Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:16:44 (2788361): wrapper (7.7.26015): starting
17:16:44 (2788361): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 17:16:44] Arguments: --nthreads 3
[2025-11-27 17:16:44] Threads: 3
[2025-11-27 17:16:44] Checking for CVMFS
[2025-11-27 17:16:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:16:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:16:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:16:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:16:44] 2.9.2.0 1041335 12937 93080 153373 3 9 35731609 36864000 0 130560 1 4844106 99.942 639263 1042 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 17:16:44] CVMFS is ok
[2025-11-27 17:16:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:16:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 17:16:44] Further information can be found at the LHC@home message board.
[2025-11-27 17:16:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:16:44] Checking for apptainer binary...
[2025-11-27 17:16:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:16:44] Running /usr/bin/apptainer --version
[2025-11-27 17:16:44] apptainer version 1.4.1-1.1
[2025-11-27 17:16:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:16:44] thA335b
[2025-11-27 17:16:44] apptainer works
[2025-11-27 17:16:44] Set ATHENA_PROC_NUMBER=3
[2025-11-27 17:16:44] Set ATHENA_CORE_NUMBER=3
[2025-11-27 17:16:44] Starting ATLAS job with PandaID=6895417938
[2025-11-27 17:16:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:11:30]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:11:30] 2025-11-28 00:10:26,212 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:11:30] 2025-11-28 00:10:26,221 | INFO     | cat /etc/os-release:
[2025-11-28 01:11:30] NAME="CentOS Linux"
[2025-11-28 01:11:30] VERSION="7 (Core)"
[2025-11-28 01:11:30] ID="centos"
[2025-11-28 01:11:30] ID_LIKE="rhel fedora"
[2025-11-28 01:11:30] VERSION_ID="7"
[2025-11-28 01:11:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:11:30] ANSI_COLOR="0;31"
[2025-11-28 01:11:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:11:30] HOME_URL="https://www.centos.org/"
[2025-11-28 01:11:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:11:30] 
[2025-11-28 01:11:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:11:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:11:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:11:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:11:30] 
[2025-11-28 01:11:30] 2025-11-28 00:10:26,221 | INFO     | ***************************************
[2025-11-28 01:11:30] 2025-11-28 00:10:26,724 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 01:11:30] 2025-11-28 00:10:26,735 | INFO     | sufficient remaining disk space (366061027328 B)
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | INFO     | update_server=False
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:11:30] 2025-11-28 00:10:26,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:11:30] 2025-11-28 00:10:26,923 | INFO     | all payload control threads have been joined
[2025-11-28 01:11:30] 2025-11-28 00:10:27,018 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:11:30] 2025-11-28 00:10:27,019 | INFO     | aborting loop
[2025-11-28 01:11:30] 2025-11-28 00:10:27,174 | INFO     | all data control threads have been joined
[2025-11-28 01:11:30] 2025-11-28 00:10:27,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:11:30] 2025-11-28 00:10:27,711 | INFO     | all job control threads have been joined
[2025-11-28 01:11:30] 2025-11-28 00:10:27,741 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:27,742 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:27,929 | INFO     | [payload] control thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,024 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,029 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,180 | INFO     | [data] control thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,540 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,626 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,717 | INFO     | [job] control thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,742 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,851 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,860 | INFO     | [job] validate thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:28,883 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:29,075 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:31,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:11:30] 2025-11-28 00:10:56,923 | INFO     | PID=2792085 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 01:11:30] 2025-11-28 00:10:56,923 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:11:30] 2025-11-28 00:10:56,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:11:30] 2025-11-28 00:10:56,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:11:30] 2025-11-28 00:11:24,337 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:11:30] 2025-11-28 00:11:25,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316582336320)>', '<ExcThread(monitor, started 140316095010560)>']
[2025-11-28 01:11:30] 2025-11-28 00:11:26,079 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:11:30] 2025-11-28 00:11:26,079 | INFO     | [monitor] control thread has ended
[2025-11-28 01:11:30] 2025-11-28 00:11:30,688 | INFO     | all workflow threads have been joined
