Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:27 (30052): wrapper (7.7.26015): starting
18:38:27 (30052): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 18:38:27] Arguments: --nthreads 8
[2025-11-27 18:38:27] Threads: 8
[2025-11-27 18:38:27] Checking for CVMFS
[2025-11-27 18:38:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 18:38:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 18:38:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 18:38:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 18:38:29] 2.11.2.0 6410 286920 136380 153377 2 84 15237096 25165824 1288 130560 13 134315333 99.887 76769344 2964 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 18:38:29] CVMFS is ok
[2025-11-27 18:38:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:38:29] Checking for apptainer binary...
[2025-11-27 18:38:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 18:38:29] Running /usr/bin/apptainer --version
[2025-11-27 18:38:30] apptainer version 1.3.2-1.el7
[2025-11-27 18:38:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:38:41] cg-vwn284.simple-grid.lan
[2025-11-27 18:38:41] apptainer works
[2025-11-27 18:38:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 18:38:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 18:38:41] Starting ATLAS job with PandaID=6895372672
[2025-11-27 18:38:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 18:00:16]  *** The last 200 lines of the pilot log: ***
[2025-11-28 18:00:16] 2025-11-28 16:59:13,833 | INFO     | time since job start (83792s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:15,841 | INFO     | time since job start (83794s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:16,079 | INFO     | monitor loop #5642: job 0:6895372672 is in state 'finished'
[2025-11-28 18:00:16] 2025-11-28 16:59:16,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 18:00:16] 2025-11-28 16:59:17,849 | INFO     | time since job start (83796s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:18,587 | INFO     | monitor loop #5643: job 0:6895372672 is in state 'finished'
[2025-11-28 18:00:16] 2025-11-28 16:59:18,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 18:00:16] 2025-11-28 16:59:19,861 | INFO     | time since job start (83798s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:21,093 | INFO     | monitor loop #5644: job 0:6895372672 is in state 'finished'
[2025-11-28 18:00:16] 2025-11-28 16:59:21,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 18:00:16] 2025-11-28 16:59:21,868 | INFO     | time since job start (83800s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:23,598 | INFO     | monitor loop #5645: job 0:6895372672 is in state 'finished'
[2025-11-28 18:00:16] 2025-11-28 16:59:23,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 18:00:16] 2025-11-28 16:59:23,875 | INFO     | time since job start (83802s) is within the limit (172800.0s)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,413 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 18:00:16] 2025-11-28 16:59:24,415 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 18:00:16] 2025-11-28 16:59:24,417 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895372672/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,418 | INFO     | extracted standard info from prmon json
[2025-11-28 18:00:16] 2025-11-28 16:59:24,418 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 18:00:16] 2025-11-28 16:59:24,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 18:00:16] 2025-11-28 16:59:24,442 | INFO     | fitting pss+swap vs Time
[2025-11-28 18:00:16] 2025-11-28 16:59:24,444 | INFO     | sum of square deviations: 788634369308.8306
[2025-11-28 18:00:16] 2025-11-28 16:59:24,508 | INFO     | sum of deviations: 3075260026041.325
[2025-11-28 18:00:16] 2025-11-28 16:59:24,508 | INFO     | mean x: 1764307454.0615385
[2025-11-28 18:00:16] 2025-11-28 16:59:24,508 | INFO     | mean y: 2841841.2461538464
[2025-11-28 18:00:16] 2025-11-28 16:59:24,508 | INFO     | intersect: -6877031010.196205
[2025-11-28 18:00:16] 2025-11-28 16:59:24,510 | INFO     | chi2: 23.564483198325426
[2025-11-28 18:00:16] 2025-11-28 16:59:24,512 | INFO     | sum of square deviations: 780000193538.172
[2025-11-28 18:00:16] 2025-11-28 16:59:24,588 | INFO     | sum of deviations: 3524118459432.419
[2025-11-28 18:00:16] 2025-11-28 16:59:24,589 | INFO     | mean x: 1764307301.5654411
[2025-11-28 18:00:16] 2025-11-28 16:59:24,589 | INFO     | mean y: 2849767.894117647
[2025-11-28 18:00:16] 2025-11-28 16:59:24,589 | INFO     | intersect: -7968466112.624172
[2025-11-28 18:00:16] 2025-11-28 16:59:24,591 | INFO     | chi2: 20.37485941443537
[2025-11-28 18:00:16] 2025-11-28 16:59:24,591 | INFO     | current chi2=20.37485941443537 (change=13.535725596208797 %)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,591 | INFO     | right removable region: 1359
[2025-11-28 18:00:16] 2025-11-28 16:59:24,593 | INFO     | sum of square deviations: 779999309648.173
[2025-11-28 18:00:16] 2025-11-28 16:59:24,666 | INFO     | sum of deviations: 2494752184213.344
[2025-11-28 18:00:16] 2025-11-28 16:59:24,666 | INFO     | mean x: 1764307606.5654411
[2025-11-28 18:00:16] 2025-11-28 16:59:24,666 | INFO     | mean y: 2852093.1477941177
