Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:31:14 (2599873): wrapper (7.7.26015): starting
02:31:14 (2599873): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:31:14] Arguments: --nthreads 8
[2025-11-25 02:31:14] Threads: 8
[2025-11-25 02:31:14] Checking for CVMFS
[2025-11-25 02:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:31:17] 2.13.2.0 9630 32104 203836 153275 3 560 27144864 39288833 10058 16776704 0 21789670 99.588 20643196 31544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 02:31:17] CVMFS is ok
[2025-11-25 02:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:31:17] Further information can be found at the LHC@home message board.
[2025-11-25 02:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:31:17] Checking for apptainer binary...
[2025-11-25 02:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:31:17] Running /usr/bin/apptainer --version
[2025-11-25 02:31:17] apptainer version 1.4.4-1.el9
[2025-11-25 02:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:31:18] c-211-17.aglt2.org
[2025-11-25 02:31:18] apptainer works
[2025-11-25 02:31:19] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:31:19] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:31:19] Starting ATLAS job with PandaID=6896242869
[2025-11-25 02:31:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:28:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:28:45] 2025-11-27 07:27:55,865 | INFO     | monitor loop #9107: job 0:6896242869 is in state 'finished'
[2025-11-27 02:28:45] 2025-11-27 07:27:55,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:45] 2025-11-27 07:27:56,130 | INFO     | time since job start (172504s) is within the limit (172800.0s)
[2025-11-27 02:28:45] 2025-11-27 07:27:58,137 | INFO     | time since job start (172506s) is within the limit (172800.0s)
[2025-11-27 02:28:45] 2025-11-27 07:27:58,369 | INFO     | monitor loop #9108: job 0:6896242869 is in state 'finished'
[2025-11-27 02:28:45] 2025-11-27 07:27:58,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:45] 2025-11-27 07:28:00,144 | INFO     | time since job start (172508s) is within the limit (172800.0s)
[2025-11-27 02:28:45] 2025-11-27 07:28:00,874 | INFO     | monitor loop #9109: job 0:6896242869 is in state 'finished'
[2025-11-27 02:28:45] 2025-11-27 07:28:00,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:45] 2025-11-27 07:28:02,150 | INFO     | time since job start (172510s) is within the limit (172800.0s)
[2025-11-27 02:28:45] 2025-11-27 07:28:03,381 | INFO     | monitor loop #9110: job 0:6896242869 is in state 'finished'
[2025-11-27 02:28:45] 2025-11-27 07:28:03,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:45] 2025-11-27 07:28:04,160 | INFO     | time since job start (172512s) is within the limit (172800.0s)
[2025-11-27 02:28:45] 2025-11-27 07:28:04,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:28:45] 2025-11-27 07:28:04,358 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.875925
[2025-11-27 02:28:45] 2025-11-27 07:28:04,366 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896242869/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:28:45] 2025-11-27 07:28:04,367 | INFO     | extracted standard info from prmon json
[2025-11-27 02:28:45] 2025-11-27 07:28:04,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:28:45] 2025-11-27 07:28:04,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:28:45] 2025-11-27 07:28:04,456 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:28:45] 2025-11-27 07:28:04,459 | INFO     | sum of square deviations: 6990105824454.925
[2025-11-27 02:28:45] 2025-11-27 07:28:04,690 | INFO     | sum of deviations: 23269259961893.145
[2025-11-27 02:28:45] 2025-11-27 07:28:04,691 | INFO     | mean x: 1764142287.1065488
[2025-11-27 02:28:45] 2025-11-27 07:28:04,691 | INFO     | mean y: 2927854.122477876
[2025-11-27 02:28:45] 2025-11-27 07:28:04,691 | INFO     | intersect: -5869699330.552805
[2025-11-27 02:28:45] 2025-11-27 07:28:04,695 | INFO     | chi2: 35.327024319678785
[2025-11-27 02:28:45] 2025-11-27 07:28:04,700 | INFO     | sum of square deviations: 6953062034690.79
[2025-11-27 02:28:45] 2025-11-27 07:28:04,930 | INFO     | sum of deviations: 24196900245658.277
[2025-11-27 02:28:45] 2025-11-27 07:28:04,931 | INFO     | mean x: 1764142134.628014
[2025-11-27 02:28:45] 2025-11-27 07:28:04,931 | INFO     | mean y: 2931672.7113475176
[2025-11-27 02:28:45] 2025-11-27 07:28:04,931 | INFO     | intersect: -6136344956.460139
[2025-11-27 02:28:45] 2025-11-27 07:28:04,939 | INFO     | chi2: 32.43069423695192
[2025-11-27 02:28:45] 2025-11-27 07:28:04,944 | INFO     | current chi2=32.43069423695192 (change=8.19862453321174 %)
[2025-11-27 02:28:45] 2025-11-27 07:28:04,944 | INFO     | right removable region: 2819
[2025-11-27 02:28:45] 2025-11-27 07:28:04,951 | INFO     | sum of square deviations: 6953041172080.789
[2025-11-27 02:28:45] 2025-11-27 07:28:05,498 | INFO     | sum of deviations: 22128421850009.996
[2025-11-27 02:28:45] 2025-11-27 07:28:05,498 | INFO     | mean x: 1764142439.628014
[2025-11-27 02:28:45] 2025-11-27 07:28:05,498 | INFO     | mean y: 2932548.385106383
