Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:39:48 (1814931): wrapper (7.7.26015): starting
02:39:48 (1814931): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:39:48] Arguments: --nthreads 8
[2025-11-25 02:39:48] Threads: 8
[2025-11-25 02:39:48] Checking for CVMFS
[2025-11-25 02:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:39:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:39:49] 2.13.2.0 6491 34775 223424 153275 1 369 30308036 40960000 27797 16776704 0 145236326 99.580 146388247 40406 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 02:39:49] CVMFS is ok
[2025-11-25 02:39:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:39:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:39:50] Further information can be found at the LHC@home message board.
[2025-11-25 02:39:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:39:50] Checking for apptainer binary...
[2025-11-25 02:39:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:39:50] Running /usr/bin/apptainer --version
[2025-11-25 02:39:50] apptainer version 1.4.4-1.el9
[2025-11-25 02:39:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:39:50] c-212-20.aglt2.org
[2025-11-25 02:39:50] apptainer works
[2025-11-25 02:39:50] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:39:50] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:39:50] Starting ATLAS job with PandaID=6895336144
[2025-11-25 02:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:46:04]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:46:04] 2025-11-26 04:45:19,988 | INFO     | time since job start (75892s) is within the limit (172800.0s)
[2025-11-25 23:46:04] 2025-11-26 04:45:21,369 | INFO     | monitor loop #4795: job 0:6895336144 is in state 'finished'
[2025-11-25 23:46:04] 2025-11-26 04:45:21,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:46:04] 2025-11-26 04:45:21,996 | INFO     | time since job start (75894s) is within the limit (172800.0s)
[2025-11-25 23:46:04] 2025-11-26 04:45:23,873 | INFO     | monitor loop #4796: job 0:6895336144 is in state 'finished'
[2025-11-25 23:46:04] 2025-11-26 04:45:23,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:46:04] 2025-11-26 04:45:24,007 | INFO     | time since job start (75897s) is within the limit (172800.0s)
[2025-11-25 23:46:04] 2025-11-26 04:45:26,014 | INFO     | time since job start (75899s) is within the limit (172800.0s)
[2025-11-25 23:46:04] 2025-11-26 04:45:26,382 | INFO     | monitor loop #4797: job 0:6895336144 is in state 'finished'
[2025-11-25 23:46:04] 2025-11-26 04:45:26,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:46:04] 2025-11-26 04:45:28,279 | INFO     | PID=1820221 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 23:46:04] 2025-11-26 04:45:28,279 | INFO     | .. there are 32 such processes running
[2025-11-25 23:46:04] 2025-11-26 04:45:28,887 | INFO     | monitor loop #4798: job 0:6895336144 is in state 'finished'
[2025-11-25 23:46:04] 2025-11-26 04:45:28,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:46:04] 2025-11-26 04:45:29,280 | INFO     | time since job start (75902s) is within the limit (172800.0s)
[2025-11-25 23:46:04] 2025-11-26 04:45:29,838 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:46:04] 2025-11-26 04:45:29,852 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3352.6108854166664
[2025-11-25 23:46:04] 2025-11-26 04:45:29,868 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895336144/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:46:04] 2025-11-26 04:45:29,869 | INFO     | extracted standard info from prmon json
[2025-11-25 23:46:04] 2025-11-26 04:45:29,869 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:46:04] 2025-11-26 04:45:29,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:46:04] 2025-11-26 04:45:29,886 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:46:04] 2025-11-26 04:45:29,887 | INFO     | sum of square deviations: 595499611723.458
[2025-11-25 23:46:04] 2025-11-26 04:45:29,959 | INFO     | sum of deviations: 15812952733899.29
[2025-11-25 23:46:04] 2025-11-26 04:45:29,959 | INFO     | mean x: 1764094393.933226
[2025-11-25 23:46:04] 2025-11-26 04:45:29,959 | INFO     | mean y: 3360604.5937248594
[2025-11-25 23:46:04] 2025-11-26 04:45:29,959 | INFO     | intersect: -46840567955.94601
[2025-11-25 23:46:04] 2025-11-26 04:45:29,960 | INFO     | chi2: 32.569820949737824
[2025-11-25 23:46:04] 2025-11-26 04:45:29,984 | INFO     | sum of square deviations: 588342426666.5857
[2025-11-25 23:46:04] 2025-11-26 04:45:30,073 | INFO     | sum of deviations: 16357208906762.676
[2025-11-25 23:46:04] 2025-11-26 04:45:30,083 | INFO     | mean x: 1764094241.4369953
[2025-11-25 23:46:04] 2025-11-26 04:45:30,083 | INFO     | mean y: 3372198.4313408723
[2025-11-25 23:46:04] 2025-11-26 04:45:30,083 | INFO     | intersect: -49042314004.91041
[2025-11-25 23:46:04] 2025-11-26 04:45:30,084 | INFO     | chi2: 28.253195332048577
[2025-11-25 23:46:04] 2025-11-26 04:45:30,084 | INFO     | current chi2=28.253195332048577 (change=13.25345209711383 %)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,085 | INFO     | right removable region: 1237
[2025-11-25 23:46:04] 2025-11-26 04:45:30,086 | INFO     | sum of square deviations: 588341719066.5857
