Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:36:21 (13938): wrapper (7.7.26015): starting
02:36:21 (13938): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:36:21] Arguments: --nthreads 8
[2025-11-25 02:36:21] Threads: 8
[2025-11-25 02:36:21] Checking for CVMFS
[2025-11-25 02:36:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:36:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:36:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:36:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:36:21] 2.11.2.0 13817 543627 296900 153275 1 90 13092212 18432001 1725 130560 8 258199830 99.604 266342954 24620 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-25 02:36:21] CVMFS is ok
[2025-11-25 02:36:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:36:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:36:21] Further information can be found at the LHC@home message board.
[2025-11-25 02:36:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:36:21] Checking for apptainer binary...
[2025-11-25 02:36:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:36:21] Running /usr/bin/apptainer --version
[2025-11-25 02:36:21] apptainer version 1.3.2-1.el7
[2025-11-25 02:36:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:36:22] c-9-29.aglt2.org
[2025-11-25 02:36:22] apptainer works
[2025-11-25 02:36:22] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:36:22] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:36:22] Starting ATLAS job with PandaID=6895475904
[2025-11-25 02:36:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:28:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:28:28] 2025-11-26 00:27:54,644 | INFO     | time since job start (60682s) is within the limit (172800.0s)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,489 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 19:28:28] 2025-11-26 00:27:55,496 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9020000000014
[2025-11-25 19:28:28] 2025-11-26 00:27:55,502 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895475904/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,502 | INFO     | extracted standard info from prmon json
[2025-11-25 19:28:28] 2025-11-26 00:27:55,502 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:28:28] 2025-11-26 00:27:55,503 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:28:28] 2025-11-26 00:27:55,524 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:28:28] 2025-11-26 00:27:55,525 | INFO     | sum of square deviations: 305456299507.7931
[2025-11-25 19:28:28] 2025-11-26 00:27:55,551 | INFO     | sum of deviations: 1590903824621.9521
[2025-11-25 19:28:28] 2025-11-26 00:27:55,551 | INFO     | mean x: 1764086533.6874373
[2025-11-25 19:28:28] 2025-11-26 00:27:55,551 | INFO     | mean y: 2859602.2763819094
[2025-11-25 19:28:28] 2025-11-26 00:27:55,551 | INFO     | intersect: -9185007918.968908
[2025-11-25 19:28:28] 2025-11-26 00:27:55,552 | INFO     | chi2: 5.491583190819112
[2025-11-25 19:28:28] 2025-11-26 00:27:55,554 | INFO     | sum of square deviations: 300874757102.9178
[2025-11-25 19:28:28] 2025-11-26 00:27:55,577 | INFO     | sum of deviations: 1902413596042.2808
[2025-11-25 19:28:28] 2025-11-26 00:27:55,577 | INFO     | mean x: 1764086381.1909091
[2025-11-25 19:28:28] 2025-11-26 00:27:55,578 | INFO     | mean y: 2869965.786868687
[2025-11-25 19:28:28] 2025-11-26 00:27:55,578 | INFO     | intersect: -11151345656.970222
[2025-11-25 19:28:28] 2025-11-26 00:27:55,579 | INFO     | chi2: 2.59517414668626
[2025-11-25 19:28:28] 2025-11-26 00:27:55,579 | INFO     | current chi2=2.59517414668626 (change=52.74269629521592 %)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,580 | INFO     | sum of square deviations: 296339262073.0195
