Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-28 02:18:38 (14536): vboxwrapper version 26210
2025-11-28 02:18:38 (14536): BOINC client version: 8.2.4
2025-11-28 02:18:38 (14536): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-28 02:18:39 (14536): Successfully copied 'init_data.xml' to the shared directory.
2025-11-28 02:18:39 (14536): Create VM. (boinc_8ff578151c3d861d, slot#0)
2025-11-28 02:18:39 (14536): Setting Memory Size for VM. (4800MB)
2025-11-28 02:18:40 (14536): Setting CPU Count for VM. (8)
2025-11-28 02:18:40 (14536): Setting Chipset Options for VM.
2025-11-28 02:18:40 (14536): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-28 02:18:40 (14536): Setting Boot Options for VM.
2025-11-28 02:18:41 (14536): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-28 02:18:41 (14536): Enabling VM Network Access.
2025-11-28 02:18:42 (14536): Disabling USB Support for VM.
2025-11-28 02:18:42 (14536): Disabling COM Port Support for VM.
2025-11-28 02:18:42 (14536): Disabling LPT Port Support for VM.
2025-11-28 02:18:42 (14536): Disabling Audio Support for VM.
2025-11-28 02:18:43 (14536): Disabling Clipboard Support for VM.
2025-11-28 02:18:43 (14536): Disabling Drag and Drop Support for VM.
2025-11-28 02:18:43 (14536): Adding storage controller(s) to VM.
2025-11-28 02:18:43 (14536): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-28 02:18:44 (14536): Adding VirtualBox Guest Additions to VM.
2025-11-28 02:18:45 (14536): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-28 02:18:45 (14536): forwarding host port 65278 to guest port 80
2025-11-28 02:18:45 (14536): Enabling remote desktop for VM.
2025-11-28 02:18:46 (14536): Required extension pack not installed, remote desktop not enabled.
2025-11-28 02:18:46 (14536): Enabling shared directory for VM.
2025-11-28 02:18:46 (14536): Starting VM using VBoxManage interface. (boinc_8ff578151c3d861d, slot#0)
2025-11-28 02:18:51 (14536): Successfully started VM. (PID = '18384')
2025-11-28 02:18:51 (14536): Reporting VM Process ID to BOINC.
2025-11-28 02:18:51 (14536): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-28 02:18:51 (14536): Guest Log: CPUID EDX: 0x178bfbff
2025-11-28 02:18:51 (14536): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-28 02:18:51 (14536): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-28 02:18:51 (14536): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-28 02:18:51 (14536): Detected: Web Application Enabled (http://localhost:65278)
2025-11-28 02:18:51 (14536): Preference change detected
2025-11-28 02:18:51 (14536): Setting CPU throttle for VM. (95%)
2025-11-28 02:18:51 (14536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-28 02:18:53 (14536): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-28 02:18:53 (14536): Guest Log: BIOS: Booting from Hard Disk...
2025-11-28 02:18:56 (14536): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-28 02:18:56 (14536): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-28 02:18:56 (14536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-28 02:19:02 (14536): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-28 02:19:02 (14536): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-28 02:19:08 (14536): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000118 main     Log opened 2025-11-28T02:19:07.055572000Z
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000186 main     OS Product: Linux
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000214 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000235 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000255 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000256 main     Process ID: 1370
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.000257 main     Package type: LINUX_64BITS_GENERIC
2025-11-28 02:19:08 (14536): Guest Log: 00:00:00.001555 main     5.2.32 r132073 started. Verbose level = 0
2025-11-28 02:19:08 (14536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-28 02:19:08 (14536): Guest Log: [INFO] Mounting shared directory
2025-11-28 02:19:08 (14536): Guest Log: [INFO] Checking for init_data.xml
2025-11-28 02:19:15 (14536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-28 02:19:15 (14536): Guest Log: [INFO] Detected branch: prod
2025-11-28 02:19:15 (14536): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-28 02:19:15 (14536): Guest Log: Copying input files
2025-11-28 02:19:18 (14536): Guest Log: 00:00:10.007575 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 589 257 193 000ns (GuestNow=1 764 256 757 800 906 000 ns GuestLast=1 764 296 347 058 099 000 ns fSetTimeLastLoop=true )
2025-11-28 02:19:18 (14536): Guest Log: Copied input files into RunAtlas.
2025-11-28 02:19:18 (14536): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-28 02:19:18 (14536): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-28 02:19:18 (14536): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-28 02:19:18 (14536): Guest Log: Further information can be found at the LHC@home message board.