[2025-11-25 23:46:04] 2025-11-26 04:45:30,251 | INFO     | sum of deviations: 15212320079751.953
[2025-11-25 23:46:04] 2025-11-26 04:45:30,251 | INFO     | mean x: 1764094546.4369953
[2025-11-25 23:46:04] 2025-11-26 04:45:30,251 | INFO     | mean y: 3373400.223747981
[2025-11-25 23:46:04] 2025-11-26 04:45:30,251 | INFO     | intersect: -45609524719.4611
[2025-11-25 23:46:04] 2025-11-26 04:45:30,252 | INFO     | chi2: 28.305213484029366
[2025-11-25 23:46:04] 2025-11-26 04:45:30,253 | INFO     | current chi2=28.305213484029366 (change=13.093739361630686 %)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,253 | INFO     | left removable region: 10
[2025-11-25 23:46:04] 2025-11-26 04:45:30,254 | INFO     | sum of square deviations: 572797567205.3408
[2025-11-25 23:46:04] 2025-11-26 04:45:30,288 | INFO     | sum of deviations: 15295360284424.506
[2025-11-25 23:46:04] 2025-11-26 04:45:30,288 | INFO     | mean x: 1764094515.9453952
[2025-11-25 23:46:04] 2025-11-26 04:45:30,288 | INFO     | mean y: 3399160.7237163815
[2025-11-25 23:46:04] 2025-11-26 04:45:30,288 | INFO     | intersect: -47103052999.694405
[2025-11-25 23:46:04] 2025-11-26 04:45:30,289 | INFO     | chi2: 19.851372303956865
[2025-11-25 23:46:04] 2025-11-26 04:45:30,289 | INFO     | current memory leak: 26.70 B/s (using 1227 data points, chi2=19.85)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | could have reported an average CPU frequency of 3188 MHz (45 samples)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | ..............................
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . Timing measurements:
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . get job = 0 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . initial setup = 6 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . payload setup = 30 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . stage-in = 0 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . payload execution = 75802 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . stage-out = 11 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | . log creation = 4 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,291 | INFO     | ..............................
[2025-11-25 23:46:04] 2025-11-26 04:45:30,369 | INFO     | 
[2025-11-25 23:46:04] 2025-11-26 04:45:30,369 | INFO     | job summary report
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | --------------------------------------------------
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | PanDA job id: 6895336144
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | task id: 47556137
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | errors: (none)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | pilot state: finished 
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | transexitcode: 0
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | exeerrorcode: 0
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | exeerrordiag: 
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | exitcode: 0
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | exitmsg: OK
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | cpuconsumptiontime: 209626 s
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | nevents: 1000
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | neventsw: 0
[2025-11-25 23:46:04] 2025-11-26 04:45:30,370 | INFO     | pid: 1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | pgrp: 1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | corecount: 8
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | event service: False
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | sizes: {0: 2284083, 1: 2284338, 12: 2284338, 14: 2284628, 22: 2284656, 75838: 2345164, 75850: 2354219, 75864: 2354409}
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | --------------------------------------------------
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | 
[2025-11-25 23:46:04] 2025-11-26 04:45:30,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 23:46:04] 2025-11-26 04:45:30,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | job 6895336144 has completed (purged errors)
[2025-11-25 23:46:04] 2025-11-26 04:45:30,396 | INFO     | overall cleanup function is called
[2025-11-25 23:46:04] 2025-11-26 04:45:31,413 | INFO     | --- collectZombieJob: --- 10, [1827169]
[2025-11-25 23:46:04] 2025-11-26 04:45:31,417 | INFO     | zombie collector waiting for pid 1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:31,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:46:04] 2025-11-26 04:45:31,417 | INFO     | collected zombie processes
[2025-11-25 23:46:04] 2025-11-26 04:45:31,417 | INFO     | will attempt to kill all subprocesses of pid=1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:32,117 | INFO     | process IDs to be killed: [1827169] (in reverse order)
[2025-11-25 23:46:04] 2025-11-26 04:45:32,401 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:46:04] 2025-11-26 04:45:32,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:46:04] 2025-11-26 04:45:32,525 | INFO     | did not find any defunct processes belonging to 1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:32,626 | INFO     | did not find any defunct processes belonging to 1827169
