Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:55:01 (1255201): wrapper (7.7.26015): starting
02:55:01 (1255201): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:55:01] Arguments: --nthreads 8
[2025-11-25 02:55:01] Threads: 8
[2025-11-25 02:55:01] Checking for CVMFS
[2025-11-25 02:55:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:55:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:55:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:55:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:55:03] 2.13.3.0 13172 28338 389712 153275 0 534 29711646 32935937 39779 16776704 0 146981412 99.540 161665802 35271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 02:55:03] CVMFS is ok
[2025-11-25 02:55:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:55:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:55:03] Further information can be found at the LHC@home message board.
[2025-11-25 02:55:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:55:03] Checking for apptainer binary...
[2025-11-25 02:55:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:55:03] Running /usr/bin/apptainer --version
[2025-11-25 02:55:03] apptainer version 1.4.4-1.el9
[2025-11-25 02:55:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:55:04] c6-6-8-3.aglt2.org
[2025-11-25 02:55:04] apptainer works
[2025-11-25 02:55:04] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:55:04] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:55:04] Starting ATLAS job with PandaID=6891567908
[2025-11-25 02:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:01:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:01:09] 2025-11-25 23:00:27,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:01:09] 2025-11-25 23:00:29,213 | INFO     | time since job start (54253s) is within the limit (172800.0s)
[2025-11-25 18:01:09] 2025-11-25 23:00:29,949 | INFO     | monitor loop #2658: job 0:6891567908 is in state 'finished'
[2025-11-25 18:01:09] 2025-11-25 23:00:29,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:01:09] 2025-11-25 23:00:31,220 | INFO     | time since job start (54255s) is within the limit (172800.0s)
[2025-11-25 18:01:09] 2025-11-25 23:00:32,460 | INFO     | monitor loop #2659: job 0:6891567908 is in state 'finished'
[2025-11-25 18:01:09] 2025-11-25 23:00:32,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:01:09] 2025-11-25 23:00:32,586 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 18:01:09] 2025-11-25 23:00:32,655 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2698.5421562499996
[2025-11-25 18:01:09] 2025-11-25 23:00:32,744 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891567908/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:01:09] 2025-11-25 23:00:32,745 | INFO     | extracted standard info from prmon json
[2025-11-25 18:01:09] 2025-11-25 23:00:32,745 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:01:09] 2025-11-25 23:00:32,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:01:09] 2025-11-25 23:00:32,857 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:01:09] 2025-11-25 23:00:32,859 | INFO     | sum of square deviations: 216380287751.22662
[2025-11-25 18:01:09] 2025-11-25 23:00:32,900 | INFO     | sum of deviations: 1626765829496.4937
[2025-11-25 18:01:09] 2025-11-25 23:00:32,908 | INFO     | mean x: 1764084543.3720405
[2025-11-25 18:01:09] 2025-11-25 23:00:32,909 | INFO     | mean y: 2822248.9954904174
[2025-11-25 18:01:09] 2025-11-25 23:00:32,909 | INFO     | intersect: -13259718832.380314
[2025-11-25 18:01:09] 2025-11-25 23:00:32,910 | INFO     | chi2: 12.300647740139048
[2025-11-25 18:01:09] 2025-11-25 23:00:32,911 | INFO     | sum of square deviations: 212741790699.26077
[2025-11-25 18:01:09] 2025-11-25 23:00:32,967 | INFO     | sum of deviations: 1905983459650.763
[2025-11-25 18:01:09] 2025-11-25 23:00:32,967 | INFO     | mean x: 1764084390.8798187
[2025-11-25 18:01:09] 2025-11-25 23:00:32,967 | INFO     | mean y: 2833948.0260770973
[2025-11-25 18:01:09] 2025-11-25 23:00:32,967 | INFO     | intersect: -15801844857.17451
[2025-11-25 18:01:09] 2025-11-25 23:00:32,969 | INFO     | chi2: 9.359458036123588
[2025-11-25 18:01:09] 2025-11-25 23:00:32,969 | INFO     | current chi2=9.359458036123588 (change=23.910852226243925 %)
[2025-11-25 18:01:09] 2025-11-25 23:00:32,969 | INFO     | right removable region: 881
[2025-11-25 18:01:09] 2025-11-25 23:00:32,970 | INFO     | sum of square deviations: 212741048329.26083
[2025-11-25 18:01:09] 2025-11-25 23:00:33,010 | INFO     | sum of deviations: 1281183604355.3342
[2025-11-25 18:01:09] 2025-11-25 23:00:33,010 | INFO     | mean x: 1764084695.8798187
[2025-11-25 18:01:09] 2025-11-25 23:00:33,010 | INFO     | mean y: 2836728.569160998
[2025-11-25 18:01:09] 2025-11-25 23:00:33,014 | INFO     | intersect: -10620954057.482582
[2025-11-25 18:01:09] 2025-11-25 23:00:33,016 | INFO     | chi2: 8.21236946839381
[2025-11-25 18:01:09] 2025-11-25 23:00:33,016 | INFO     | current chi2=8.21236946839381 (change=33.23628444707436 %)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,017 | INFO     | sum of square deviations: 209142940417.7332
[2025-11-25 18:01:09] 2025-11-25 23:00:33,066 | INFO     | sum of deviations: 1037714206712.6868