[2025-11-25 19:28:28] 2025-11-26 00:27:55,604 | INFO     | sum of deviations: 2012579493155.9612
[2025-11-25 19:28:28] 2025-11-26 00:27:55,604 | INFO     | mean x: 1764086228.6944163
[2025-11-25 19:28:28] 2025-11-26 00:27:55,604 | INFO     | mean y: 2873664.6842639595
[2025-11-25 19:28:28] 2025-11-26 00:27:55,605 | INFO     | intersect: -11977866731.282545
[2025-11-25 19:28:28] 2025-11-26 00:27:55,606 | INFO     | chi2: 2.066158008462171
[2025-11-25 19:28:28] 2025-11-26 00:27:55,606 | INFO     | current chi2=2.066158008462171 (change=20.38461036996619 %)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,606 | INFO     | right removable region: 984
[2025-11-25 19:28:28] 2025-11-26 00:27:55,607 | INFO     | sum of square deviations: 300874339862.9181
[2025-11-25 19:28:28] 2025-11-26 00:27:55,631 | INFO     | sum of deviations: 1359939876320.9192
[2025-11-25 19:28:28] 2025-11-26 00:27:55,631 | INFO     | mean x: 1764086686.1909091
[2025-11-25 19:28:28] 2025-11-26 00:27:55,631 | INFO     | mean y: 2867277.302020202
[2025-11-25 19:28:28] 2025-11-26 00:27:55,631 | INFO     | intersect: -7970733365.846483
[2025-11-25 19:28:28] 2025-11-26 00:27:55,633 | INFO     | chi2: 3.7037496044178115
[2025-11-25 19:28:28] 2025-11-26 00:27:55,633 | INFO     | current chi2=3.7037496044178115 (change=32.55588642252056 %)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,634 | INFO     | sum of square deviations: 296338427593.01935
[2025-11-25 19:28:28] 2025-11-26 00:27:55,666 | INFO     | sum of deviations: 1291512053006.59
[2025-11-25 19:28:28] 2025-11-26 00:27:55,666 | INFO     | mean x: 1764086838.6944163
[2025-11-25 19:28:28] 2025-11-26 00:27:55,666 | INFO     | mean y: 2869577.27106599
[2025-11-25 19:28:28] 2025-11-26 00:27:55,666 | INFO     | intersect: -7685432723.681685
[2025-11-25 19:28:28] 2025-11-26 00:27:55,668 | INFO     | chi2: 3.6419914411543917
[2025-11-25 19:28:28] 2025-11-26 00:27:55,668 | INFO     | current chi2=3.6419914411543917 (change=1.667449743086171 %)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,668 | INFO     | left removable region: 20
[2025-11-25 19:28:28] 2025-11-26 00:27:55,669 | INFO     | sum of square deviations: 277786220704.50696
[2025-11-25 19:28:28] 2025-11-26 00:27:55,695 | INFO     | sum of deviations: 1621534107791.2788
[2025-11-25 19:28:28] 2025-11-26 00:27:55,696 | INFO     | mean x: 1764086808.207469
[2025-11-25 19:28:28] 2025-11-26 00:27:55,696 | INFO     | mean y: 2887529.4336099587
[2025-11-25 19:28:28] 2025-11-26 00:27:55,696 | INFO     | intersect: -10294696423.284937
[2025-11-25 19:28:28] 2025-11-26 00:27:55,697 | INFO     | chi2: 0.155024935680534
[2025-11-25 19:28:28] 2025-11-26 00:27:55,697 | INFO     | current memory leak: 5.84 B/s (using 964 data points, chi2=0.16)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,698 | INFO     | could have reported an average CPU frequency of 2999 MHz (36 samples)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,698 | INFO     | ..............................
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . Timing measurements:
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . get job = 0 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . initial setup = 2 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . payload setup = 4 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . stage-in = 0 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,699 | INFO     | . payload execution = 60649 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,700 | INFO     | . stage-out = 3 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,700 | INFO     | . log creation = 0 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,700 | INFO     | ..............................