[2025-11-25 23:46:04] 2025-11-26 04:45:32,651 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:46:04] 2025-11-26 04:45:32,651 | INFO     | ready for new job
[2025-11-25 23:46:04] 2025-11-26 04:45:32,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:46:04] 2025-11-26 04:45:32,673 | INFO     | ***************************************
[2025-11-25 23:46:04] 2025-11-26 04:45:32,673 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:46:04] 2025-11-26 04:45:32,673 | INFO     | ***************************************
[2025-11-25 23:46:04] 2025-11-26 04:45:32,673 | INFO     | 
[2025-11-25 23:46:04] 2025-11-26 04:45:32,698 | INFO     | architecture information:
[2025-11-25 23:46:04] 2025-11-26 04:45:32,710 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:46:04] 2025-11-26 04:45:32,817 | INFO     | cat /etc/os-release:
[2025-11-25 23:46:04] NAME="CentOS Linux"
[2025-11-25 23:46:04] VERSION="7 (Core)"
[2025-11-25 23:46:04] ID="centos"
[2025-11-25 23:46:04] ID_LIKE="rhel fedora"
[2025-11-25 23:46:04] VERSION_ID="7"
[2025-11-25 23:46:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:46:04] ANSI_COLOR="0;31"
[2025-11-25 23:46:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:46:04] HOME_URL="https://www.centos.org/"
[2025-11-25 23:46:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:46:04] 
[2025-11-25 23:46:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:46:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:46:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:46:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:46:04] 
[2025-11-25 23:46:04] 2025-11-26 04:45:32,817 | INFO     | ***************************************
[2025-11-25 23:46:04] 2025-11-26 04:45:33,321 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 23:46:04] 2025-11-26 04:45:33,508 | INFO     | sufficient remaining disk space (122251378688 B)
[2025-11-25 23:46:04] 2025-11-26 04:45:33,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:46:04] 2025-11-26 04:45:33,509 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:46:04] 2025-11-26 04:45:33,509 | INFO     | update_server=False
[2025-11-25 23:46:04] 2025-11-26 04:45:33,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:46:04] 2025-11-26 04:45:33,619 | INFO     | all payload control threads have been joined
[2025-11-25 23:46:04] 2025-11-26 04:45:33,929 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 23:46:04] 2025-11-26 04:45:33,929 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 23:46:04] 2025-11-26 04:45:33,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:46:04] 2025-11-26 04:45:33,930 | INFO     | will abort loop
[2025-11-25 23:46:04] 2025-11-26 04:45:34,163 | INFO     | all job control threads have been joined
[2025-11-25 23:46:04] 2025-11-26 04:45:34,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:46:04] 2025-11-26 04:45:34,516 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:34,567 | INFO     | all data control threads have been joined
[2025-11-25 23:46:04] 2025-11-26 04:45:34,625 | INFO     | [payload] control thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:34,745 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:34,935 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,097 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,098 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,098 | INFO     | [job] validate thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,191 | INFO     | [job] control thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:46:04] 2025-11-26 04:45:35,572 | INFO     | [data] control thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,586 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,587 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,698 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:35,896 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:36,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:46:04] 2025-11-26 04:45:36,378 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:36,406 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:38,876 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:46:04] 2025-11-26 04:45:40,139 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:46:04] 2025-11-26 04:45:42,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140133389363008)>', '<ExcThread(monitor, started 140132753594112)>']
[2025-11-25 23:46:04] 2025-11-26 04:45:47,210 | INFO     | all workflow threads have been joined
[2025-11-25 23:46:04] 2025-11-26 04:45:47,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:46:04] 2025-11-26 04:45:47,211 | INFO     | traces error code: 0
[2025-11-25 23:46:04] 2025-11-26 04:45:47,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:46:04] 2025-11-26 04:46:03,652 | INFO     | PID=1820221 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:46:04] 2025-11-26 04:46:03,652 | INFO     | .. there are 32 such processes running