[2025-11-25 18:01:09] 2025-11-25 23:00:33,066 | INFO     | mean x: 1764084848.3854048
[2025-11-25 18:01:09] 2025-11-25 23:00:33,066 | INFO     | mean y: 2847042.006841505
[2025-11-25 18:01:09] 2025-11-25 23:00:33,066 | INFO     | intersect: -8750094392.974117
[2025-11-25 18:01:09] 2025-11-25 23:00:33,076 | INFO     | chi2: 6.27222151994447
[2025-11-25 18:01:09] 2025-11-25 23:00:33,076 | INFO     | current chi2=6.27222151994447 (change=23.62470363658392 %)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,076 | INFO     | left removable region: 20
[2025-11-25 18:01:09] 2025-11-25 23:00:33,077 | INFO     | sum of square deviations: 197904477928.28836
[2025-11-25 18:01:09] 2025-11-25 23:00:33,125 | INFO     | sum of deviations: 1248807256080.0188
[2025-11-25 18:01:09] 2025-11-25 23:00:33,125 | INFO     | mean x: 1764084970.3681765
[2025-11-25 18:01:09] 2025-11-25 23:00:33,125 | INFO     | mean y: 2866573.8327526134
[2025-11-25 18:01:09] 2025-11-25 23:00:33,125 | INFO     | intersect: -11128777006.944395
[2025-11-25 18:01:09] 2025-11-25 23:00:33,127 | INFO     | chi2: 2.645496550027726
[2025-11-25 18:01:09] 2025-11-25 23:00:33,127 | INFO     | current memory leak: 6.31 B/s (using 861 data points, chi2=2.65)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,136 | INFO     | could have reported an average CPU frequency of 2653 MHz (33 samples)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,136 | INFO     | ..............................
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . Timing measurements:
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . get job = 0 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . initial setup = 6 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . payload setup = 46 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . stage-in = 0 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . payload execution = 54116 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . stage-out = 7 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | . log creation = 1 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,137 | INFO     | ..............................
[2025-11-25 18:01:09] 2025-11-25 23:00:33,247 | INFO     | time since job start (54257s) is within the limit (172800.0s)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | 
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | job summary report
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | --------------------------------------------------
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | PanDA job id: 6891567908
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | task id: 47493068
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | errors: (none)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | pilot state: finished 
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | transexitcode: 0
[2025-11-25 18:01:09] 2025-11-25 23:00:33,418 | INFO     | exeerrorcode: 0
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | exeerrordiag: 
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | exitcode: 0
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | exitmsg: OK
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | cpuconsumptiontime: 258978 s
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | nevents: 1000
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | neventsw: 0
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | pid: 1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | pgrp: 1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | corecount: 8
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | event service: False
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | sizes: {0: 2283465, 1: 2284150, 2: 2284349, 13: 2284349, 25: 2284405, 35: 2284695, 36: 2284851, 54164: 2332216, 54165: 2332215, 54172: 2341270, 54175: 2341326, 541
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | --------------------------------------------------
[2025-11-25 18:01:09] 2025-11-25 23:00:33,419 | INFO     | 
[2025-11-25 18:01:09] 2025-11-25 23:00:33,420 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 18:01:09] 2025-11-25 23:00:33,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,479 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,479 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,481 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:01:09] 2025-11-25 23:00:33,484 | INFO     | job 6891567908 has completed (purged errors)
[2025-11-25 18:01:09] 2025-11-25 23:00:33,484 | INFO     | overall cleanup function is called
[2025-11-25 18:01:09] 2025-11-25 23:00:34,612 | INFO     | --- collectZombieJob: --- 10, [1276322]
[2025-11-25 18:01:09] 2025-11-25 23:00:34,612 | INFO     | zombie collector waiting for pid 1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:34,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:01:09] 2025-11-25 23:00:34,613 | INFO     | collected zombie processes
[2025-11-25 18:01:09] 2025-11-25 23:00:34,613 | INFO     | will attempt to kill all subprocesses of pid=1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:36,335 | INFO     | process IDs to be killed: [1276322] (in reverse order)
