Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:14:52 (2716839): wrapper (7.7.26015): starting
23:14:52 (2716839): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 23:14:52] Arguments: --nthreads 12
[2025-11-24 23:14:52] Threads: 12
[2025-11-24 23:14:52] Checking for CVMFS
[2025-11-24 23:14:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:14:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:14:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:14:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:14:52] 2.11.5.0 3259785 26316 200608 153274 0 139 44267002 45568000 10145 130560 0 260489271 99.791 154855671 13631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 23:14:52] CVMFS is ok
[2025-11-24 23:14:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:14:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:14:52] Further information can be found at the LHC@home message board.
[2025-11-24 23:14:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:14:52] Checking for apptainer binary...
[2025-11-24 23:14:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:14:52] Running /usr/bin/apptainer --version
[2025-11-24 23:14:52] apptainer version 1.4.1-1.el9
[2025-11-24 23:14:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:14:53] wns0092.triumf.lcg
[2025-11-24 23:14:53] apptainer works
[2025-11-24 23:14:53] Set ATHENA_PROC_NUMBER=12
[2025-11-24 23:14:53] Set ATHENA_CORE_NUMBER=12
[2025-11-24 23:14:53] Starting ATLAS job with PandaID=6894238253
[2025-11-24 23:14:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:18:13]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | found no stored workdir sizes
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | WARNING  | wrong length of table data, x=[1764054925.0], y=[1040.0] (must be same and length>=4)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | could have reported an average CPU frequency of 2571 MHz (4 samples)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . Timing measurements:
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . get job = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . initial setup = 2 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload setup = 4 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-in = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload execution = 16 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-out = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . log creation = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238253/pilotlog.txt
[2025-11-24 23:18:13] 2025-11-25 07:17:40,237 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 23:18:13] - Log from pilotlog.txt -
[2025-11-24 23:18:13] 2025-11-25 07:17:40,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:18:13] 2025-11-25 07:17:40,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | found no stored workdir sizes
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | WARNING  | wrong length of table data, x=[1764054925.0], y=[1040.0] (must be same and length>=4)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | could have reported an average CPU frequency of 2571 MHz (4 samples)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . Timing measurements:
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . get job = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . initial setup = 2 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload setup = 4 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-in = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload execution = 16 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-out = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . log creation = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238253/pilotlog.txt
[2025-11-24 23:18:13] 2025-11-25 07:17:40,238 | WARNING  | 
[2025-11-24 23:18:13] [begin log extracts]
[2025-11-24 23:18:13] - Log from pilotlog.txt -
[2025-11-24 23:18:13] 2025-11-25 07:17:40,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:18:13] 2025-11-25 07:17:40,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 23:18:13] 2025-11-25 07:17:40,224 | WARNING  | found no stored workdir sizes
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | WARNING  | wrong length of table data, x=[1764054925.0], y=[1040.0] (must be same and length>=4)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,225 | INFO     | could have reported an average CPU frequency of 2571 MHz (4 samples)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . Timing measurements:
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . get job = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . initial setup = 2 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload setup = 4 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-in = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . payload execution = 16 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . stage-out = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | . log creation = 0 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | ..............................
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 23:18:13] 2025-11-25 07:17:40,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238253/pilotlog.txt
[2025-11-24 23:18:13] [end log extracts]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,238 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,239 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | 
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | job summary report
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | --------------------------------------------------
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | PanDA job id: 6894238253
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | task id: 47523675
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 23:15:32,775 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | pilot state: failed 
[2025-11-24 23:18:13] 2025-11-25 07:17:40,297 | INFO     | transexitcode: 65
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | exeerrorcode: 65
