Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:40:10 (9634): wrapper (7.7.26015): starting
03:40:10 (9634): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 03:40:10] Arguments: --nthreads 8
[2025-11-25 03:40:10] Threads: 8
[2025-11-25 03:40:10] Checking for CVMFS
[2025-11-25 03:40:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:40:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:40:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:40:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:40:10] 2.11.4.0 5420 115996 68764 153276 1 90 13029916 18432000 1725 130560 0 81837564 99.973 4928406 31824 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 03:40:10] CVMFS is ok
[2025-11-25 03:40:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 03:40:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 03:40:10] Further information can be found at the LHC@home message board.
[2025-11-25 03:40:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:40:10] Checking for apptainer binary...
[2025-11-25 03:40:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 03:40:10] Running /usr/bin/apptainer --version
[2025-11-25 03:40:10] apptainer version 1.3.2-1.el7
[2025-11-25 03:40:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:40:11] c-206-22.aglt2.org
[2025-11-25 03:40:11] apptainer works
[2025-11-25 03:40:11] Set ATHENA_PROC_NUMBER=8
[2025-11-25 03:40:11] Set ATHENA_CORE_NUMBER=8
[2025-11-25 03:40:11] Starting ATLAS job with PandaID=6895475270
[2025-11-25 03:40:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:16:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:16:24] 2025-11-26 04:15:18,459 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2494.5833333333335
[2025-11-25 23:16:24] 2025-11-26 04:15:18,461 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895475270/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,462 | INFO     | extracted standard info from prmon json
[2025-11-25 23:16:24] 2025-11-26 04:15:18,462 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:16:24] 2025-11-26 04:15:18,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:16:24] 2025-11-26 04:15:18,479 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:16:24] 2025-11-26 04:15:18,480 | INFO     | monitor loop #5051: job 0:6895475270 is in state 'finished'
[2025-11-25 23:16:24] 2025-11-26 04:15:18,487 | INFO     | sum of square deviations: 479015662131.87103
[2025-11-25 23:16:24] 2025-11-26 04:15:18,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,528 | INFO     | sum of deviations: 2158982316785.3877
[2025-11-25 23:16:24] 2025-11-26 04:15:18,528 | INFO     | mean x: 1764095275.066609
[2025-11-25 23:16:24] 2025-11-26 04:15:18,528 | INFO     | mean y: 2855623.8520761244
[2025-11-25 23:16:24] 2025-11-26 04:15:18,528 | INFO     | intersect: -7948138059.826177
[2025-11-25 23:16:24] 2025-11-26 04:15:18,530 | INFO     | chi2: 6.639943242832073
[2025-11-25 23:16:24] 2025-11-26 04:15:18,532 | INFO     | sum of square deviations: 472827076100.2585
[2025-11-25 23:16:24] 2025-11-26 04:15:18,574 | INFO     | sum of deviations: 2529602201428.4976
[2025-11-25 23:16:24] 2025-11-26 04:15:18,574 | INFO     | mean x: 1764095122.5690703
[2025-11-25 23:16:24] 2025-11-26 04:15:18,574 | INFO     | mean y: 2864752.867940921
[2025-11-25 23:16:24] 2025-11-26 04:15:18,575 | INFO     | intersect: -9434959625.518066
[2025-11-25 23:16:24] 2025-11-26 04:15:18,576 | INFO     | chi2: 3.5742922123338943
[2025-11-25 23:16:24] 2025-11-26 04:15:18,576 | INFO     | current chi2=3.5742922123338943 (change=46.16983787937644 %)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,578 | INFO     | sum of square deviations: 466692025956.13306
[2025-11-25 23:16:24] 2025-11-26 04:15:18,619 | INFO     | sum of deviations: 2714941317574.825
[2025-11-25 23:16:24] 2025-11-26 04:15:18,620 | INFO     | mean x: 1764094970.0715532
[2025-11-25 23:16:24] 2025-11-26 04:15:18,620 | INFO     | mean y: 2869358.7094240836
[2025-11-25 23:16:24] 2025-11-26 04:15:18,620 | INFO     | intersect: -10259603655.61066
[2025-11-25 23:16:24] 2025-11-26 04:15:18,622 | INFO     | chi2: 2.720679637083077
[2025-11-25 23:16:24] 2025-11-26 04:15:18,622 | INFO     | current chi2=2.720679637083077 (change=23.882003052387162 %)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,622 | INFO     | right removable region: 1145
[2025-11-25 23:16:24] 2025-11-26 04:15:18,624 | INFO     | sum of square deviations: 472826676550.2583
[2025-11-25 23:16:24] 2025-11-26 04:15:18,665 | INFO     | sum of deviations: 1852447045859.5583
[2025-11-25 23:16:24] 2025-11-26 04:15:18,665 | INFO     | mean x: 1764095427.5690703
[2025-11-25 23:16:24] 2025-11-26 04:15:18,665 | INFO     | mean y: 2863169.25716768
[2025-11-25 23:16:24] 2025-11-26 04:15:18,665 | INFO     | intersect: -6908534866.186215
[2025-11-25 23:16:24] 2025-11-26 04:15:18,667 | INFO     | chi2: 4.547160155466729
[2025-11-25 23:16:24] 2025-11-26 04:15:18,667 | INFO     | current chi2=4.547160155466729 (change=31.51808699004374 %)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,669 | INFO     | sum of square deviations: 466691577911.82635
[2025-11-25 23:16:24] 2025-11-26 04:15:18,710 | INFO     | sum of deviations: 1763044886030.1162