[2025-11-27 02:28:45] 2025-11-27 07:28:05,499 | INFO     | intersect: -5611544216.738369
[2025-11-27 02:28:45] 2025-11-27 07:28:05,503 | INFO     | chi2: 31.13438966821396
[2025-11-27 02:28:45] 2025-11-27 07:28:05,504 | INFO     | current chi2=31.13438966821396 (change=11.868066252977142 %)
[2025-11-27 02:28:45] 2025-11-27 07:28:05,504 | INFO     | left removable region: 10
[2025-11-27 02:28:45] 2025-11-27 07:28:05,512 | INFO     | sum of square deviations: 6871985346212.471
[2025-11-27 02:28:45] 2025-11-27 07:28:05,973 | INFO     | monitor loop #9111: job 0:6896242869 is in state 'finished'
[2025-11-27 02:28:45] 2025-11-27 07:28:05,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,007 | INFO     | sum of deviations: 22256784506683.246
[2025-11-27 02:28:45] 2025-11-27 07:28:06,007 | INFO     | mean x: 1764142409.1755073
[2025-11-27 02:28:45] 2025-11-27 07:28:06,008 | INFO     | mean y: 2941374.011747953
[2025-11-27 02:28:45] 2025-11-27 07:28:06,008 | INFO     | intersect: -5710711298.685075
[2025-11-27 02:28:45] 2025-11-27 07:28:06,017 | INFO     | chi2: 24.431660150850448
[2025-11-27 02:28:45] 2025-11-27 07:28:06,017 | INFO     | current memory leak: 3.24 B/s (using 2809 data points, chi2=24.43)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | could have reported an average CPU frequency of 2599 MHz (96 samples)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | ..............................
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | . Timing measurements:
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | . get job = 1 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | . initial setup = 5 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,024 | INFO     | . payload setup = 51 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,025 | INFO     | . stage-in = 0 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,025 | INFO     | . payload execution = 172348 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,025 | INFO     | . stage-out = 6 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,025 | INFO     | . log creation = 1 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,025 | INFO     | ..............................
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | job summary report
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | --------------------------------------------------
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | PanDA job id: 6896242869
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | task id: 47556173
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | errors: (none)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,270 | INFO     | pilot state: finished 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | transexitcode: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | exeerrorcode: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | exeerrordiag: 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | exitcode: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | exitmsg: OK
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | cpuconsumptiontime: 312389 s
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | nevents: 1000
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | neventsw: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | pid: 2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:06,271 | INFO     | pgrp: 2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | corecount: 8
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | event service: False
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | sizes: {0: 2283479, 1: 2284080, 2: 2284192, 3: 2284220, 4: 2284220, 5: 2284391, 16: 2284575, 28: 2284603, 39: 2284631, 40: 2284921, 50: 2284949, 172401: 2388239, 1
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | --------------------------------------------------
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,272 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 02:28:45] 2025-11-27 07:28:06,360 | INFO     | PID=2604881 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 02:28:45] 2025-11-27 07:28:06,361 | INFO     | .. there are 8 such processes running
[2025-11-27 02:28:45] 2025-11-27 07:28:06,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,390 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,390 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:28:45] 2025-11-27 07:28:06,392 | INFO     | job 6896242869 has completed (purged errors)
[2025-11-27 02:28:45] 2025-11-27 07:28:06,392 | INFO     | overall cleanup function is called
[2025-11-27 02:28:45] 2025-11-27 07:28:07,476 | INFO     | --- collectZombieJob: --- 10, [2612164]
[2025-11-27 02:28:45] 2025-11-27 07:28:07,477 | INFO     | zombie collector waiting for pid 2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:07,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:28:45] 2025-11-27 07:28:07,477 | INFO     | collected zombie processes
[2025-11-27 02:28:45] 2025-11-27 07:28:07,477 | INFO     | will attempt to kill all subprocesses of pid=2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:07,899 | INFO     | process IDs to be killed: [2612164] (in reverse order)