[2025-11-28 18:00:16] 2025-11-28 16:59:24,666 | INFO     | intersect: -5640114766.769941
[2025-11-28 18:00:16] 2025-11-28 16:59:24,668 | INFO     | chi2: 18.721997118188042
[2025-11-28 18:00:16] 2025-11-28 16:59:24,668 | INFO     | current chi2=18.721997118188042 (change=20.549935423500006 %)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,668 | INFO     | left removable region: 10
[2025-11-28 18:00:16] 2025-11-28 16:59:24,670 | INFO     | sum of square deviations: 761225576254.5872
[2025-11-28 18:00:16] 2025-11-28 16:59:24,724 | INFO     | sum of deviations: 2555326754570.736
[2025-11-28 18:00:16] 2025-11-28 16:59:24,724 | INFO     | mean x: 1764307576.0741289
[2025-11-28 18:00:16] 2025-11-28 16:59:24,724 | INFO     | mean y: 2870648.1326908823
[2025-11-28 18:00:16] 2025-11-28 16:59:24,724 | INFO     | intersect: -5919660718.477967
[2025-11-28 18:00:16] 2025-11-28 16:59:24,726 | INFO     | chi2: 11.3770983492379
[2025-11-28 18:00:16] 2025-11-28 16:59:24,726 | INFO     | current memory leak: 3.36 B/s (using 1349 data points, chi2=11.38)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,727 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,727 | INFO     | ..............................
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . Timing measurements:
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . get job = 0 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . initial setup = 6 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . payload setup = 159 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . stage-in = 0 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . payload execution = 83376 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . stage-out = 5 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | . log creation = 1 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,728 | INFO     | ..............................
[2025-11-28 18:00:16] 2025-11-28 16:59:24,868 | INFO     | 
[2025-11-28 18:00:16] 2025-11-28 16:59:24,868 | INFO     | job summary report
[2025-11-28 18:00:16] 2025-11-28 16:59:24,868 | INFO     | --------------------------------------------------
[2025-11-28 18:00:16] 2025-11-28 16:59:24,868 | INFO     | PanDA job id: 6895372672
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | task id: 47556137
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | errors: (none)
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | pilot state: finished 
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | transexitcode: 0
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | exeerrorcode: 0
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | exeerrordiag: 
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | exitcode: 0
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | exitmsg: OK
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | cpuconsumptiontime: 314897 s
[2025-11-28 18:00:16] 2025-11-28 16:59:24,869 | INFO     | nevents: 1000
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | neventsw: 0
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | pid: 8086
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | pgrp: 8086
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | corecount: 8
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | event service: False
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 75: 2284907, 77: 2284935, 83536: 2344191,
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | --------------------------------------------------
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | 
[2025-11-28 18:00:16] 2025-11-28 16:59:24,870 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-28 18:00:16] 2025-11-28 16:59:25,488 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,490 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 18:00:16] 2025-11-28 16:59:25,491 | INFO     | job 6895372672 has completed (purged errors)
[2025-11-28 18:00:16] 2025-11-28 16:59:25,491 | INFO     | overall cleanup function is called
[2025-11-28 18:00:16] 2025-11-28 16:59:26,507 | INFO     | --- collectZombieJob: --- 10, [8086]
[2025-11-28 18:00:16] 2025-11-28 16:59:26,507 | INFO     | zombie collector waiting for pid 8086
[2025-11-28 18:00:16] 2025-11-28 16:59:26,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 18:00:16] 2025-11-28 16:59:26,508 | INFO     | collected zombie processes
[2025-11-28 18:00:16] 2025-11-28 16:59:26,508 | INFO     | will attempt to kill all subprocesses of pid=8086
[2025-11-28 18:00:16] 2025-11-28 16:59:26,638 | INFO     | process IDs to be killed: [8086] (in reverse order)
[2025-11-28 18:00:16] 2025-11-28 16:59:27,334 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 18:00:16] 2025-11-28 16:59:27,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 18:00:16] 2025-11-28 16:59:27,337 | INFO     | did not find any defunct processes belonging to 8086
[2025-11-28 18:00:16] 2025-11-28 16:59:27,339 | INFO     | did not find any defunct processes belonging to 8086
[2025-11-28 18:00:16] 2025-11-28 16:59:27,383 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 18:00:16] 2025-11-28 16:59:27,384 | INFO     | ready for new job
[2025-11-28 18:00:16] 2025-11-28 16:59:27,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 18:00:16] 2025-11-28 16:59:27,388 | INFO     | ***************************************
