Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:34:32 (1560011): wrapper (7.7.26015): starting
18:34:32 (1560011): wrapper: running run_atlas (--nthreads 6)
[2025-11-25 18:34:32] Arguments: --nthreads 6
[2025-11-25 18:34:32] Threads: 6
[2025-11-25 18:34:32] Checking for CVMFS
[2025-11-25 18:35:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:35:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:35:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:35:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:35:33] 2.13.3.0 1560231 0 31036 153277 3 1 18542219 20971521 0 130560 0 0 0.000 1293 48 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-25 18:35:33] CVMFS is ok
[2025-11-25 18:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:35:33] Checking for apptainer binary...
[2025-11-25 18:35:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:35:33] Running /usr/bin/apptainer --version
[2025-11-25 18:35:33] apptainer version 1.4.4-1.el9
[2025-11-25 18:35:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:35:33] testio005
[2025-11-25 18:35:33] apptainer works
[2025-11-25 18:35:33] Set ATHENA_PROC_NUMBER=6
[2025-11-25 18:35:33] Set ATHENA_CORE_NUMBER=6
[2025-11-25 18:35:33] Starting ATLAS job with PandaID=6895476629
[2025-11-25 18:35:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:26:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:26:21] 2025-11-25 20:25:59,916 | INFO     | sum of square deviations: 78276110745.97469
[2025-11-26 05:26:21] 2025-11-25 20:25:59,920 | INFO     | sum of deviations: 845366891128.367
[2025-11-26 05:26:21] 2025-11-25 20:25:59,921 | INFO     | mean x: 1764082704.506329
[2025-11-26 05:26:21] 2025-11-25 20:25:59,921 | INFO     | mean y: 2665175.658227848
[2025-11-26 05:26:21] 2025-11-25 20:25:59,921 | INFO     | intersect: -19049087618.262062
[2025-11-26 05:26:21] 2025-11-25 20:25:59,921 | INFO     | chi2: 6.529439031093062
[2025-11-26 05:26:21] 2025-11-25 20:25:59,921 | INFO     | current chi2=6.529439031093062 (change=29.34493208356565 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,922 | INFO     | sum of square deviations: 76432951825.97438
[2025-11-26 05:26:21] 2025-11-25 20:25:59,926 | INFO     | sum of deviations: 974440573205.9474
[2025-11-26 05:26:21] 2025-11-25 20:25:59,926 | INFO     | mean x: 1764082552.0063796
[2025-11-26 05:26:21] 2025-11-25 20:25:59,926 | INFO     | mean y: 2675831.263157895
[2025-11-26 05:26:21] 2025-11-25 20:25:59,926 | INFO     | intersect: -22487540392.147667
[2025-11-26 05:26:21] 2025-11-25 20:25:59,927 | INFO     | chi2: 4.75671530821765
[2025-11-26 05:26:21] 2025-11-25 20:25:59,927 | INFO     | current chi2=4.75671530821765 (change=27.149709407404465 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,927 | INFO     | sum of square deviations: 74618956243.47435
[2025-11-26 05:26:21] 2025-11-25 20:25:59,931 | INFO     | sum of deviations: 959602375592.8619
[2025-11-26 05:26:21] 2025-11-25 20:25:59,931 | INFO     | mean x: 1764082399.5064309
[2025-11-26 05:26:21] 2025-11-25 20:25:59,931 | INFO     | mean y: 2674583.7845659163
[2025-11-26 05:26:21] 2025-11-25 20:25:59,932 | INFO     | intersect: -22683486500.86568
[2025-11-26 05:26:21] 2025-11-25 20:25:59,932 | INFO     | chi2: 4.755018501117117
[2025-11-26 05:26:21] 2025-11-25 20:25:59,932 | INFO     | current chi2=4.755018501117117 (change=0.03567182373941126 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,932 | INFO     | right removable region: 621
[2025-11-26 05:26:21] 2025-11-25 20:25:59,933 | INFO     | sum of square deviations: 78276108305.97469
[2025-11-26 05:26:21] 2025-11-25 20:25:59,937 | INFO     | sum of deviations: 473579998639.21484
[2025-11-26 05:26:21] 2025-11-25 20:25:59,937 | INFO     | mean x: 1764083009.506329
[2025-11-26 05:26:21] 2025-11-25 20:25:59,937 | INFO     | mean y: 2665846.4462025315
[2025-11-26 05:26:21] 2025-11-25 20:25:59,937 | INFO     | intersect: -10670251437.277546
[2025-11-26 05:26:21] 2025-11-25 20:25:59,938 | INFO     | chi2: 6.497820211822557
[2025-11-26 05:26:21] 2025-11-25 20:25:59,938 | INFO     | current chi2=6.497820211822557 (change=29.687079366411336 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,938 | INFO     | sum of square deviations: 76432946945.97438
[2025-11-26 05:26:21] 2025-11-25 20:25:59,942 | INFO     | sum of deviations: 315991260745.092
[2025-11-26 05:26:21] 2025-11-25 20:25:59,943 | INFO     | mean x: 1764083162.0063796
[2025-11-26 05:26:21] 2025-11-25 20:25:59,943 | INFO     | mean y: 2678880.476874003
[2025-11-26 05:26:21] 2025-11-25 20:25:59,943 | INFO     | intersect: -7290443845.977723
[2025-11-26 05:26:21] 2025-11-25 20:25:59,943 | INFO     | chi2: 4.736320654475497
[2025-11-26 05:26:21] 2025-11-25 20:25:59,943 | INFO     | current chi2=4.736320654475497 (change=27.109084276325053 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,944 | INFO     | sum of square deviations: 74618948923.47435
[2025-11-26 05:26:21] 2025-11-25 20:25:59,948 | INFO     | sum of deviations: 281979238855.90765
[2025-11-26 05:26:21] 2025-11-25 20:25:59,948 | INFO     | mean x: 1764083314.5064309