[2025-11-27 02:28:45] 2025-11-27 07:28:08,082 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:28:45] 2025-11-27 07:28:08,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:28:45] 2025-11-27 07:28:08,104 | INFO     | did not find any defunct processes belonging to 2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:08,121 | INFO     | did not find any defunct processes belonging to 2612164
[2025-11-27 02:28:45] 2025-11-27 07:28:08,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:28:45] 2025-11-27 07:28:08,127 | INFO     | ready for new job
[2025-11-27 02:28:45] 2025-11-27 07:28:08,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:28:45] 2025-11-27 07:28:08,145 | INFO     | ***************************************
[2025-11-27 02:28:45] 2025-11-27 07:28:08,146 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:28:45] 2025-11-27 07:28:08,146 | INFO     | ***************************************
[2025-11-27 02:28:45] 2025-11-27 07:28:08,146 | INFO     | 
[2025-11-27 02:28:45] 2025-11-27 07:28:08,152 | INFO     | architecture information:
[2025-11-27 02:28:45] 2025-11-27 07:28:08,175 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:28:45] 2025-11-27 07:28:08,224 | INFO     | cat /etc/os-release:
[2025-11-27 02:28:45] NAME="CentOS Linux"
[2025-11-27 02:28:45] VERSION="7 (Core)"
[2025-11-27 02:28:45] ID="centos"
[2025-11-27 02:28:45] ID_LIKE="rhel fedora"
[2025-11-27 02:28:45] VERSION_ID="7"
[2025-11-27 02:28:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:28:45] ANSI_COLOR="0;31"
[2025-11-27 02:28:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:28:45] HOME_URL="https://www.centos.org/"
[2025-11-27 02:28:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:28:45] 
[2025-11-27 02:28:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:28:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:28:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:28:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:28:45] 
[2025-11-27 02:28:45] 2025-11-27 07:28:08,224 | INFO     | ***************************************
[2025-11-27 02:28:45] 2025-11-27 07:28:08,727 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 02:28:45] 2025-11-27 07:28:08,870 | INFO     | sufficient remaining disk space (49869225984 B)
[2025-11-27 02:28:45] 2025-11-27 07:28:08,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:28:45] 2025-11-27 07:28:08,871 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:28:45] 2025-11-27 07:28:08,871 | INFO     | update_server=False
[2025-11-27 02:28:45] 2025-11-27 07:28:08,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:28:45] 2025-11-27 07:28:08,962 | INFO     | all data control threads have been joined
[2025-11-27 02:28:45] 2025-11-27 07:28:09,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:28:45] 2025-11-27 07:28:09,518 | INFO     | aborting loop
[2025-11-27 02:28:45] 2025-11-27 07:28:09,594 | INFO     | all payload control threads have been joined
[2025-11-27 02:28:45] 2025-11-27 07:28:09,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:28:45] 2025-11-27 07:28:09,877 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:09,968 | INFO     | [data] control thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,058 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,444 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,445 | INFO     | [job] validate thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,446 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,523 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,600 | INFO     | [payload] control thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,725 | INFO     | all job control threads have been joined
[2025-11-27 02:28:45] 2025-11-27 07:28:10,883 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:10,971 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:11,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:28:45] 2025-11-27 07:28:11,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:11,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:28:45] 2025-11-27 07:28:11,671 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:11,731 | INFO     | [job] control thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:12,297 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:15,076 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:28:45] 2025-11-27 07:28:37,937 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:28:45] 2025-11-27 07:28:38,673 | INFO     | PID=2604881 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:28:45] 2025-11-27 07:28:38,673 | INFO     | .. there are 8 such processes running
[2025-11-27 02:28:45] 2025-11-27 07:28:38,673 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:28:45] 2025-11-27 07:28:38,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:28:45] 2025-11-27 07:28:38,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:28:45] 2025-11-27 07:28:38,941 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702133000000)>', '<ExcThread(monitor, started 140701618648832)>']
[2025-11-27 02:28:45] 2025-11-27 07:28:39,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:28:45] 2025-11-27 07:28:39,679 | INFO     | [monitor] control thread has ended