[2025-11-28 18:00:16] 2025-11-28 16:59:27,389 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 18:00:16] 2025-11-28 16:59:27,389 | INFO     | ***************************************
[2025-11-28 18:00:16] 2025-11-28 16:59:27,389 | INFO     | 
[2025-11-28 18:00:16] 2025-11-28 16:59:27,389 | INFO     | pilot is running in a VM
[2025-11-28 18:00:16] 2025-11-28 16:59:27,389 | INFO     | architecture information:
[2025-11-28 18:00:16] 2025-11-28 16:59:27,401 | INFO     | executing command: cat /etc/os-release
[2025-11-28 18:00:16] 2025-11-28 16:59:27,720 | INFO     | cat /etc/os-release:
[2025-11-28 18:00:16] NAME="CentOS Linux"
[2025-11-28 18:00:16] VERSION="7 (Core)"
[2025-11-28 18:00:16] ID="centos"
[2025-11-28 18:00:16] ID_LIKE="rhel fedora"
[2025-11-28 18:00:16] VERSION_ID="7"
[2025-11-28 18:00:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 18:00:16] ANSI_COLOR="0;31"
[2025-11-28 18:00:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 18:00:16] HOME_URL="https://www.centos.org/"
[2025-11-28 18:00:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 18:00:16] 
[2025-11-28 18:00:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 18:00:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 18:00:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 18:00:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 18:00:16] 
[2025-11-28 18:00:16] 2025-11-28 16:59:27,721 | INFO     | ***************************************
[2025-11-28 18:00:16] 2025-11-28 16:59:28,224 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-28 18:00:16] 2025-11-28 16:59:28,428 | INFO     | sufficient remaining disk space (495434334208 B)
[2025-11-28 18:00:16] 2025-11-28 16:59:28,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 18:00:16] 2025-11-28 16:59:28,428 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 18:00:16] 2025-11-28 16:59:28,428 | INFO     | update_server=False
[2025-11-28 18:00:16] 2025-11-28 16:59:28,428 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 18:00:16] 2025-11-28 16:59:28,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 18:00:16] 2025-11-28 16:59:28,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 18:00:16] 2025-11-28 16:59:28,621 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 18:00:16] 2025-11-28 16:59:28,621 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 18:00:16] 2025-11-28 16:59:28,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:00:16] 2025-11-28 16:59:28,622 | INFO     | will abort loop
[2025-11-28 18:00:16] 2025-11-28 16:59:28,844 | INFO     | all payload control threads have been joined
[2025-11-28 18:00:16] 2025-11-28 16:59:29,223 | INFO     | all job control threads have been joined
[2025-11-28 18:00:16] 2025-11-28 16:59:29,315 | INFO     | all data control threads have been joined
[2025-11-28 18:00:16] 2025-11-28 16:59:29,433 | INFO     | [job] retrieve thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,627 | INFO     | [job] job monitor thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,719 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,769 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,850 | INFO     | [payload] control thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:29,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:00:16] 2025-11-28 16:59:30,229 | INFO     | [job] control thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,321 | INFO     | [data] control thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,405 | INFO     | [data] copytool_in thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,435 | INFO     | [data] copytool_out thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,440 | INFO     | [job] validate thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,540 | INFO     | [payload] failed_post thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,858 | INFO     | [payload] validate_post thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:30,888 | INFO     | [job] queue monitor thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:32,454 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 18:00:16] 2025-11-28 16:59:57,044 | INFO     | PID=1446 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 18:00:16] 2025-11-28 16:59:57,045 | INFO     | .. there are 9 such processes running
[2025-11-28 18:00:16] 2025-11-28 16:59:57,046 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 18:00:16] 2025-11-28 16:59:57,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 18:00:16] 2025-11-28 16:59:57,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 18:00:16] 2025-11-28 17:00:07,874 | INFO     | [monitor] cgroup control has ended
[2025-11-28 18:00:16] 2025-11-28 17:00:08,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616918411072)>', '<ExcThread(monitor, started 140616323282688)>']
[2025-11-28 18:00:16] 2025-11-28 17:00:09,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 18:00:16] 2025-11-28 17:00:09,117 | INFO     | [monitor] control thread has ended
[2025-11-28 18:00:16] 2025-11-28 17:00:13,746 | INFO     | all workflow threads have been joined
[2025-11-28 18:00:16] 2025-11-28 17:00:13,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 18:00:16] 2025-11-28 17:00:13,747 | INFO     | traces error code: 0