[2025-11-25 19:28:28] 2025-11-26 00:27:55,864 | INFO     | 
[2025-11-25 19:28:28] 2025-11-26 00:27:55,864 | INFO     | job summary report
[2025-11-25 19:28:28] 2025-11-26 00:27:55,864 | INFO     | --------------------------------------------------
[2025-11-25 19:28:28] 2025-11-26 00:27:55,864 | INFO     | PanDA job id: 6895475904
[2025-11-25 19:28:28] 2025-11-26 00:27:55,865 | INFO     | task id: 47556149
[2025-11-25 19:28:28] 2025-11-26 00:27:55,865 | INFO     | errors: (none)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:28:28] 2025-11-26 00:27:55,865 | INFO     | pilot state: finished 
[2025-11-25 19:28:28] 2025-11-26 00:27:55,866 | INFO     | transexitcode: 0
[2025-11-25 19:28:28] 2025-11-26 00:27:55,866 | INFO     | exeerrorcode: 0
[2025-11-25 19:28:28] 2025-11-26 00:27:55,866 | INFO     | exeerrordiag: 
[2025-11-25 19:28:28] 2025-11-26 00:27:55,866 | INFO     | exitcode: 0
[2025-11-25 19:28:28] 2025-11-26 00:27:55,866 | INFO     | exitmsg: OK
[2025-11-25 19:28:28] 2025-11-26 00:27:55,867 | INFO     | cpuconsumptiontime: 467837 s
[2025-11-25 19:28:28] 2025-11-26 00:27:55,867 | INFO     | nevents: 1000
[2025-11-25 19:28:28] 2025-11-26 00:27:55,867 | INFO     | neventsw: 0
[2025-11-25 19:28:28] 2025-11-26 00:27:55,867 | INFO     | pid: 25223
[2025-11-25 19:28:28] 2025-11-26 00:27:55,867 | INFO     | pgrp: 25223
[2025-11-25 19:28:28] 2025-11-26 00:27:55,868 | INFO     | corecount: 8
[2025-11-25 19:28:28] 2025-11-26 00:27:55,868 | INFO     | event service: False
[2025-11-25 19:28:28] 2025-11-26 00:27:55,868 | INFO     | sizes: {0: 2284088, 1: 2284287, 4: 2284549, 12: 2284577, 60657: 2336795, 60661: 2345794, 60664: 2345978, 60668: 2346224}
[2025-11-25 19:28:28] 2025-11-26 00:27:55,868 | INFO     | --------------------------------------------------
[2025-11-25 19:28:28] 2025-11-26 00:27:55,868 | INFO     | 
[2025-11-25 19:28:28] 2025-11-26 00:27:55,869 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:28:28] 2025-11-26 00:27:55,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:28:28] 2025-11-26 00:27:55,891 | INFO     | job 6895475904 has completed (purged errors)
[2025-11-25 19:28:28] 2025-11-26 00:27:55,891 | INFO     | overall cleanup function is called
[2025-11-25 19:28:28] 2025-11-26 00:27:56,057 | INFO     | PID=17766 has CPU usage=17.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 19:28:28] 2025-11-26 00:27:56,057 | INFO     | .. there are 4 such processes running
[2025-11-25 19:28:28] 2025-11-26 00:27:56,926 | INFO     | --- collectZombieJob: --- 10, [25223]
[2025-11-25 19:28:28] 2025-11-26 00:27:56,927 | INFO     | zombie collector waiting for pid 25223
[2025-11-25 19:28:28] 2025-11-26 00:27:56,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:28:28] 2025-11-26 00:27:56,927 | INFO     | collected zombie processes
[2025-11-25 19:28:28] 2025-11-26 00:27:56,927 | INFO     | will attempt to kill all subprocesses of pid=25223
[2025-11-25 19:28:28] 2025-11-26 00:27:57,132 | INFO     | process IDs to be killed: [25223] (in reverse order)
[2025-11-25 19:28:28] 2025-11-26 00:27:57,199 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:28:28] 2025-11-26 00:27:57,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:28:28] 2025-11-26 00:27:57,206 | INFO     | did not find any defunct processes belonging to 25223
[2025-11-25 19:28:28] 2025-11-26 00:27:57,210 | INFO     | did not find any defunct processes belonging to 25223
[2025-11-25 19:28:28] 2025-11-26 00:27:57,211 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:28:28] 2025-11-26 00:27:57,211 | INFO     | ready for new job
[2025-11-25 19:28:28] 2025-11-26 00:27:57,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:28:28] 2025-11-26 00:27:57,215 | INFO     | ***************************************
[2025-11-25 19:28:28] 2025-11-26 00:27:57,215 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:28:28] 2025-11-26 00:27:57,215 | INFO     | ***************************************
[2025-11-25 19:28:28] 2025-11-26 00:27:57,215 | INFO     | 
[2025-11-25 19:28:28] 2025-11-26 00:27:57,216 | INFO     | architecture information:
[2025-11-25 19:28:28] 2025-11-26 00:27:57,217 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:28:28] 2025-11-26 00:27:57,226 | INFO     | cat /etc/os-release:
[2025-11-25 19:28:28] NAME="CentOS Linux"
[2025-11-25 19:28:28] VERSION="7 (Core)"
[2025-11-25 19:28:28] ID="centos"
[2025-11-25 19:28:28] ID_LIKE="rhel fedora"
[2025-11-25 19:28:28] VERSION_ID="7"