[2025-11-26 05:26:21] 2025-11-25 20:25:59,948 | INFO     | mean y: 2681737.273311897
[2025-11-26 05:26:21] 2025-11-25 20:25:59,948 | INFO     | intersect: -6663652719.046566
[2025-11-26 05:26:21] 2025-11-25 20:25:59,949 | INFO     | chi2: 4.688162973825259
[2025-11-26 05:26:21] 2025-11-25 20:25:59,949 | INFO     | current chi2=4.688162973825259 (change=1.0167740776742489 %)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,949 | INFO     | left removable region: 30
[2025-11-26 05:26:21] 2025-11-25 20:25:59,949 | INFO     | sum of square deviations: 64008906511.97341
[2025-11-26 05:26:21] 2025-11-25 20:25:59,953 | INFO     | sum of deviations: 511792459862.08966
[2025-11-26 05:26:21] 2025-11-25 20:25:59,953 | INFO     | mean x: 1764083284.0067682
[2025-11-26 05:26:21] 2025-11-25 20:25:59,953 | INFO     | mean y: 2713143.7275803722
[2025-11-26 05:26:21] 2025-11-25 20:25:59,953 | INFO     | intersect: -14102269623.858559
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | chi2: 0.12589200645376
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | current memory leak: 8.00 B/s (using 591 data points, chi2=0.13)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | could have reported an average CPU frequency of 3297 MHz (24 samples)
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | ..............................
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | . Timing measurements:
[2025-11-26 05:26:21] 2025-11-25 20:25:59,954 | INFO     | . get job = 0 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . initial setup = 6 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . payload setup = 9 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . stage-in = 0 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . payload execution = 38834 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . stage-out = 5 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | . log creation = 0 s
[2025-11-26 05:26:21] 2025-11-25 20:25:59,955 | INFO     | ..............................
[2025-11-26 05:26:21] 2025-11-25 20:25:59,985 | INFO     | time since job start (38928s) is within the limit (172800.0s)
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | 
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | job summary report
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | --------------------------------------------------
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | PanDA job id: 6895476629
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | task id: 47556149
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | errors: (none)
[2025-11-26 05:26:21] 2025-11-25 20:26:00,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | pilot state: finished 
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | transexitcode: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | exeerrorcode: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | exeerrordiag: 
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | exitcode: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | exitmsg: OK
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | cpuconsumptiontime: 221211 s
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | nevents: 1000
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | neventsw: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | pid: 1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | pgrp: 1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | corecount: 6
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | event service: False
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | sizes: {0: 2284150, 1: 2284292, 5: 2284554, 11: 2284610, 38846: 2327368, 38847: 2327367, 38852: 2336545, 38854: 2336601, 38914: 2336847}
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | --------------------------------------------------
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | 
[2025-11-26 05:26:21] 2025-11-25 20:26:00,015 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | job 6895476629 has completed (purged errors)
[2025-11-26 05:26:21] 2025-11-25 20:26:00,030 | INFO     | overall cleanup function is called
[2025-11-26 05:26:21] 2025-11-25 20:26:01,043 | INFO     | --- collectZombieJob: --- 10, [1571158]
[2025-11-26 05:26:21] 2025-11-25 20:26:01,043 | INFO     | zombie collector waiting for pid 1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:01,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:26:21] 2025-11-25 20:26:01,044 | INFO     | collected zombie processes
[2025-11-26 05:26:21] 2025-11-25 20:26:01,044 | INFO     | will attempt to kill all subprocesses of pid=1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:01,132 | INFO     | PID=1564413 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:26:21] 2025-11-25 20:26:01,133 | INFO     | .. there are 2 such processes running
[2025-11-26 05:26:21] 2025-11-25 20:26:01,160 | INFO     | process IDs to be killed: [1571158] (in reverse order)
