Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:37:28 (1115921): wrapper (7.7.26015): starting
10:37:28 (1115921): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 10:37:28] Arguments: --nthreads 3
[2025-11-27 10:37:28] Threads: 3
[2025-11-27 10:37:28] Checking for CVMFS
[2025-11-27 10:37:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:37:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:37:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:37:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:37:28] 2.9.2.0 5164 8308 93888 153358 3 81 19770621 36864001 0 130560 0 3083121 99.980 311165 3278 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 10:37:28] CVMFS is ok
[2025-11-27 10:37:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:37:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:37:28] Further information can be found at the LHC@home message board.
[2025-11-27 10:37:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:37:28] Checking for apptainer binary...
[2025-11-27 10:37:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:37:28] Running /usr/bin/apptainer --version
[2025-11-27 10:37:28] apptainer version 1.4.1-1.1
[2025-11-27 10:37:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:37:28] thA367a
[2025-11-27 10:37:28] apptainer works
[2025-11-27 10:37:28] Set ATHENA_PROC_NUMBER=3
[2025-11-27 10:37:28] Set ATHENA_CORE_NUMBER=3
[2025-11-27 10:37:28] Starting ATLAS job with PandaID=6895417887
[2025-11-27 10:37:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:44:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:44:20] 2025-11-27 17:43:47,138 | INFO     | monitor loop #2224: job 0:6895417887 is in state 'finished'
[2025-11-27 18:44:20] 2025-11-27 17:43:47,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,799 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:44:20] 2025-11-27 17:43:47,800 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3650.3605833333336
[2025-11-27 18:44:20] 2025-11-27 17:43:47,801 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895417887/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,801 | INFO     | extracted standard info from prmon json
[2025-11-27 18:44:20] 2025-11-27 17:43:47,801 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:44:20] 2025-11-27 17:43:47,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:44:20] 2025-11-27 17:43:47,804 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:44:20] 2025-11-27 17:43:47,804 | INFO     | sum of square deviations: 33865712179.5
[2025-11-27 18:44:20] 2025-11-27 17:43:47,806 | INFO     | sum of deviations: 195278036994.99997
[2025-11-27 18:44:20] 2025-11-27 17:43:47,806 | INFO     | mean x: 1764250821.5
[2025-11-27 18:44:20] 2025-11-27 17:43:47,806 | INFO     | mean y: 2202321.661087866
[2025-11-27 18:44:20] 2025-11-27 17:43:47,806 | INFO     | intersect: -10170902421.072914
[2025-11-27 18:44:20] 2025-11-27 17:43:47,806 | INFO     | chi2: 3.2318010596341034
[2025-11-27 18:44:20] 2025-11-27 17:43:47,807 | INFO     | sum of square deviations: 32814055252.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,808 | INFO     | sum of deviations: 248818482293.00003
[2025-11-27 18:44:20] 2025-11-27 17:43:47,808 | INFO     | mean x: 1764250669.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,808 | INFO     | mean y: 2210054.5285412264
[2025-11-27 18:44:20] 2025-11-27 17:43:47,808 | INFO     | intersect: -13375538305.855366
[2025-11-27 18:44:20] 2025-11-27 17:43:47,809 | INFO     | chi2: 2.282570723468415
[2025-11-27 18:44:20] 2025-11-27 17:43:47,809 | INFO     | current chi2=2.282570723468415 (change=29.3715584174342 %)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,809 | INFO     | sum of square deviations: 31784398737.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | sum of deviations: 244413523087.00003
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | mean x: 1764250516.5
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | mean y: 2209402.1324786325
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | intersect: -13564405084.233746
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | chi2: 2.2819493074932033
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | current chi2=2.2819493074932033 (change=0.02722439085118727 %)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | right removable region: 467
[2025-11-27 18:44:20] 2025-11-27 17:43:47,811 | INFO     | sum of square deviations: 32814055252.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,813 | INFO     | sum of deviations: 96583092912.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,813 | INFO     | mean x: 1764250974.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,813 | INFO     | mean y: 2216612.021141649
[2025-11-27 18:44:20] 2025-11-27 17:43:47,813 | INFO     | intersect: -5190583071.935717
[2025-11-27 18:44:20] 2025-11-27 17:43:47,814 | INFO     | chi2: 1.1779115084954266
[2025-11-27 18:44:20] 2025-11-27 17:43:47,814 | INFO     | current chi2=1.1779115084954266 (change=63.5524747111511 %)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,814 | INFO     | sum of square deviations: 31784398737.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | sum of deviations: 73753023194.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | mean x: 1764251126.5
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | mean y: 2219978.987179487
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | intersect: -4091576330.625708
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | chi2: 1.0146348882285048
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | current chi2=1.0146348882285048 (change=13.86153536062134 %)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | left removable region: 20
[2025-11-27 18:44:20] 2025-11-27 17:43:47,816 | INFO     | sum of square deviations: 27694837408.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | sum of deviations: 109215643668.00002
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | mean x: 1764251096.0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | mean y: 2229829.1275167787
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | intersect: -6955161406.032989
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | chi2: 0.0563489690318828
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | current memory leak: 3.94 B/s (using 447 data points, chi2=0.06)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | could have reported an average CPU frequency of 3869 MHz (20 samples)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | ..............................