[2025-11-28 18:00:16] 2025-11-28 17:00:13,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 18:00:16] 2025-11-28 17:00:14,025 [wrapper] ==== pilot stdout END ====
[2025-11-28 18:00:16] 2025-11-28 17:00:14,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 18:00:16] 2025-11-28 17:00:14,216 [wrapper] pilotpid: 1446
[2025-11-28 18:00:16] 2025-11-28 17:00:14,318 [wrapper] Pilot exit status: 0
[2025-11-28 18:00:16] 2025-11-28 17:00:14,732 [wrapper] pandaids: 6895372672
[2025-11-28 18:00:16] 2025-11-28 17:00:15,266 [wrapper] cleanup supervisor_pilot 27465 1447
[2025-11-28 18:00:16] 2025-11-28 17:00:15,293 [wrapper] Test setup, not cleaning
[2025-11-28 18:00:16] 2025-11-28 17:00:15,328 [wrapper] apfmon messages muted
[2025-11-28 18:00:16] 2025-11-28 17:00:15,354 [wrapper] ==== wrapper stdout END ====
[2025-11-28 18:00:16] 2025-11-28 17:00:15,431 [wrapper] ==== wrapper stderr END ====
[2025-11-28 18:00:16]  *** Error codes and diagnostics ***
[2025-11-28 18:00:16]     "exeErrorCode": 0,
[2025-11-28 18:00:16]     "exeErrorDiag": "",
[2025-11-28 18:00:16]     "pilotErrorCode": 0,
[2025-11-28 18:00:16]     "pilotErrorDiag": "",
[2025-11-28 18:00:16]  *** Listing of results directory ***
[2025-11-28 18:00:16] total 1339756
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc    576529 Nov 23 22:55 pilot3.tar.gz
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc      5112 Nov 23 23:06 queuedata.json
[2025-11-28 18:00:16] -rwx------. 1 boinc boinc     36292 Nov 23 23:09 runpilot2-wrapper.sh
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc       100 Nov 27 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 18:00:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 18:38 run_atlas
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc       105 Nov 27 18:38 job.xml
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc      6392 Nov 27 18:38 init_data.xml
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc 412098492 Nov 27 18:38 EVNT.47483658._000911.pool.root.1
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc     15847 Nov 27 18:38 start_atlas.sh
[2025-11-28 18:00:16] drwxrwx--x. 2 boinc boinc        68 Nov 27 18:38 shared
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc    590098 Nov 27 18:38 input.tar.gz
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc         0 Nov 27 18:38 boinc_lockfile
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc      2785 Nov 27 18:38 pandaJob.out
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc    991231 Nov 27 18:42 agis_schedconf.cvmfs.json
[2025-11-28 18:00:16] drwx------. 5 boinc boinc      4096 Nov 27 18:42 pilot3
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc       533 Nov 28 17:35 boinc_task_state.xml
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc 928660899 Nov 28 17:56 HITS.47556137._008972.pool.root.1
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc      1028 Nov 28 17:57 memory_monitor_summary.json
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc   1516240 Nov 28 17:57 agis_ddmendpoints.agis.ALL.json
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc   2457525 Nov 28 17:57 log.47556137._008972.job.log.tgz.1
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc      7943 Nov 28 17:59 heartbeat.json
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc        95 Nov 28 17:59 pilot_heartbeat.json
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc      8192 Nov 28 18:00 boinc_mmap_file
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc        29 Nov 28 18:00 wrapper_checkpoint.txt
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc      5070 Nov 28 18:00 pilotlog.txt
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc  11173614 Nov 28 18:00 log.47556137._008972.job.log.1
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc       353 Nov 28 18:00 output.list
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc       620 Nov 28 18:00 runtime_log
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc  13649920 Nov 28 18:00 result.tar.gz
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc      8833 Nov 28 18:00 runtime_log.err
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc       662 Nov 28 18:00 PgFMDmvRXh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpmIKDmROMIVm.diag
[2025-11-28 18:00:16] -rw-r--r--. 1 boinc boinc     21404 Nov 28 18:00 stderr.txt
[2025-11-28 18:00:16] HITS file was successfully produced:
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc 928660899 Nov 28 17:56 shared/HITS.pool.root.1
[2025-11-28 18:00:16]  *** Contents of shared directory: ***
[2025-11-28 18:00:16] total 1323264
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc 412098492 Nov 27 18:38 ATLAS.root_0
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc     15847 Nov 27 18:38 start_atlas.sh
[2025-11-28 18:00:16] -rw-r--r--. 2 boinc boinc    590098 Nov 27 18:38 input.tar.gz
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc 928660899 Nov 28 17:56 HITS.pool.root.1
[2025-11-28 18:00:16] -rw-------. 1 boinc boinc  13649920 Nov 28 18:00 result.tar.gz
18:00:18 (30052): run_atlas exited; CPU time 315447.254397
18:00:18 (30052): called boinc_finish(0)

</stderr_txt>
]]>

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