[2025-11-26 05:26:21] 2025-11-25 20:26:01,192 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:26:21] 2025-11-25 20:26:01,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:26:21] 2025-11-25 20:26:01,195 | INFO     | did not find any defunct processes belonging to 1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:01,197 | INFO     | did not find any defunct processes belonging to 1571158
[2025-11-26 05:26:21] 2025-11-25 20:26:01,198 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:26:21] 2025-11-25 20:26:01,198 | INFO     | ready for new job
[2025-11-26 05:26:21] 2025-11-25 20:26:01,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:26:21] 2025-11-25 20:26:01,201 | INFO     | ***************************************
[2025-11-26 05:26:21] 2025-11-25 20:26:01,201 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:26:21] 2025-11-25 20:26:01,201 | INFO     | ***************************************
[2025-11-26 05:26:21] 2025-11-25 20:26:01,201 | INFO     | 
[2025-11-26 05:26:21] 2025-11-25 20:26:01,202 | INFO     | architecture information:
[2025-11-26 05:26:21] 2025-11-25 20:26:01,202 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:26:21] 2025-11-25 20:26:01,212 | INFO     | cat /etc/os-release:
[2025-11-26 05:26:21] NAME="CentOS Linux"
[2025-11-26 05:26:21] VERSION="7 (Core)"
[2025-11-26 05:26:21] ID="centos"
[2025-11-26 05:26:21] ID_LIKE="rhel fedora"
[2025-11-26 05:26:21] VERSION_ID="7"
[2025-11-26 05:26:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:26:21] ANSI_COLOR="0;31"
[2025-11-26 05:26:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:26:21] HOME_URL="https://www.centos.org/"
[2025-11-26 05:26:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:26:21] 
[2025-11-26 05:26:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:26:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:26:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:26:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:26:21] 
[2025-11-26 05:26:21] 2025-11-25 20:26:01,213 | INFO     | ***************************************
[2025-11-26 05:26:21] 2025-11-25 20:26:01,716 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-26 05:26:21] 2025-11-25 20:26:01,727 | INFO     | sufficient remaining disk space (89458212864 B)
[2025-11-26 05:26:21] 2025-11-25 20:26:01,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:26:21] 2025-11-25 20:26:01,727 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:26:21] 2025-11-25 20:26:01,727 | INFO     | update_server=False
[2025-11-26 05:26:21] 2025-11-25 20:26:01,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:26:21] 2025-11-25 20:26:01,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:26:21] 2025-11-25 20:26:02,012 | INFO     | all data control threads have been joined
[2025-11-26 05:26:21] 2025-11-25 20:26:02,263 | INFO     | all job control threads have been joined
[2025-11-26 05:26:21] 2025-11-25 20:26:02,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:26:21] 2025-11-25 20:26:02,456 | INFO     | aborting loop
[2025-11-26 05:26:21] 2025-11-25 20:26:02,733 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:02,733 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:02,749 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:02,774 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:02,907 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:02,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,017 | INFO     | [data] control thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,161 | INFO     | all payload control threads have been joined
[2025-11-26 05:26:21] 2025-11-25 20:26:03,265 | INFO     | [job] control thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,461 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,493 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,733 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:03,796 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:04,062 | INFO     | [job] validate thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:04,134 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:04,167 | INFO     | [payload] control thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:04,682 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:26:21] 2025-11-25 20:26:08,687 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:26:21] 2025-11-25 20:26:15,797 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:26:21] 2025-11-25 20:26:16,070 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140500215113536)>', '<ExcThread(monitor, started 140499579037440)>']
[2025-11-26 05:26:21] 2025-11-25 20:26:16,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:26:21] 2025-11-25 20:26:16,798 | INFO     | [monitor] control thread has ended
[2025-11-26 05:26:21] 2025-11-25 20:26:21,095 | INFO     | all workflow threads have been joined
[2025-11-26 05:26:21] 2025-11-25 20:26:21,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:26:21] 2025-11-25 20:26:21,095 | INFO     | traces error code: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:21,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:26:21] 2025-11-25 20:26:21,176 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:26:21] 2025-11-25 20:26:21,178 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:26:21] 2025-11-25 20:26:21,180 [wrapper] pilotpid: 1564413