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . Timing measurements:
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . get job = 0 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . initial setup = 1 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . payload setup = 2 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . stage-in = 0 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . payload execution = 29146 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . stage-out = 0 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | . log creation = 0 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,818 | INFO     | ..............................
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | 
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | job summary report
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | --------------------------------------------------
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | PanDA job id: 6895417887
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | task id: 47556161
[2025-11-27 18:44:20] 2025-11-27 17:43:47,873 | INFO     | errors: (none)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | pilot state: finished 
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | transexitcode: 0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | exeerrorcode: 0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | exeerrordiag: 
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | exitcode: 0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | exitmsg: OK
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | cpuconsumptiontime: 85926 s
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | nevents: 1000
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | neventsw: 0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | pid: 1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | pgrp: 1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | corecount: 3
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | event service: False
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | sizes: {0: 2284315, 2: 2284577, 10: 2284605, 29152: 2323651, 29153: 2323650, 29155: 2332706, 29158: 2332890, 29160: 2333136}
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | --------------------------------------------------
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | 
[2025-11-27 18:44:20] 2025-11-27 17:43:47,874 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | job 6895417887 has completed (purged errors)
[2025-11-27 18:44:20] 2025-11-27 17:43:47,888 | INFO     | overall cleanup function is called
[2025-11-27 18:44:20] 2025-11-27 17:43:48,897 | INFO     | --- collectZombieJob: --- 10, [1126086]
[2025-11-27 18:44:20] 2025-11-27 17:43:48,897 | INFO     | zombie collector waiting for pid 1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:48,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:44:20] 2025-11-27 17:43:48,897 | INFO     | collected zombie processes
[2025-11-27 18:44:20] 2025-11-27 17:43:48,897 | INFO     | will attempt to kill all subprocesses of pid=1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:48,939 | INFO     | process IDs to be killed: [1126086] (in reverse order)
[2025-11-27 18:44:20] 2025-11-27 17:43:48,962 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:44:20] 2025-11-27 17:43:48,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:44:20] 2025-11-27 17:43:48,964 | INFO     | did not find any defunct processes belonging to 1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:48,965 | INFO     | did not find any defunct processes belonging to 1126086
[2025-11-27 18:44:20] 2025-11-27 17:43:48,965 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:44:20] 2025-11-27 17:43:48,966 | INFO     | ready for new job
[2025-11-27 18:44:20] 2025-11-27 17:43:48,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:44:20] 2025-11-27 17:43:48,967 | INFO     | ***************************************
[2025-11-27 18:44:20] 2025-11-27 17:43:48,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:44:20] 2025-11-27 17:43:48,967 | INFO     | ***************************************
[2025-11-27 18:44:20] 2025-11-27 17:43:48,967 | INFO     | 
[2025-11-27 18:44:20] 2025-11-27 17:43:48,967 | INFO     | architecture information:
[2025-11-27 18:44:20] 2025-11-27 17:43:48,968 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:44:20] 2025-11-27 17:43:48,976 | INFO     | cat /etc/os-release:
[2025-11-27 18:44:20] NAME="CentOS Linux"
[2025-11-27 18:44:20] VERSION="7 (Core)"
[2025-11-27 18:44:20] ID="centos"