[2025-11-27 02:28:45] 2025-11-27 07:28:43,967 | INFO     | all workflow threads have been joined
[2025-11-27 02:28:45] 2025-11-27 07:28:43,967 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:28:45] 2025-11-27 07:28:43,968 | INFO     | traces error code: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:43,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:28:45] 2025-11-27 07:28:44,291 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:28:45] 2025-11-27 07:28:44,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:28:45] 2025-11-27 07:28:44,330 [wrapper] pilotpid: 2604881
[2025-11-27 02:28:45] 2025-11-27 07:28:44,345 [wrapper] Pilot exit status: 0
[2025-11-27 02:28:45] 2025-11-27 07:28:44,417 [wrapper] pandaids: 6896242869
[2025-11-27 02:28:45] 2025-11-27 07:28:44,721 [wrapper] cleanup supervisor_pilot 2419863 2604882
[2025-11-27 02:28:45] 2025-11-27 07:28:44,735 [wrapper] Test setup, not cleaning
[2025-11-27 02:28:45] 2025-11-27 07:28:44,745 [wrapper] apfmon messages muted
[2025-11-27 02:28:45] 2025-11-27 07:28:44,751 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:28:45] 2025-11-27 07:28:44,756 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:28:45]  *** Error codes and diagnostics ***
[2025-11-27 02:28:45]     "exeErrorCode": 0,
[2025-11-27 02:28:45]     "exeErrorDiag": "",
[2025-11-27 02:28:45]     "pilotErrorCode": 0,
[2025-11-27 02:28:45]     "pilotErrorDiag": "",
[2025-11-27 02:28:45]  *** Listing of results directory ***
[2025-11-27 02:28:45] total 1356532
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 15:16 queuedata.json
[2025-11-27 02:28:45] -rwx------. 1 boincer umatlas     36292 Nov 24 15:19 runpilot2-wrapper.sh
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:28:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 02:31 run_atlas
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 02:31 job.xml
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas 409643833 Nov 25 02:31 EVNT.47483658._003052.pool.root.1
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:31 start_atlas.sh
[2025-11-27 02:28:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 02:31 shared
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 02:31 input.tar.gz
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 02:31 boinc_lockfile
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 02:31 pandaJob.out
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas        57 Nov 25 02:31 setup.sh.local
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas    991830 Nov 25 02:32 agis_schedconf.cvmfs.json
[2025-11-27 02:28:45] drwx------. 5 boincer umatlas      4096 Nov 25 02:32 pilot3
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:56 boinc_task_state.xml
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas 928947453 Nov 27 02:26 HITS.47556173._000348.pool.root.1
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas      1072 Nov 27 02:27 memory_monitor_summary.json
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas   3307781 Nov 27 02:27 log.47556173._000348.job.log.tgz.1
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas        95 Nov 27 02:27 pilot_heartbeat.json
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas      8656 Nov 27 02:28 heartbeat.json
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 02:28 init_data.xml
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:28 boinc_mmap_file
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:28 wrapper_checkpoint.txt
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas      4823 Nov 27 02:28 pilotlog.txt
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas  19981779 Nov 27 02:28 log.47556173._000348.job.log.1
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas       353 Nov 27 02:28 output.list
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:28 runtime_log
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas  23306240 Nov 27 02:28 result.tar.gz
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 02:28 runtime_log.err
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas       668 Nov 27 02:28 I5CODmTDsh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmduLKDmUgvKln.diag
[2025-11-27 02:28:45] -rw-r--r--. 1 boincer umatlas     21887 Nov 27 02:28 stderr.txt
[2025-11-27 02:28:45] HITS file was successfully produced:
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas 928947453 Nov 27 02:26 shared/HITS.pool.root.1
[2025-11-27 02:28:45]  *** Contents of shared directory: ***
[2025-11-27 02:28:45] total 1330584
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas 409643833 Nov 25 02:31 ATLAS.root_0
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:31 start_atlas.sh
[2025-11-27 02:28:45] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 02:31 input.tar.gz
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas 928947453 Nov 27 02:26 HITS.pool.root.1
[2025-11-27 02:28:45] -rw-------. 1 boincer umatlas  23306240 Nov 27 02:28 result.tar.gz
02:28:46 (2599873): run_atlas exited; CPU time 314998.772656
02:28:46 (2599873): called boinc_finish(0)

</stderr_txt>
]]>

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