[2025-11-25 19:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:28:28] ANSI_COLOR="0;31"
[2025-11-25 19:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:28:28] HOME_URL="https://www.centos.org/"
[2025-11-25 19:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:28:28] 
[2025-11-25 19:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:28:28] 
[2025-11-25 19:28:28] 2025-11-26 00:27:57,226 | INFO     | ***************************************
[2025-11-25 19:28:28] 2025-11-26 00:27:57,728 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:28:28] 2025-11-26 00:27:57,747 | INFO     | sufficient remaining disk space (100237574144 B)
[2025-11-25 19:28:28] 2025-11-26 00:27:57,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:28:28] 2025-11-26 00:27:57,748 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:28:28] 2025-11-26 00:27:57,748 | INFO     | update_server=False
[2025-11-25 19:28:28] 2025-11-26 00:27:57,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:28:28] 2025-11-26 00:27:57,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:28:28] 2025-11-26 00:27:57,749 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:28:28] 2025-11-26 00:27:58,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:28:28] 2025-11-26 00:27:58,140 | INFO     | aborting loop
[2025-11-25 19:28:28] 2025-11-26 00:27:58,379 | INFO     | all data control threads have been joined
[2025-11-25 19:28:28] 2025-11-26 00:27:58,754 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:58,755 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,002 | INFO     | all payload control threads have been joined
[2025-11-25 19:28:28] 2025-11-26 00:27:59,073 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,145 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,153 | INFO     | [job] validate thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,187 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,217 | INFO     | all job control threads have been joined
[2025-11-25 19:28:28] 2025-11-26 00:27:59,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:28:28] 2025-11-26 00:27:59,385 | INFO     | [data] control thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,852 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:27:59,896 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:00,007 | INFO     | [payload] control thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:00,012 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:00,086 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:00,223 | INFO     | [job] control thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:01,242 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:01,756 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:28:28] 2025-11-26 00:28:13,221 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:28:28] 2025-11-26 00:28:14,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677739415360)>', '<ExcThread(monitor, started 140676905801472)>']
[2025-11-25 19:28:28] 2025-11-26 00:28:19,853 | INFO     | all workflow threads have been joined
[2025-11-25 19:28:28] 2025-11-26 00:28:19,854 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:28:28] 2025-11-26 00:28:19,854 | INFO     | traces error code: 0
[2025-11-25 19:28:28] 2025-11-26 00:28:19,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:28:28] 2025-11-26 00:28:28,389 | INFO     | PID=17766 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 19:28:28] 2025-11-26 00:28:28,389 | INFO     | .. there are 4 such processes running
[2025-11-25 19:28:28] 2025-11-26 00:28:28,390 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:28:28] 2025-11-26 00:28:28,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:28:28] 2025-11-26 00:28:28,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:28:28] 2025-11-26 00:28:28,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:28:28] 2025-11-26 00:28:28,391 | INFO     | [monitor] control thread has ended
[2025-11-25 19:28:28] 2025-11-26 00:28:28,508 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:28:28] 2025-11-26 00:28:28,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:28:28] 2025-11-26 00:28:28,513 [wrapper] pilotpid: 17766
[2025-11-25 19:28:28] 2025-11-26 00:28:28,515 [wrapper] Pilot exit status: 0
[2025-11-25 19:28:28] 2025-11-26 00:28:28,524 [wrapper] pandaids: 6895475904
[2025-11-25 19:28:28] 2025-11-26 00:28:28,558 [wrapper] cleanup supervisor_pilot  7216 17767
[2025-11-25 19:28:28] 2025-11-26 00:28:28,560 [wrapper] Test setup, not cleaning