[2025-11-27 18:44:20] ID_LIKE="rhel fedora"
[2025-11-27 18:44:20] VERSION_ID="7"
[2025-11-27 18:44:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:44:20] ANSI_COLOR="0;31"
[2025-11-27 18:44:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:44:20] HOME_URL="https://www.centos.org/"
[2025-11-27 18:44:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:44:20] 
[2025-11-27 18:44:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:44:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:44:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:44:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:44:20] 
[2025-11-27 18:44:20] 2025-11-27 17:43:48,976 | INFO     | ***************************************
[2025-11-27 18:44:20] 2025-11-27 17:43:49,479 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | INFO     | sufficient remaining disk space (236957204480 B)
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | INFO     | update_server=False
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:44:20] 2025-11-27 17:43:49,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:44:20] 2025-11-27 17:43:49,642 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 18:44:20] 2025-11-27 17:43:49,642 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 18:44:20] 2025-11-27 17:43:49,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:44:20] 2025-11-27 17:43:49,643 | INFO     | will abort loop
[2025-11-27 18:44:20] 2025-11-27 17:43:49,960 | INFO     | all data control threads have been joined
[2025-11-27 18:44:20] 2025-11-27 17:43:50,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:44:20] 2025-11-27 17:43:50,499 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:50,499 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:50,648 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:50,741 | INFO     | all payload control threads have been joined
[2025-11-27 18:44:20] 2025-11-27 17:43:50,912 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:50,966 | INFO     | [data] control thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:50,993 | INFO     | all job control threads have been joined
[2025-11-27 18:44:20] 2025-11-27 17:43:51,349 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,357 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:44:20] 2025-11-27 17:43:51,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,747 | INFO     | [payload] control thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,876 | INFO     | [job] validate thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,882 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,971 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,990 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:51,999 | INFO     | [job] control thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:52,082 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:43:55,542 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:44:20] 2025-11-27 17:44:06,520 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:44:20] 2025-11-27 17:44:08,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139959340160832)>', '<ExcThread(monitor, started 139958597699328)>']
[2025-11-27 18:44:20] 2025-11-27 17:44:13,475 | INFO     | all workflow threads have been joined
[2025-11-27 18:44:20] 2025-11-27 17:44:13,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:44:20] 2025-11-27 17:44:13,475 | INFO     | traces error code: 0
[2025-11-27 18:44:20] 2025-11-27 17:44:13,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:44:20] 2025-11-27 17:44:19,978 | INFO     | PID=1119644 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:44:20] 2025-11-27 17:44:19,979 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:44:20] 2025-11-27 17:44:19,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:44:20] 2025-11-27 17:44:19,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:44:20] 2025-11-27 17:44:19,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:44:20] 2025-11-27 17:44:19,979 | INFO     | [monitor] control thread has ended
[2025-11-27 18:44:20] 2025-11-27 17:44:20,026 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:44:20] 2025-11-27 17:44:20,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:44:20] 2025-11-27 17:44:20,031 [wrapper] pilotpid: 1119644
[2025-11-27 18:44:20] 2025-11-27 17:44:20,033 [wrapper] Pilot exit status: 0
[2025-11-27 18:44:20] 2025-11-27 17:44:20,040 [wrapper] pandaids: 6895417887
[2025-11-27 18:44:20] 2025-11-27 17:44:20,056 [wrapper] cleanup supervisor_pilot 1175654 1119645
