2025-11-25 20:28:46,492 | INFO     | all payload control threads have been joined
[2025-11-26 05:29:16] 2025-11-25 20:28:46,505 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,505 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,509 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,568 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:29:16] 2025-11-25 20:28:46,627 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,639 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,712 | INFO     | all job control threads have been joined
[2025-11-26 05:29:16] 2025-11-25 20:28:46,806 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:46,957 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,284 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,453 | INFO     | [data] control thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,497 | INFO     | [payload] control thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,565 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,717 | INFO     | [job] control thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:47,744 | INFO     | [job] validate thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:48,025 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:50,589 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:29:16] 2025-11-25 20:28:50,962 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:29:16] 2025-11-25 20:28:51,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692503701312)>', '<ExcThread(monitor, started 140692147906304)>']
[2025-11-26 05:29:16] 2025-11-25 20:28:56,905 | INFO     | all workflow threads have been joined
[2025-11-26 05:29:16] 2025-11-25 20:28:56,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:29:16] 2025-11-25 20:28:56,905 | INFO     | traces error code: 0
[2025-11-26 05:29:16] 2025-11-25 20:28:56,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:29:16] 2025-11-25 20:29:16,362 | INFO     | PID=1581666 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:29:16] 2025-11-25 20:29:16,363 | INFO     | .. there are 2 such processes running
[2025-11-26 05:29:16] 2025-11-25 20:29:16,430 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:29:16] 2025-11-25 20:29:16,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:29:16] 2025-11-25 20:29:16,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:29:16] 2025-11-25 20:29:16,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:29:16] 2025-11-25 20:29:16,431 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 05:29:16] 2025-11-25 20:29:16,431 | INFO     | [monitor] control thread has ended
[2025-11-26 05:29:16] 2025-11-25 20:29:16,503 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:29:16] 2025-11-25 20:29:16,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:29:16] 2025-11-25 20:29:16,507 [wrapper] pilotpid: 1581666
[2025-11-26 05:29:16] 2025-11-25 20:29:16,509 [wrapper] Pilot exit status: 0
[2025-11-26 05:29:16] 2025-11-25 20:29:16,517 [wrapper] pandaids: 6895476660
[2025-11-26 05:29:16] 2025-11-25 20:29:16,538 [wrapper] cleanup supervisor_pilot 1699261 1581667
[2025-11-26 05:29:16] 2025-11-25 20:29:16,540 [wrapper] Test setup, not cleaning
[2025-11-26 05:29:16] 2025-11-25 20:29:16,542 [wrapper] apfmon messages muted
[2025-11-26 05:29:16] 2025-11-25 20:29:16,544 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:29:16] 2025-11-25 20:29:16,546 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:29:16]  *** Error codes and diagnostics ***
[2025-11-26 05:29:16]     "exeErrorCode": 0,
[2025-11-26 05:29:16]     "exeErrorDiag": "",
[2025-11-26 05:29:16]     "pilotErrorCode": 0,
[2025-11-26 05:29:16]     "pilotErrorDiag": "",
[2025-11-26 05:29:16]  *** Listing of results directory ***
[2025-11-26 05:29:16] total 1304288
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc    576529 Nov 24 18:01 pilot3.tar.gz
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc      5112 Nov 24 18:26 queuedata.json
[2025-11-26 05:29:16] -rwx------. 1 boinc boinc     36292 Nov 24 18:31 runpilot2-wrapper.sh
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc       100 Nov 25 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:29:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 18:40 run_atlas
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc       105 Nov 25 18:40 job.xml
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc 410743187 Nov 25 18:40 EVNT.47483658._001299.pool.root.1
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:40 start_atlas.sh
[2025-11-26 05:29:16] drwxrwx--x. 2 boinc boinc        68 Nov 25 18:40 shared
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc    590105 Nov 25 18:40 input.tar.gz
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc         0 Nov 25 18:40 boinc_lockfile
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc      2782 Nov 25 18:40 pandaJob.out
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc    991894 Nov 25 18:40 agis_schedconf.cvmfs.json
[2025-11-26 05:29:16] drwx------. 5 boinc boinc      4096 Nov 25 18:40 pilot3
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc      9370 Nov 25 19:05 init_data.xml
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc       533 Nov 26 05:19 boinc_task_state.xml
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc 906750133 Nov 26 05:28 HITS.47556149._002851.pool.root.1
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc      1029 Nov 26 05:28 memory_monitor_summary.json
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc   1516240 Nov 26 05:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc   1659005 Nov 26 05:28 log.47556149._002851.job.log.tgz.1
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc      8573 Nov 26 05:28 heartbeat.json
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc        29 Nov 26 05:29 wrapper_checkpoint.txt
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc      8192 Nov 26 05:29 boinc_mmap_file
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc        95 Nov 26 05:29 pilot_heartbeat.json
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc       892 Nov 26 05:29 pilotlog.txt
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc   5433173 Nov 26 05:29 log.47556149._002851.job.log.1
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc       353 Nov 26 05:29 output.list
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc       620 Nov 26 05:29 runtime_log
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc   7116800 Nov 26 05:29 result.tar.gz
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc      8792 Nov 26 05:29 runtime_log.err
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc       652 Nov 26 05:29 8scKDmc5hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyaLKDm3HWFzm.diag
[2025-11-26 05:29:16] -rw-r--r--. 1 boinc boinc     20784 Nov 26 05:29 stderr.txt
[2025-11-26 05:29:16] HITS file was successfully produced:
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc 906750133 Nov 26 05:28 shared/HITS.pool.root.1
[2025-11-26 05:29:16]  *** Contents of shared directory: ***
[2025-11-26 05:29:16] total 1294168
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc 410743187 Nov 25 18:40 ATLAS.root_0
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:40 start_atlas.sh
[2025-11-26 05:29:16] -rw-r--r--. 2 boinc boinc    590105 Nov 25 18:40 input.tar.gz
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc 906750133 Nov 26 05:28 HITS.pool.root.1
[2025-11-26 05:29:16] -rw-------. 1 boinc boinc   7116800 Nov 26 05:29 result.tar.gz
05:29:18 (1577879): run_atlas exited; CPU time 221919.210918
05:29:18 (1577879): called boinc_finish(0)

</stderr_txt>
]]>

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