[2025-11-25 18:01:09] 2025-11-25 23:00:36,606 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:01:09] 2025-11-25 23:00:36,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:01:09] 2025-11-25 23:00:36,691 | INFO     | did not find any defunct processes belonging to 1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:36,776 | INFO     | did not find any defunct processes belonging to 1276322
[2025-11-25 18:01:09] 2025-11-25 23:00:36,784 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:01:09] 2025-11-25 23:00:36,785 | INFO     | ready for new job
[2025-11-25 18:01:09] 2025-11-25 23:00:36,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:01:09] 2025-11-25 23:00:36,801 | INFO     | ***************************************
[2025-11-25 18:01:09] 2025-11-25 23:00:36,802 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:01:09] 2025-11-25 23:00:36,802 | INFO     | ***************************************
[2025-11-25 18:01:09] 2025-11-25 23:00:36,802 | INFO     | 
[2025-11-25 18:01:09] 2025-11-25 23:00:36,815 | INFO     | architecture information:
[2025-11-25 18:01:09] 2025-11-25 23:00:36,820 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:01:09] 2025-11-25 23:00:36,867 | INFO     | cat /etc/os-release:
[2025-11-25 18:01:09] NAME="CentOS Linux"
[2025-11-25 18:01:09] VERSION="7 (Core)"
[2025-11-25 18:01:09] ID="centos"
[2025-11-25 18:01:09] ID_LIKE="rhel fedora"
[2025-11-25 18:01:09] VERSION_ID="7"
[2025-11-25 18:01:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:01:09] ANSI_COLOR="0;31"
[2025-11-25 18:01:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:01:09] HOME_URL="https://www.centos.org/"
[2025-11-25 18:01:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:01:09] 
[2025-11-25 18:01:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:01:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:01:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:01:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:01:09] 
[2025-11-25 18:01:09] 2025-11-25 23:00:36,867 | INFO     | ***************************************
[2025-11-25 18:01:09] 2025-11-25 23:00:37,370 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 18:01:09] 2025-11-25 23:00:37,421 | INFO     | sufficient remaining disk space (86023077888 B)
[2025-11-25 18:01:09] 2025-11-25 23:00:37,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:01:09] 2025-11-25 23:00:37,422 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:01:09] 2025-11-25 23:00:37,423 | INFO     | update_server=False
[2025-11-25 18:01:09] 2025-11-25 23:00:37,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:01:09] 2025-11-25 23:00:37,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:01:09] 2025-11-25 23:00:37,483 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 18:01:09] 2025-11-25 23:00:37,484 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 18:01:09] 2025-11-25 23:00:37,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:01:09] 2025-11-25 23:00:37,484 | INFO     | will abort loop
[2025-11-25 18:01:09] 2025-11-25 23:00:38,257 | INFO     | all data control threads have been joined
[2025-11-25 18:01:09] 2025-11-25 23:00:38,429 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:38,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:01:09] 2025-11-25 23:00:38,490 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:38,520 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:38,521 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:38,744 | INFO     | all job control threads have been joined
[2025-11-25 18:01:09] 2025-11-25 23:00:38,830 | INFO     | all payload control threads have been joined
[2025-11-25 18:01:09] 2025-11-25 23:00:39,264 | INFO     | [data] control thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,271 | INFO     | [job] validate thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,272 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,432 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,476 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,477 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,490 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,492 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,680 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,750 | INFO     | [job] control thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:39,835 | INFO     | [payload] control thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:40,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:01:09] 2025-11-25 23:00:44,356 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:01:09] 2025-11-25 23:00:57,976 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:01:09] 2025-11-25 23:00:59,367 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139938402223936)>', '<ExcThread(monitor, started 139937684911872)>']
[2025-11-25 18:01:09] 2025-11-25 23:01:04,400 | INFO     | all workflow threads have been joined
[2025-11-25 18:01:09] 2025-11-25 23:01:04,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:01:09] 2025-11-25 23:01:04,401 | INFO     | traces error code: 0
[2025-11-25 18:01:09] 2025-11-25 23:01:04,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:01:09] 2025-11-25 23:01:08,271 | INFO     | PID=1261326 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | INFO     | .. there are 53 such processes running