[2025-11-27 18:44:20] 2025-11-27 17:44:20,059 [wrapper] Test setup, not cleaning
[2025-11-27 18:44:20] 2025-11-27 17:44:20,061 [wrapper] apfmon messages muted
[2025-11-27 18:44:20] 2025-11-27 17:44:20,063 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:44:20] 2025-11-27 17:44:20,065 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:44:20]  *** Error codes and diagnostics ***
[2025-11-27 18:44:20]     "exeErrorCode": 0,
[2025-11-27 18:44:20]     "exeErrorDiag": "",
[2025-11-27 18:44:20]     "pilotErrorCode": 0,
[2025-11-27 18:44:20]     "pilotErrorDiag": "",
[2025-11-27 18:44:20]  *** Listing of results directory ***
[2025-11-27 18:44:20] total 1300684
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc    576529 Nov 24 08:53 pilot3.tar.gz
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc      5112 Nov 24 09:25 queuedata.json
[2025-11-27 18:44:20] -rwx------ 1 boinc boinc     36292 Nov 24 09:27 runpilot2-wrapper.sh
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc       100 Nov 27 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:44:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 10:37 run_atlas
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc       105 Nov 27 10:37 job.xml
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc 409299353 Nov 27 10:37 EVNT.47483658._002029.pool.root.1
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc    590104 Nov 27 10:37 input.tar.gz
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc     15847 Nov 27 10:37 start_atlas.sh
[2025-11-27 18:44:20] drwxrwx--x 2 boinc boinc      4096 Nov 27 10:37 shared
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:37 boinc_setup_complete
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc      6442 Nov 27 10:37 init_data.xml
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:37 boinc_lockfile
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc      2784 Nov 27 10:37 pandaJob.out
[2025-11-27 18:44:20] -rw------- 1 boinc boinc    991551 Nov 27 10:37 agis_schedconf.cvmfs.json
[2025-11-27 18:44:20] drwx------ 5 boinc boinc      4096 Nov 27 10:37 pilot3
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc       531 Nov 27 18:38 boinc_task_state.xml
[2025-11-27 18:44:20] -rw------- 1 boinc boinc 908132328 Nov 27 18:43 HITS.47556161._000127.pool.root.1
[2025-11-27 18:44:20] -rw------- 1 boinc boinc      1024 Nov 27 18:43 memory_monitor_summary.json
[2025-11-27 18:44:20] -rw------- 1 boinc boinc   1516240 Nov 27 18:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:44:20] -rw------- 1 boinc boinc   1167523 Nov 27 18:43 log.47556161._000127.job.log.tgz.1
[2025-11-27 18:44:20] -rw------- 1 boinc boinc      8565 Nov 27 18:43 heartbeat.json
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc      8192 Nov 27 18:44 boinc_mmap_file
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc        28 Nov 27 18:44 wrapper_checkpoint.txt
[2025-11-27 18:44:20] -rw------- 1 boinc boinc       747 Nov 27 18:44 pilotlog.txt
[2025-11-27 18:44:20] -rw------- 1 boinc boinc        95 Nov 27 18:44 pilot_heartbeat.json
[2025-11-27 18:44:20] -rw------- 1 boinc boinc   4109468 Nov 27 18:44 log.47556161._000127.job.log.1
[2025-11-27 18:44:20] -rw------- 1 boinc boinc       353 Nov 27 18:44 output.list
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc       620 Nov 27 18:44 runtime_log
[2025-11-27 18:44:20] -rw------- 1 boinc boinc   5294080 Nov 27 18:44 result.tar.gz
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc      8903 Nov 27 18:44 runtime_log.err
[2025-11-27 18:44:20] -rw------- 1 boinc boinc       666 Nov 27 18:44 HlaNDmF6gh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXyIKDmVO98Hn.diag
[2025-11-27 18:44:20] -rw-r--r-- 1 boinc boinc     21263 Nov 27 18:44 stderr.txt
[2025-11-27 18:44:20] HITS file was successfully produced:
[2025-11-27 18:44:20] -rw------- 1 boinc boinc 908132328 Nov 27 18:43 shared/HITS.pool.root.1
[2025-11-27 18:44:20]  *** Contents of shared directory: ***
[2025-11-27 18:44:20] total 1292332
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc 409299353 Nov 27 10:37 ATLAS.root_0
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc    590104 Nov 27 10:37 input.tar.gz
[2025-11-27 18:44:20] -rw-r--r-- 2 boinc boinc     15847 Nov 27 10:37 start_atlas.sh
[2025-11-27 18:44:20] -rw------- 1 boinc boinc 908132328 Nov 27 18:43 HITS.pool.root.1
[2025-11-27 18:44:20] -rw------- 1 boinc boinc   5294080 Nov 27 18:44 result.tar.gz
18:44:21 (1115921): run_atlas exited; CPU time 85954.183275
18:44:21 (1115921): called boinc_finish(0)

</stderr_txt>
]]>

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