[2025-11-25 23:46:04] 2025-11-26 04:46:03,653 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:46:04] 2025-11-26 04:46:03,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:46:04] 2025-11-26 04:46:03,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:46:04] 2025-11-26 04:46:03,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:46:04] 2025-11-26 04:46:03,653 | INFO     | [monitor] control thread has ended
[2025-11-25 23:46:04] 2025-11-26 04:46:03,823 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:46:04] 2025-11-26 04:46:03,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:46:04] 2025-11-26 04:46:03,838 [wrapper] pilotpid: 1820221
[2025-11-25 23:46:04] 2025-11-26 04:46:03,841 [wrapper] Pilot exit status: 0
[2025-11-25 23:46:04] 2025-11-26 04:46:03,855 [wrapper] pandaids: 6895336144
[2025-11-25 23:46:04] 2025-11-26 04:46:03,978 [wrapper] cleanup supervisor_pilot 3080055 1820222
[2025-11-25 23:46:04] 2025-11-26 04:46:03,982 [wrapper] Test setup, not cleaning
[2025-11-25 23:46:04] 2025-11-26 04:46:03,984 [wrapper] apfmon messages muted
[2025-11-25 23:46:04] 2025-11-26 04:46:03,987 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:46:04] 2025-11-26 04:46:03,990 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:46:04]  *** Error codes and diagnostics ***
[2025-11-25 23:46:04]     "exeErrorCode": 0,
[2025-11-25 23:46:04]     "exeErrorDiag": "",
[2025-11-25 23:46:04]     "pilotErrorCode": 0,
[2025-11-25 23:46:04]     "pilotErrorDiag": "",
[2025-11-25 23:46:04]  *** Listing of results directory ***
[2025-11-25 23:46:04] total 1324628
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-25 23:46:04] -rwx------. 1 boincer umatlas     36292 Nov 22 00:12 runpilot2-wrapper.sh
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas       100 Nov 25 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:46:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 02:39 run_atlas
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas       105 Nov 25 02:39 job.xml
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas 409396417 Nov 25 02:39 EVNT.47483658._000271.pool.root.1
[2025-11-25 23:46:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 02:39 shared
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 02:39 input.tar.gz
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:39 start_atlas.sh
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas         0 Nov 25 02:39 boinc_lockfile
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 02:39 pandaJob.out
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas        57 Nov 25 02:39 setup.sh.local
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas    991830 Nov 25 02:40 agis_schedconf.cvmfs.json
[2025-11-25 23:46:04] drwx------. 5 boincer umatlas      4096 Nov 25 02:40 pilot3
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas       533 Nov 25 23:06 boinc_task_state.xml
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas      6948 Nov 25 23:37 init_data.xml
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas 918582879 Nov 25 23:42 HITS.47556137._002680.pool.root.1
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas      1077 Nov 25 23:44 memory_monitor_summary.json
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:45 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas   2380706 Nov 25 23:45 log.47556137._002680.job.log.tgz.1
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas        95 Nov 25 23:45 pilot_heartbeat.json
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas      8644 Nov 25 23:45 heartbeat.json
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:46 boinc_mmap_file
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas        29 Nov 25 23:46 wrapper_checkpoint.txt
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas       823 Nov 25 23:46 pilotlog.txt
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas   9877930 Nov 25 23:46 log.47556137._002680.job.log.1
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas       353 Nov 25 23:46 output.list
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:46 runtime_log
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas  12277760 Nov 25 23:46 result.tar.gz
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 23:46 runtime_log.err
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas       666 Nov 25 23:46 ahNMDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyyJKDmJkep1m.diag
[2025-11-25 23:46:04] -rw-r--r--. 1 boincer umatlas     21829 Nov 25 23:46 stderr.txt
[2025-11-25 23:46:04] HITS file was successfully produced:
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas 918582879 Nov 25 23:42 shared/HITS.pool.root.1
[2025-11-25 23:46:04]  *** Contents of shared directory: ***
[2025-11-25 23:46:04] total 1309456
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas 409396417 Nov 25 02:39 ATLAS.root_0
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 02:39 input.tar.gz
[2025-11-25 23:46:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:39 start_atlas.sh
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas 918582879 Nov 25 23:42 HITS.pool.root.1
[2025-11-25 23:46:04] -rw-------. 1 boincer umatlas  12277760 Nov 25 23:46 result.tar.gz
23:46:05 (1814931): run_atlas exited; CPU time 209707.846262
23:46:05 (1814931): called boinc_finish(0)

</stderr_txt>
]]>

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