[2025-11-25 19:28:28] 2025-11-26 00:28:28,563 [wrapper] apfmon messages muted
[2025-11-25 19:28:28] 2025-11-26 00:28:28,565 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:28:28] 2025-11-26 00:28:28,567 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:28:28]  *** Error codes and diagnostics ***
[2025-11-25 19:28:28]     "exeErrorCode": 0,
[2025-11-25 19:28:28]     "exeErrorDiag": "",
[2025-11-25 19:28:28]     "pilotErrorCode": 0,
[2025-11-25 19:28:28]     "pilotErrorDiag": "",
[2025-11-25 19:28:28]  *** Listing of results directory ***
[2025-11-25 19:28:28] total 1306236
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-11-25 19:28:28] -rwx------ 1 boincer umatlas     36292 Nov 24 04:11 runpilot2-wrapper.sh
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 04:11 queuedata.json
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas       100 Nov 25 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:28:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 02:36 run_atlas
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas       105 Nov 25 02:36 job.xml
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas 408158207 Nov 25 02:36 EVNT.47483658._001291.pool.root.1
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:36 start_atlas.sh
[2025-11-25 19:28:28] drwxrwx--x 2 boincer umatlas      4096 Nov 25 02:36 shared
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 02:36 input.tar.gz
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas         0 Nov 25 02:36 boinc_lockfile
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 02:36 pandaJob.out
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas        57 Nov 25 02:36 setup.sh.local
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas    991830 Nov 25 02:36 agis_schedconf.cvmfs.json
[2025-11-25 19:28:28] drwx------ 5 boincer umatlas      4096 Nov 25 02:36 pilot3
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:16 boinc_task_state.xml
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas 904503145 Nov 25 19:27 HITS.47556149._002776.pool.root.1
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas      6038 Nov 25 19:27 init_data.xml
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas      1060 Nov 25 19:27 memory_monitor_summary.json
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas   1516240 Nov 25 19:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas   2192506 Nov 25 19:27 log.47556149._002776.job.log.tgz.1
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas      8646 Nov 25 19:27 heartbeat.json
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:28 boinc_mmap_file
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:28 wrapper_checkpoint.txt
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas        95 Nov 25 19:28 pilot_heartbeat.json
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas       820 Nov 25 19:28 pilotlog.txt
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas   8310833 Nov 25 19:28 log.47556149._002776.job.log.1
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas       353 Nov 25 19:28 output.list
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:28 runtime_log
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas  10526720 Nov 25 19:28 result.tar.gz
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas      9333 Nov 25 19:28 runtime_log.err
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas       665 Nov 25 19:28 NrXNDmImhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpZLKDmPkokSn.diag
[2025-11-25 19:28:28] -rw-r--r-- 1 boincer umatlas     21369 Nov 25 19:28 stderr.txt
[2025-11-25 19:28:28] HITS file was successfully produced:
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas 904503145 Nov 25 19:27 shared/HITS.pool.root.1
[2025-11-25 19:28:28]  *** Contents of shared directory: ***
[2025-11-25 19:28:28] total 1292776
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas 408158207 Nov 25 02:36 ATLAS.root_0
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:36 start_atlas.sh
[2025-11-25 19:28:28] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 02:36 input.tar.gz
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas 904503145 Nov 25 19:27 HITS.pool.root.1
[2025-11-25 19:28:28] -rw------- 1 boincer umatlas  10526720 Nov 25 19:28 result.tar.gz
19:28:30 (13938): run_atlas exited; CPU time 467799.588197
19:28:30 (13938): called boinc_finish(0)

</stderr_txt>
]]>

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