2025-11-28 02:20:21 (14536): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-28 02:20:21 (14536): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-28 02:20:21 (14536): Guest Log: 2.6.3.0 1652 1 32224 153371 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-28 02:20:22 (14536): Guest Log: copied the webapp to /var/www
2025-11-28 02:20:22 (14536): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-28 02:20:22 (14536): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-28 02:20:22 (14536): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-28 02:20:22 (14536): Guest Log:  *** Starting ATLAS job. (PandaID=6895475900 taskID=47556149) ***
2025-11-28 03:58:56 (14536): Status Report: Elapsed Time: '6000.000000'
2025-11-28 03:58:56 (14536): Status Report: CPU Time: '39275.264163'
2025-11-28 05:39:03 (14536): Status Report: Elapsed Time: '12000.000000'
2025-11-28 05:39:03 (14536): Status Report: CPU Time: '85709.929019'
2025-11-28 07:19:09 (14536): Status Report: Elapsed Time: '18000.000000'
2025-11-28 07:19:09 (14536): Status Report: CPU Time: '132131.411791'
2025-11-28 08:59:15 (14536): Status Report: Elapsed Time: '24000.000000'
2025-11-28 08:59:15 (14536): Status Report: CPU Time: '179019.555954'
2025-11-28 10:39:22 (14536): Status Report: Elapsed Time: '30000.000000'
2025-11-28 10:39:22 (14536): Status Report: CPU Time: '225715.132483'
2025-11-28 12:19:29 (14536): Status Report: Elapsed Time: '36000.000000'
2025-11-28 12:19:29 (14536): Status Report: CPU Time: '272334.954926'
2025-11-28 13:19:27 (14536): Guest Log:  *** Job finished ***
2025-11-28 13:19:27 (14536): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:01,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:01,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:17,614 | INFO     | [monitor] cgroup control has ended
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:19,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140540372809536)>', '<ExcThread(monitor, started 140539114551040)>']
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:19,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:19,231 | INFO     | [monitor] control thread has ended
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,274 | INFO     | all workflow threads have been joined
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,275 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,276 | INFO     | traces error code: 0
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,376 [wrapper] ==== pilot stdout END ====
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,380 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,384 [wrapper] pilotpid: 6097
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,387 [wrapper] Pilot exit status: 0
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,401 [wrapper] pandaids: 6895475900
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,429 [wrapper] cleanup supervisor_pilot 12579 6098
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,438 [wrapper] Test setup, not cleaning
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,442 [wrapper] apfmon messages muted
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,447 [wrapper] ==== wrapper stdout END ====
2025-11-28 13:19:27 (14536): Guest Log: 2025-11-28 02:19:24,451 [wrapper] ==== wrapper stderr END ====
2025-11-28 13:19:27 (14536): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 13:19:27 (14536): Guest Log:     "exeErrorCode": 0,
2025-11-28 13:19:27 (14536): Guest Log:     "exeErrorDiag": "",
2025-11-28 13:19:27 (14536): Guest Log:     "pilotErrorCode": 0,
2025-11-28 13:19:27 (14536): Guest Log:     "pilotErrorDiag": "",
2025-11-28 13:19:27 (14536): Guest Log:  *** Listing of results directory ***
2025-11-28 13:19:27 (14536): Guest Log: total 907980
2025-11-28 13:19:27 (14536): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 09:01 pilot3.tar.gz
2025-11-28 13:19:27 (14536): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 09:09 runpilot2-wrapper.sh
2025-11-28 13:19:27 (14536): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 09:09 queuedata.json
2025-11-28 13:19:27 (14536): Guest Log: -rwxr-xr-x. 1 atlas atlas      5835 Nov 27 15:19 init_data.xml
2025-11-28 13:19:27 (14536): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 27 15:19 input.tar.gz
2025-11-28 13:19:27 (14536): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 15:19 start_atlas.sh
2025-11-28 13:19:27 (14536): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 15:19 EVNT.47483658._001291.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 13:19:27 (14536): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 15:20 pandaJob.out
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas    991572 Nov 27 15:21 agis_schedconf.cvmfs.json
2025-11-28 13:19:27 (14536): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 15:21 pilot3
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas 911896817 Nov 28 02:17 HITS.47556149._002772.pool.root.1
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas      1047 Nov 28 02:17 memory_monitor_summary.json
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 02:18 agis_ddmendpoints.agis.ALL.json
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas   1899334 Nov 28 02:18 log.47556149._002772.job.log.tgz.1
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas        96 Nov 28 02:18 pilot_heartbeat.json
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas      8677 Nov 28 02:18 heartbeat.json
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 28 02:19 pilotlog.txt
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas   5114610 Nov 28 02:19 log.47556149._002772.job.log.1
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 02:19 output.list
2025-11-28 13:19:27 (14536): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 02:19 runtime_log
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas   7034880 Nov 28 02:19 result.tar.gz
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas       663 Nov 28 02:19 TAbMDmJkhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmZLKDmp5nhGm.diag
2025-11-28 13:19:27 (14536): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Nov 28 02:19 runtime_log.err
2025-11-28 13:19:27 (14536): Guest Log: Looking for outputfile HITS.47556149._002772.pool.root.1
2025-11-28 13:19:27 (14536): Guest Log: HITS file was successfully produced
2025-11-28 13:19:27 (14536): Guest Log: -rw-------. 1 atlas atlas 911896817 Nov 28 02:17 /home/atlas/RunAtlas/HITS.47556149._002772.pool.root.1
2025-11-28 13:19:29 (14536): Guest Log: Successfully finished the ATLAS job!
2025-11-28 13:19:29 (14536): Guest Log: Copying the results back to the shared directory!
2025-11-28 13:19:29 (14536): Guest Log:  *** Contents of shared directory: ***
2025-11-28 13:19:29 (14536): Guest Log: total 1296596
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root 408158207 Nov 27 15:18 ATLAS.root_0
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root 911896817 Nov 28 02:19 HITS.pool.root.1
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root      5835 Nov 27 15:18 init_data.xml
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 25 07:43 input.tar.gz
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root   7034880 Nov 28 02:19 result.tar.gz
2025-11-28 13:19:29 (14536): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 07:43 start_atlas.sh
2025-11-28 13:19:29 (14536): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 13:19:29 (14536): VM Completion File Detected.
2025-11-28 13:19:29 (14536): Powering off VM.
2025-11-28 13:19:30 (14536): Successfully stopped VM.
2025-11-28 13:19:30 (14536): Deregistering VM. (boinc_8ff578151c3d861d, slot#0)
2025-11-28 13:19:30 (14536): Removing network bandwidth throttle group from VM.
2025-11-28 13:19:31 (14536): Removing VM from VirtualBox.
2025-11-28 13:19:36 (14536): called boinc_finish(0)

</stderr_txt>
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