[2025-11-25 23:16:24] 2025-11-26 04:15:18,711 | INFO     | mean x: 1764095580.0671902
[2025-11-25 23:16:24] 2025-11-26 04:15:18,711 | INFO     | mean y: 2865391.1413612566
[2025-11-25 23:16:24] 2025-11-26 04:15:18,711 | INFO     | intersect: -6661449625.688465
[2025-11-25 23:16:24] 2025-11-26 04:15:18,713 | INFO     | chi2: 4.461979799659324
[2025-11-25 23:16:24] 2025-11-26 04:15:18,713 | INFO     | current chi2=4.461979799659324 (change=1.8732649146962377 %)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,713 | INFO     | left removable region: 20
[2025-11-25 23:16:24] 2025-11-26 04:15:18,715 | INFO     | sum of square deviations: 441503346123.3457
[2025-11-25 23:16:24] 2025-11-26 04:15:18,737 | INFO     | sum of deviations: 2212208142694.573
[2025-11-25 23:16:24] 2025-11-26 04:15:18,737 | INFO     | mean x: 1764095549.5724444
[2025-11-25 23:16:24] 2025-11-26 04:15:18,737 | INFO     | mean y: 2883094.870222222
[2025-11-25 23:16:24] 2025-11-26 04:15:18,737 | INFO     | intersect: -8836339922.400272
[2025-11-25 23:16:24] 2025-11-26 04:15:18,738 | INFO     | chi2: 0.4142451400654687
[2025-11-25 23:16:24] 2025-11-26 04:15:18,739 | INFO     | current memory leak: 5.01 B/s (using 1125 data points, chi2=0.41)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | could have reported an average CPU frequency of 2628 MHz (42 samples)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | ..............................
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . Timing measurements:
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . get job = 0 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . initial setup = 2 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . payload setup = 5 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . stage-in = 0 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,740 | INFO     | . payload execution = 70461 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,741 | INFO     | . stage-out = 4 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,741 | INFO     | . log creation = 0 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,741 | INFO     | ..............................
[2025-11-25 23:16:24] 2025-11-26 04:15:18,890 | INFO     | 
[2025-11-25 23:16:24] 2025-11-26 04:15:18,890 | INFO     | job summary report
[2025-11-25 23:16:24] 2025-11-26 04:15:18,890 | INFO     | --------------------------------------------------
[2025-11-25 23:16:24] 2025-11-26 04:15:18,890 | INFO     | PanDA job id: 6895475270
[2025-11-25 23:16:24] 2025-11-26 04:15:18,890 | INFO     | task id: 47556149
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | errors: (none)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | pilot state: finished 
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | transexitcode: 0
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | exeerrorcode: 0
[2025-11-25 23:16:24] 2025-11-26 04:15:18,891 | INFO     | exeerrordiag: 
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | exitcode: 0
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | exitmsg: OK
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | cpuconsumptiontime: 540604 s
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | nevents: 1000
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | neventsw: 0
[2025-11-25 23:16:24] 2025-11-26 04:15:18,892 | INFO     | pid: 19839
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | pgrp: 19839
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | corecount: 8
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | event service: False
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | sizes: {0: 2283487, 1: 2284343, 4: 2284605, 12: 2284633, 70470: 2341427, 70475: 2350421, 70476: 2350605, 70482: 2350851}
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | --------------------------------------------------
[2025-11-25 23:16:24] 2025-11-26 04:15:18,893 | INFO     | 
[2025-11-25 23:16:24] 2025-11-26 04:15:18,894 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 23:16:24] 2025-11-26 04:15:18,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:16:24] 2025-11-26 04:15:18,922 | INFO     | job 6895475270 has completed (purged errors)
[2025-11-25 23:16:24] 2025-11-26 04:15:18,923 | INFO     | overall cleanup function is called
[2025-11-25 23:16:24] 2025-11-26 04:15:19,939 | INFO     | --- collectZombieJob: --- 10, [19839]
[2025-11-25 23:16:24] 2025-11-26 04:15:19,939 | INFO     | zombie collector waiting for pid 19839
[2025-11-25 23:16:24] 2025-11-26 04:15:19,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:16:24] 2025-11-26 04:15:19,940 | INFO     | collected zombie processes
[2025-11-25 23:16:24] 2025-11-26 04:15:19,940 | INFO     | will attempt to kill all subprocesses of pid=19839
[2025-11-25 23:16:24] 2025-11-26 04:15:20,117 | INFO     | process IDs to be killed: [19839] (in reverse order)
[2025-11-25 23:16:24] 2025-11-26 04:15:20,179 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:16:24] 2025-11-26 04:15:20,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:16:24] 2025-11-26 04:15:20,185 | INFO     | did not find any defunct processes belonging to 19839
[2025-11-25 23:16:24] 2025-11-26 04:15:20,189 | INFO     | did not find any defunct processes belonging to 19839