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | exitcode: 65
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | cpuconsumptiontime: 17 s
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | nevents: 0
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | neventsw: 0
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | pid: 2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | pgrp: 2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | corecount: 12
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | event service: False
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | sizes: {0: 2283942, 4: 2284204, 11: 2284232, 24: 2307412, 25: 2311732, 144: 2311870}
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | --------------------------------------------------
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | 
[2025-11-24 23:18:13] 2025-11-25 07:17:40,298 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 23:18:13] 2025-11-25 07:17:40,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:18:13] 2025-11-25 07:17:40,314 | INFO     | job 6894238253 has completed (purged errors)
[2025-11-24 23:18:13] 2025-11-25 07:17:40,314 | INFO     | overall cleanup function is called
[2025-11-24 23:18:13] 2025-11-25 07:17:41,320 | INFO     | --- collectZombieJob: --- 10, [2727008]
[2025-11-24 23:18:13] 2025-11-25 07:17:41,320 | INFO     | zombie collector waiting for pid 2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:41,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:18:13] 2025-11-25 07:17:41,320 | INFO     | collected zombie processes
[2025-11-24 23:18:13] 2025-11-25 07:17:41,320 | INFO     | will attempt to kill all subprocesses of pid=2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:41,453 | INFO     | process IDs to be killed: [2727008] (in reverse order)
[2025-11-24 23:18:13] 2025-11-25 07:17:41,510 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:18:13] 2025-11-25 07:17:41,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:18:13] 2025-11-25 07:17:41,516 | INFO     | did not find any defunct processes belonging to 2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:41,523 | INFO     | did not find any defunct processes belonging to 2727008
[2025-11-24 23:18:13] 2025-11-25 07:17:41,524 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:18:13] 2025-11-25 07:17:41,524 | INFO     | ready for new job
[2025-11-24 23:18:13] 2025-11-25 07:17:41,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:18:13] 2025-11-25 07:17:41,526 | INFO     | ***************************************
[2025-11-24 23:18:13] 2025-11-25 07:17:41,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:18:13] 2025-11-25 07:17:41,526 | INFO     | ***************************************
[2025-11-24 23:18:13] 2025-11-25 07:17:41,526 | INFO     | 
[2025-11-24 23:18:13] 2025-11-25 07:17:41,528 | INFO     | architecture information:
[2025-11-24 23:18:13] 2025-11-25 07:17:41,529 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:18:13] 2025-11-25 07:17:41,541 | INFO     | cat /etc/os-release:
[2025-11-24 23:18:13] NAME="CentOS Linux"
[2025-11-24 23:18:13] VERSION="7 (Core)"
[2025-11-24 23:18:13] ID="centos"
[2025-11-24 23:18:13] ID_LIKE="rhel fedora"
[2025-11-24 23:18:13] VERSION_ID="7"
[2025-11-24 23:18:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:18:13] ANSI_COLOR="0;31"
[2025-11-24 23:18:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:18:13] HOME_URL="https://www.centos.org/"
[2025-11-24 23:18:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:18:13] 
[2025-11-24 23:18:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:18:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:18:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:18:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:18:13] 
[2025-11-24 23:18:13] 2025-11-25 07:17:41,541 | INFO     | ***************************************
[2025-11-24 23:18:13] 2025-11-25 07:17:42,044 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 23:18:13] 2025-11-25 07:17:42,056 | INFO     | sufficient remaining disk space (1841602494464 B)
[2025-11-24 23:18:13] 2025-11-25 07:17:42,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:18:13] 2025-11-25 07:17:42,056 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:18:13] 2025-11-25 07:17:42,056 | INFO     | update_server=False
[2025-11-24 23:18:13] 2025-11-25 07:17:42,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:18:13] 2025-11-25 07:17:42,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:18:13] 2025-11-25 07:17:42,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:18:13] 2025-11-25 07:17:42,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:18:13] 2025-11-25 07:17:42,285 | INFO     | aborting loop
[2025-11-24 23:18:13] 2025-11-25 07:17:42,569 | INFO     | all payload control threads have been joined
[2025-11-24 23:18:13] 2025-11-25 07:17:42,759 | INFO     | all data control threads have been joined
[2025-11-24 23:18:13] 2025-11-25 07:17:43,062 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,062 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,203 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,286 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,574 | INFO     | [payload] control thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,689 | INFO     | all job control threads have been joined
[2025-11-24 23:18:13] 2025-11-25 07:17:43,764 | INFO     | [data] control thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,781 | INFO     | [job] validate thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:43,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:18:13] 2025-11-25 07:17:43,929 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,051 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,062 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,300 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,359 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,517 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:44,694 | INFO     | [job] control thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:17:47,797 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:18:13] 2025-11-25 07:18:01,607 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:18:13] 2025-11-25 07:18:03,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606317672256)>', '<ExcThread(monitor, started 140605904623360)>']