[2025-11-28 01:11:30] 2025-11-28 00:11:30,688 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:11:30] 2025-11-28 00:11:30,688 | INFO     | traces error code: 0
[2025-11-28 01:11:30] 2025-11-28 00:11:30,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:11:30] 2025-11-28 00:11:30,740 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:11:30] 2025-11-28 00:11:30,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:11:30] 2025-11-28 00:11:30,745 [wrapper] pilotpid: 2792085
[2025-11-28 01:11:30] 2025-11-28 00:11:30,748 [wrapper] Pilot exit status: 0
[2025-11-28 01:11:30] 2025-11-28 00:11:30,756 [wrapper] pandaids: 6895417938
[2025-11-28 01:11:30] 2025-11-28 00:11:30,774 [wrapper] cleanup supervisor_pilot 2848285 2792086
[2025-11-28 01:11:30] 2025-11-28 00:11:30,776 [wrapper] Test setup, not cleaning
[2025-11-28 01:11:30] 2025-11-28 00:11:30,779 [wrapper] apfmon messages muted
[2025-11-28 01:11:30] 2025-11-28 00:11:30,781 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:11:30] 2025-11-28 00:11:30,783 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:11:30]  *** Error codes and diagnostics ***
[2025-11-28 01:11:30]     "exeErrorCode": 0,
[2025-11-28 01:11:30]     "exeErrorDiag": "",
[2025-11-28 01:11:30]     "pilotErrorCode": 0,
[2025-11-28 01:11:30]     "pilotErrorDiag": "",
[2025-11-28 01:11:30]  *** Listing of results directory ***
[2025-11-28 01:11:30] total 1314408
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc    576529 Nov 24 08:53 pilot3.tar.gz
[2025-11-28 01:11:30] -rwx------ 1 boinc boinc     36292 Nov 24 09:42 runpilot2-wrapper.sh
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      5112 Nov 24 09:42 queuedata.json
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc       100 Nov 27 17:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:11:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 17:16 run_atlas
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc       105 Nov 27 17:16 job.xml
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc 409417118 Nov 27 17:16 EVNT.47483658._001278.pool.root.1
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc    590105 Nov 27 17:16 input.tar.gz
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:16 start_atlas.sh
[2025-11-28 01:11:30] drwxrwx--x 2 boinc boinc      4096 Nov 27 17:16 shared
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc         0 Nov 27 17:16 boinc_setup_complete
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      6446 Nov 27 17:16 init_data.xml
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc         0 Nov 27 17:16 boinc_lockfile
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      2785 Nov 27 17:16 pandaJob.out
[2025-11-28 01:11:30] -rw------- 1 boinc boinc    991572 Nov 27 17:16 agis_schedconf.cvmfs.json
[2025-11-28 01:11:30] drwx------ 5 boinc boinc      4096 Nov 27 17:16 pilot3
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc       531 Nov 28 01:07 boinc_task_state.xml
[2025-11-28 01:11:30] -rw------- 1 boinc boinc 922306116 Nov 28 01:09 HITS.47556149._002648.pool.root.1
[2025-11-28 01:11:30] -rw------- 1 boinc boinc        95 Nov 28 01:10 pilot_heartbeat.json
[2025-11-28 01:11:30] -rw------- 1 boinc boinc      1020 Nov 28 01:10 memory_monitor_summary.json
[2025-11-28 01:11:30] -rw------- 1 boinc boinc   1516240 Nov 28 01:10 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:11:30] -rw------- 1 boinc boinc   1162761 Nov 28 01:10 log.47556149._002648.job.log.tgz.1
[2025-11-28 01:11:30] -rw------- 1 boinc boinc      8557 Nov 28 01:10 heartbeat.json
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc        28 Nov 28 01:11 wrapper_checkpoint.txt
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      8192 Nov 28 01:11 boinc_mmap_file
[2025-11-28 01:11:30] -rw------- 1 boinc boinc      4752 Nov 28 01:11 pilotlog.txt
[2025-11-28 01:11:30] -rw------- 1 boinc boinc   3999343 Nov 28 01:11 log.47556149._002648.job.log.1
[2025-11-28 01:11:30] -rw------- 1 boinc boinc       353 Nov 28 01:11 output.list
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc       620 Nov 28 01:11 runtime_log
[2025-11-28 01:11:30] -rw------- 1 boinc boinc   5181440 Nov 28 01:11 result.tar.gz
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      8903 Nov 28 01:11 runtime_log.err
[2025-11-28 01:11:30] -rw------- 1 boinc boinc       666 Nov 28 01:11 pkdLDmFKhh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoyIKDmquilan.diag
[2025-11-28 01:11:30] -rw-r--r-- 1 boinc boinc      8886 Nov 28 01:11 stderr.txt
[2025-11-28 01:11:30] HITS file was successfully produced:
[2025-11-28 01:11:30] -rw------- 1 boinc boinc 922306116 Nov 28 01:09 shared/HITS.pool.root.1
[2025-11-28 01:11:30]  *** Contents of shared directory: ***
[2025-11-28 01:11:30] total 1306180
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc 409417118 Nov 27 17:16 ATLAS.root_0
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc    590105 Nov 27 17:16 input.tar.gz
[2025-11-28 01:11:30] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:16 start_atlas.sh
[2025-11-28 01:11:30] -rw------- 1 boinc boinc 922306116 Nov 28 01:09 HITS.pool.root.1
[2025-11-28 01:11:30] -rw------- 1 boinc boinc   5181440 Nov 28 01:11 result.tar.gz
01:11:32 (2788361): run_atlas exited; CPU time 83924.521394
01:11:32 (2788361): called boinc_finish(0)

</stderr_txt>
]]>

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