[2025-11-25 23:16:24] 2025-11-26 04:15:20,191 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:16:24] 2025-11-26 04:15:20,192 | INFO     | ready for new job
[2025-11-25 23:16:24] 2025-11-26 04:15:20,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:16:24] 2025-11-26 04:15:20,196 | INFO     | ***************************************
[2025-11-25 23:16:24] 2025-11-26 04:15:20,197 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:16:24] 2025-11-26 04:15:20,197 | INFO     | ***************************************
[2025-11-25 23:16:24] 2025-11-26 04:15:20,197 | INFO     | 
[2025-11-25 23:16:24] 2025-11-26 04:15:20,198 | INFO     | architecture information:
[2025-11-25 23:16:24] 2025-11-26 04:15:20,198 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:16:24] 2025-11-26 04:15:20,211 | INFO     | cat /etc/os-release:
[2025-11-25 23:16:24] NAME="CentOS Linux"
[2025-11-25 23:16:24] VERSION="7 (Core)"
[2025-11-25 23:16:24] ID="centos"
[2025-11-25 23:16:24] ID_LIKE="rhel fedora"
[2025-11-25 23:16:24] VERSION_ID="7"
[2025-11-25 23:16:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:16:24] ANSI_COLOR="0;31"
[2025-11-25 23:16:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:16:24] HOME_URL="https://www.centos.org/"
[2025-11-25 23:16:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:16:24] 
[2025-11-25 23:16:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:16:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:16:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:16:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:16:24] 
[2025-11-25 23:16:24] 2025-11-26 04:15:20,212 | INFO     | ***************************************
[2025-11-25 23:16:24] 2025-11-26 04:15:20,714 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 23:16:24] 2025-11-26 04:15:20,728 | INFO     | sufficient remaining disk space (26575110144 B)
[2025-11-25 23:16:24] 2025-11-26 04:15:20,728 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:16:24] 2025-11-26 04:15:20,729 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:16:24] 2025-11-26 04:15:20,729 | INFO     | update_server=False
[2025-11-25 23:16:24] 2025-11-26 04:15:20,729 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:16:24] 2025-11-26 04:15:20,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:16:24] 2025-11-26 04:15:20,995 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 23:16:24] 2025-11-26 04:15:20,995 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 23:16:24] 2025-11-26 04:15:20,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:16:24] 2025-11-26 04:15:20,995 | INFO     | will abort loop
[2025-11-25 23:16:24] 2025-11-26 04:15:21,683 | INFO     | all data control threads have been joined
[2025-11-25 23:16:24] 2025-11-26 04:15:21,714 | INFO     | all job control threads have been joined
[2025-11-25 23:16:24] 2025-11-26 04:15:21,735 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:21,735 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:21,877 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:21,878 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,002 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:16:24] 2025-11-26 04:15:22,203 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,207 | INFO     | all payload control threads have been joined
[2025-11-25 23:16:24] 2025-11-26 04:15:22,457 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,550 | INFO     | [job] validate thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,570 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,683 | INFO     | [data] control thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,710 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,719 | INFO     | [job] control thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:22,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:23,213 | INFO     | [payload] control thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:23,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:16:24] 2025-11-26 04:15:24,047 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:27,599 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:16:24] 2025-11-26 04:15:51,217 | INFO     | PID=13355 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:16:24] 2025-11-26 04:15:51,217 | INFO     | .. there are 3 such processes running
[2025-11-25 23:16:24] 2025-11-26 04:15:51,218 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:16:24] 2025-11-26 04:15:51,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:16:24] 2025-11-26 04:15:51,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:16:24] 2025-11-26 04:16:18,999 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:16:24] 2025-11-26 04:16:19,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140150083438400)>', '<ExcThread(monitor, started 140149337876224)>']
[2025-11-25 23:16:24] 2025-11-26 04:16:19,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:16:24] 2025-11-26 04:16:19,355 | INFO     | [monitor] control thread has ended
[2025-11-25 23:16:24] 2025-11-26 04:16:24,121 | INFO     | all workflow threads have been joined
[2025-11-25 23:16:24] 2025-11-26 04:16:24,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:16:24] 2025-11-26 04:16:24,122 | INFO     | traces error code: 0