[2025-11-26 05:26:21] 2025-11-25 20:26:21,182 [wrapper] Pilot exit status: 0
[2025-11-26 05:26:21] 2025-11-25 20:26:21,190 [wrapper] pandaids: 6895476629
[2025-11-26 05:26:21] 2025-11-25 20:26:21,211 [wrapper] cleanup supervisor_pilot 1697409 1564414
[2025-11-26 05:26:21] 2025-11-25 20:26:21,213 [wrapper] Test setup, not cleaning
[2025-11-26 05:26:21] 2025-11-25 20:26:21,215 [wrapper] apfmon messages muted
[2025-11-26 05:26:21] 2025-11-25 20:26:21,217 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:26:21] 2025-11-25 20:26:21,219 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:26:21]  *** Error codes and diagnostics ***
[2025-11-26 05:26:21]     "exeErrorCode": 0,
[2025-11-26 05:26:21]     "exeErrorDiag": "",
[2025-11-26 05:26:21]     "pilotErrorCode": 0,
[2025-11-26 05:26:21]     "pilotErrorDiag": "",
[2025-11-26 05:26:21]  *** Listing of results directory ***
[2025-11-26 05:26:21] total 1316856
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc    576529 Nov 24 18:01 pilot3.tar.gz
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc      5112 Nov 24 18:16 queuedata.json
[2025-11-26 05:26:21] -rwx------. 1 boinc boinc     36292 Nov 24 18:22 runpilot2-wrapper.sh
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc       100 Nov 25 18:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:26:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 18:34 run_atlas
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc       105 Nov 25 18:34 job.xml
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc 407183807 Nov 25 18:34 EVNT.47483658._001295.pool.root.1
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:34 start_atlas.sh
[2025-11-26 05:26:21] drwxrwx--x. 2 boinc boinc        68 Nov 25 18:34 shared
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc    590104 Nov 25 18:34 input.tar.gz
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc         0 Nov 25 18:34 boinc_lockfile
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc      2785 Nov 25 18:35 pandaJob.out
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc    991894 Nov 25 18:37 agis_schedconf.cvmfs.json
[2025-11-26 05:26:21] drwx------. 5 boinc boinc      4096 Nov 25 18:37 pilot3
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc      9369 Nov 25 19:05 init_data.xml
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc       533 Nov 26 05:14 boinc_task_state.xml
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc 923195358 Nov 26 05:24 HITS.47556149._002820.pool.root.1
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc      1030 Nov 26 05:24 memory_monitor_summary.json
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc   1516240 Nov 26 05:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc   1662357 Nov 26 05:24 log.47556149._002820.job.log.tgz.1
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc        95 Nov 26 05:25 pilot_heartbeat.json
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc      8574 Nov 26 05:25 heartbeat.json
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc        29 Nov 26 05:26 wrapper_checkpoint.txt
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc      8192 Nov 26 05:26 boinc_mmap_file
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc      4552 Nov 26 05:26 pilotlog.txt
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc   5422550 Nov 26 05:26 log.47556149._002820.job.log.1
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc       353 Nov 26 05:26 output.list
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc       620 Nov 26 05:26 runtime_log
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc   7106560 Nov 26 05:26 result.tar.gz
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc      8776 Nov 26 05:26 runtime_log.err
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc       652 Nov 26 05:26 jyPLDmGxhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLaLKDm5JYHXn.diag
[2025-11-26 05:26:21] -rw-r--r--. 1 boinc boinc     20894 Nov 26 05:26 stderr.txt
[2025-11-26 05:26:21] HITS file was successfully produced:
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc 923195358 Nov 26 05:24 shared/HITS.pool.root.1
[2025-11-26 05:26:21]  *** Contents of shared directory: ***
[2025-11-26 05:26:21] total 1306740
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc 407183807 Nov 25 18:34 ATLAS.root_0
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:34 start_atlas.sh
[2025-11-26 05:26:21] -rw-r--r--. 2 boinc boinc    590104 Nov 25 18:34 input.tar.gz
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc 923195358 Nov 26 05:24 HITS.pool.root.1
[2025-11-26 05:26:21] -rw-------. 1 boinc boinc   7106560 Nov 26 05:26 result.tar.gz
05:26:23 (1560011): run_atlas exited; CPU time 221251.569712
05:26:23 (1560011): called boinc_finish(0)

</stderr_txt>
]]>

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