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:01:09] 2025-11-25 23:01:08,272 | INFO     | [monitor] control thread has ended
[2025-11-25 18:01:09] 2025-11-25 23:01:08,653 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:01:09] 2025-11-25 23:01:08,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:01:09] 2025-11-25 23:01:08,697 [wrapper] pilotpid: 1261326
[2025-11-25 18:01:09] 2025-11-25 23:01:08,721 [wrapper] Pilot exit status: 0
[2025-11-25 18:01:09] 2025-11-25 23:01:08,829 [wrapper] pandaids: 6891567908
[2025-11-25 18:01:09] 2025-11-25 23:01:09,128 [wrapper] cleanup supervisor_pilot  565182 1261327
[2025-11-25 18:01:09] 2025-11-25 23:01:09,136 [wrapper] Test setup, not cleaning
[2025-11-25 18:01:09] 2025-11-25 23:01:09,139 [wrapper] apfmon messages muted
[2025-11-25 18:01:09] 2025-11-25 23:01:09,142 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:01:09] 2025-11-25 23:01:09,144 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:01:09]  *** Error codes and diagnostics ***
[2025-11-25 18:01:09]     "exeErrorCode": 0,
[2025-11-25 18:01:09]     "exeErrorDiag": "",
[2025-11-25 18:01:09]     "pilotErrorCode": 0,
[2025-11-25 18:01:09]     "pilotErrorDiag": "",
[2025-11-25 18:01:09]  *** Listing of results directory ***
[2025-11-25 18:01:09] total 1320212
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:29 queuedata.json
[2025-11-25 18:01:09] -rwx------. 1 boincer umatlas     36292 Nov 18 10:30 runpilot2-wrapper.sh
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas       100 Nov 25 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:01:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 02:54 run_atlas
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas       105 Nov 25 02:54 job.xml
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas 409779671 Nov 25 02:55 EVNT.47493065._000178.pool.root.1
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 02:55 start_atlas.sh
[2025-11-25 18:01:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 02:55 shared
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 02:55 input.tar.gz
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas         0 Nov 25 02:55 boinc_lockfile
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas      2770 Nov 25 02:55 pandaJob.out
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas    991830 Nov 25 02:56 agis_schedconf.cvmfs.json
[2025-11-25 18:01:09] drwx------. 5 boincer umatlas      4096 Nov 25 02:56 pilot3
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas       533 Nov 25 17:47 boinc_task_state.xml
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas 922069555 Nov 25 17:58 HITS.47493068._001771.pool.root.1
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas      6879 Nov 25 17:58 init_data.xml
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas      1058 Nov 25 18:00 memory_monitor_summary.json
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas   1516240 Nov 25 18:00 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas   2015438 Nov 25 18:00 log.47493068._001771.job.log.tgz.1
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas        95 Nov 25 18:00 pilot_heartbeat.json
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas      7948 Nov 25 18:00 heartbeat.json
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas       823 Nov 25 18:01 pilotlog.txt
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas   6050697 Nov 25 18:01 log.47493068._001771.job.log.1
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas       353 Nov 25 18:01 output.list
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas        29 Nov 25 18:01 wrapper_checkpoint.txt
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas       620 Nov 25 18:01 runtime_log
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas   8089600 Nov 25 18:01 result.tar.gz
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 18:01 boinc_mmap_file
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas      8704 Nov 25 18:01 runtime_log.err
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas       660 Nov 25 18:01 HrMODmXqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwGFKDm1EGd3m.diag
[2025-11-25 18:01:09] -rw-r--r--. 1 boincer umatlas     21591 Nov 25 18:01 stderr.txt
[2025-11-25 18:01:09] HITS file was successfully produced:
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas 922069555 Nov 25 17:58 shared/HITS.pool.root.1
[2025-11-25 18:01:09]  *** Contents of shared directory: ***
[2025-11-25 18:01:09] total 1309140
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas 409779671 Nov 25 02:55 ATLAS.root_0
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 02:55 start_atlas.sh
[2025-11-25 18:01:09] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 02:55 input.tar.gz
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas 922069555 Nov 25 17:58 HITS.pool.root.1
[2025-11-25 18:01:09] -rw-------. 1 boincer umatlas   8089600 Nov 25 18:01 result.tar.gz
18:01:11 (1255201): run_atlas exited; CPU time 261147.088445
18:01:11 (1255201): called boinc_finish(0)

</stderr_txt>
]]>

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