[2025-11-25 23:16:24] 2025-11-26 04:16:24,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:16:24] 2025-11-26 04:16:24,266 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:16:24] 2025-11-26 04:16:24,268 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:16:24] 2025-11-26 04:16:24,271 [wrapper] pilotpid: 13355
[2025-11-25 23:16:24] 2025-11-26 04:16:24,273 [wrapper] Pilot exit status: 0
[2025-11-25 23:16:24] 2025-11-26 04:16:24,282 [wrapper] pandaids: 6895475270
[2025-11-25 23:16:24] 2025-11-26 04:16:24,313 [wrapper] cleanup supervisor_pilot 21756 13356
[2025-11-25 23:16:24] 2025-11-26 04:16:24,315 [wrapper] Test setup, not cleaning
[2025-11-25 23:16:24] 2025-11-26 04:16:24,318 [wrapper] apfmon messages muted
[2025-11-25 23:16:24] 2025-11-26 04:16:24,320 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:16:24] 2025-11-26 04:16:24,322 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:16:24]  *** Error codes and diagnostics ***
[2025-11-25 23:16:24]     "exeErrorCode": 0,
[2025-11-25 23:16:24]     "exeErrorDiag": "",
[2025-11-25 23:16:24]     "pilotErrorCode": 0,
[2025-11-25 23:16:24]     "pilotErrorDiag": "",
[2025-11-25 23:16:24]  *** Listing of results directory ***
[2025-11-25 23:16:24] total 1317816
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 03:46 pilot3.tar.gz
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 03:53 queuedata.json
[2025-11-25 23:16:24] -rwx------ 1 boincer umatlas     36292 Nov 24 03:55 runpilot2-wrapper.sh
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas       100 Nov 25 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:16:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 03:40 run_atlas
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas       105 Nov 25 03:40 job.xml
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas 409667965 Nov 25 03:40 EVNT.47483658._001284.pool.root.1
[2025-11-25 23:16:24] drwxrwx--x 2 boincer umatlas      4096 Nov 25 03:40 shared
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas    590110 Nov 25 03:40 input.tar.gz
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 03:40 start_atlas.sh
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas         0 Nov 25 03:40 boinc_lockfile
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 03:40 pandaJob.out
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas        57 Nov 25 03:40 setup.sh.local
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas    991858 Nov 25 03:40 agis_schedconf.cvmfs.json
[2025-11-25 23:16:24] drwx------ 5 boincer umatlas      4096 Nov 25 03:40 pilot3
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas       533 Nov 25 23:00 boinc_task_state.xml
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas      5952 Nov 25 23:12 init_data.xml
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas 911651985 Nov 25 23:14 HITS.47556149._002709.pool.root.1
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas      1080 Nov 25 23:15 memory_monitor_summary.json
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas   1516240 Nov 25 23:15 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas   2326045 Nov 25 23:15 log.47556149._002709.job.log.tgz.1
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas      8662 Nov 25 23:15 heartbeat.json
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas        95 Nov 25 23:15 pilot_heartbeat.json
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 23:16 boinc_mmap_file
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas        29 Nov 25 23:16 wrapper_checkpoint.txt
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas      5007 Nov 25 23:16 pilotlog.txt
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas   9774884 Nov 25 23:16 log.47556149._002709.job.log.1
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas       353 Nov 25 23:16 output.list
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas       620 Nov 25 23:16 runtime_log
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas  12124160 Nov 25 23:16 result.tar.gz
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 23:16 runtime_log.err
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas       668 Nov 25 23:16 KE6MDm2Whh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhzIKDmvM1Oxm.diag
[2025-11-25 23:16:24] -rw-r--r-- 1 boincer umatlas     21318 Nov 25 23:16 stderr.txt
[2025-11-25 23:16:24] HITS file was successfully produced:
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas 911651985 Nov 25 23:14 shared/HITS.pool.root.1
[2025-11-25 23:16:24]  *** Contents of shared directory: ***
[2025-11-25 23:16:24] total 1302796
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas 409667965 Nov 25 03:40 ATLAS.root_0
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas    590110 Nov 25 03:40 input.tar.gz
[2025-11-25 23:16:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 03:40 start_atlas.sh
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas 911651985 Nov 25 23:14 HITS.pool.root.1
[2025-11-25 23:16:24] -rw------- 1 boincer umatlas  12124160 Nov 25 23:16 result.tar.gz
23:16:25 (9634): run_atlas exited; CPU time 539305.454710
23:16:25 (9634): called boinc_finish(0)

</stderr_txt>
]]>

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