[2025-11-24 23:18:13] 2025-11-25 07:18:08,513 | INFO     | all workflow threads have been joined
[2025-11-24 23:18:13] 2025-11-25 07:18:08,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:18:13] 2025-11-25 07:18:08,513 | INFO     | traces error code: 0
[2025-11-24 23:18:13] 2025-11-25 07:18:08,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:18:13] 2025-11-25 07:18:13,202 | INFO     | PID=2720486 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:18:13] 2025-11-25 07:18:13,202 | INFO     | .. there are 14 such processes running
[2025-11-24 23:18:13] 2025-11-25 07:18:13,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:18:13] 2025-11-25 07:18:13,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:18:13] 2025-11-25 07:18:13,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:18:13] 2025-11-25 07:18:13,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:18:13] 2025-11-25 07:18:13,203 | INFO     | [monitor] control thread has ended
[2025-11-24 23:18:13] 2025-11-25 07:18:13,331 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:18:13] 2025-11-25 07:18:13,334 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:18:13] 2025-11-25 07:18:13,336 [wrapper] pilotpid: 2720486
[2025-11-24 23:18:13] 2025-11-25 07:18:13,337 [wrapper] Pilot exit status: 0
[2025-11-24 23:18:13] 2025-11-25 07:18:13,346 [wrapper] pandaids: 6894238253
[2025-11-24 23:18:13] 2025-11-25 07:18:13,380 [wrapper] cleanup supervisor_pilot 2720492 2720487
[2025-11-24 23:18:13] 2025-11-25 07:18:13,383 [wrapper] Test setup, not cleaning
[2025-11-24 23:18:13] 2025-11-25 07:18:13,385 [wrapper] apfmon messages muted
[2025-11-24 23:18:13] 2025-11-25 07:18:13,387 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:18:13] 2025-11-25 07:18:13,389 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:18:13]  *** Error codes and diagnostics ***
[2025-11-24 23:18:13]     "exeErrorCode": 65,
[2025-11-24 23:18:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-24 23:18:13]     "pilotErrorCode": 1305,
[2025-11-24 23:18:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-24 23:18:13]  *** Listing of results directory ***
[2025-11-24 23:18:13] total 278464
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc      5112 Nov 24 12:16 queuedata.json
[2025-11-24 23:18:13] -rwx------. 1 boinc boinc     36292 Nov 24 12:17 runpilot2-wrapper.sh
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc       100 Nov 24 23:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:18:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 23:14 run_atlas
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc       105 Nov 24 23:14 job.xml
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc      6595 Nov 24 23:14 init_data.xml
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc 281027544 Nov 24 23:14 EVNT.47523673._000002.pool.root.1
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc     15847 Nov 24 23:14 start_atlas.sh
[2025-11-24 23:18:13] drwxrwx--x. 2 boinc boinc      4096 Nov 24 23:14 shared
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc    589948 Nov 24 23:14 input.tar.gz
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc         0 Nov 24 23:14 boinc_lockfile
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc      2613 Nov 24 23:14 pandaJob.out
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc    991801 Nov 24 23:14 agis_schedconf.cvmfs.json
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc   1516227 Nov 24 23:15 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:18:13] drwx------. 5 boinc boinc      4096 Nov 24 23:15 pilot3
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc       521 Nov 24 23:15 boinc_task_state.xml
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc       966 Nov 24 23:15 memory_monitor_summary.json
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc     20705 Nov 24 23:15 log.47523675._000033.job.log.tgz.1
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc      8374 Nov 24 23:17 heartbeat.json
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:18 boinc_mmap_file
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc        22 Nov 24 23:18 wrapper_checkpoint.txt
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc       823 Nov 24 23:18 pilotlog.txt
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc        95 Nov 24 23:18 pilot_heartbeat.json
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc     84877 Nov 24 23:18 log.47523675._000033.job.log.1
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc       188 Nov 24 23:18 output.list
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:18 runtime_log
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc    122880 Nov 24 23:18 result.tar.gz
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc       647 Nov 24 23:18 XfMODmKBsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHCJKDmYIRHan.diag
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc      8636 Nov 24 23:18 runtime_log.err
[2025-11-24 23:18:13] -rw-r--r--. 1 boinc boinc     21747 Nov 24 23:18 stderr.txt
[2025-11-24 23:18:13] No HITS result produced
[2025-11-24 23:18:13]  *** Contents of shared directory: ***
[2025-11-24 23:18:13] total 275164
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc 281027544 Nov 24 23:14 ATLAS.root_0
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc     15847 Nov 24 23:14 start_atlas.sh
[2025-11-24 23:18:13] -rw-r--r--. 2 boinc boinc    589948 Nov 24 23:14 input.tar.gz
[2025-11-24 23:18:13] -rw-------. 1 boinc boinc    122880 Nov 24 23:18 result.tar.gz
23:18:15 (2716839): run_atlas exited; CPU time 20.336067
23:18:15 (2716839): called boinc_finish(0)

</stderr_txt>
]]>

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