Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:37:02 (1937856): wrapper (7.7.26015): starting
01:37:02 (1937856): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:37:02] Arguments: --nthreads 8
[2025-11-25 01:37:02] Threads: 8
[2025-11-25 01:37:02] Checking for CVMFS
[2025-11-25 01:37:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:37:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:37:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:37:03] 2.10.1.0 4440 250080 172560 153273 0 96 18196621 18432001 3769 130560 2 277490367 99.988 10121368 6487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-25 01:37:03] CVMFS is ok
[2025-11-25 01:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:37:03] Further information can be found at the LHC@home message board.
[2025-11-25 01:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:37:03] Checking for apptainer binary...
[2025-11-25 01:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:37:03] Running /usr/bin/apptainer --version
[2025-11-25 01:37:03] apptainer version 1.1.9-1.el8
[2025-11-25 01:37:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:37:03] c-16-31.aglt2.org
[2025-11-25 01:37:03] apptainer works
[2025-11-25 01:37:03] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:37:03] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:37:03] Starting ATLAS job with PandaID=6895401405
[2025-11-25 01:37:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:42:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:42:12] 2025-11-26 00:41:03,061 | INFO     | preparing for final server update for job 6895401405 in state='finished'
[2025-11-25 19:42:12] 2025-11-26 00:41:03,061 | INFO     | this job has now completed (state=finished)
[2025-11-25 19:42:12] 2025-11-26 00:41:03,062 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 19:42:12] 2025-11-26 00:41:03,062 | INFO     | log transfer has been attempted: DONE
[2025-11-25 19:42:12] 2025-11-26 00:41:03,062 | INFO     | job 6895401405 has finished - writing final server update
[2025-11-25 19:42:12] 2025-11-26 00:41:03,062 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 19:42:12] 2025-11-26 00:41:03,064 | INFO     | executing command: lscpu
[2025-11-25 19:42:12] 2025-11-26 00:41:03,114 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 19:42:12] 2025-11-26 00:41:03,116 | INFO     | time since job start (65028s) is within the limit (172800.0s)
[2025-11-25 19:42:12] 2025-11-26 00:41:04,846 | INFO     | monitor loop #4571: job 0:6895401405 is in state 'finished'
[2025-11-25 19:42:12] 2025-11-26 00:41:04,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:42:12] 2025-11-26 00:41:05,121 | INFO     | time since job start (65030s) is within the limit (172800.0s)
[2025-11-25 19:42:12] 2025-11-26 00:41:06,506 | INFO     | PID=1944645 has CPU usage=16.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 19:42:12] 2025-11-26 00:41:06,507 | INFO     | .. there are 5 such processes running
[2025-11-25 19:42:12] 2025-11-26 00:41:07,349 | INFO     | monitor loop #4572: job 0:6895401405 is in state 'finished'
[2025-11-25 19:42:12] 2025-11-26 00:41:07,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:42:12] 2025-11-26 00:41:07,507 | INFO     | time since job start (65032s) is within the limit (172800.0s)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,252 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 19:42:12] 2025-11-26 00:41:08,264 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2969.8658250000008
[2025-11-25 19:42:12] 2025-11-26 00:41:08,273 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895401405/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,274 | INFO     | extracted standard info from prmon json
[2025-11-25 19:42:12] 2025-11-26 00:41:08,274 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:42:12] 2025-11-26 00:41:08,275 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:42:12] 2025-11-26 00:41:08,303 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:42:12] 2025-11-26 00:41:08,305 | INFO     | sum of square deviations: 375617297362.11346
[2025-11-25 19:42:12] 2025-11-26 00:41:08,339 | INFO     | sum of deviations: 14348836413228.797
[2025-11-25 19:42:12] 2025-11-26 00:41:08,339 | INFO     | mean x: 1764085144.6313322
[2025-11-25 19:42:12] 2025-11-26 00:41:08,339 | INFO     | mean y: 3316408.1979362103
[2025-11-25 19:42:12] 2025-11-26 00:41:08,339 | INFO     | intersect: -67385936794.69567
[2025-11-25 19:42:12] 2025-11-26 00:41:08,341 | INFO     | chi2: 55.91887971224879
[2025-11-25 19:42:12] 2025-11-26 00:41:08,343 | INFO     | sum of square deviations: 370356618169.52686
[2025-11-25 19:42:12] 2025-11-26 00:41:08,376 | INFO     | sum of deviations: 14734517219733.34
[2025-11-25 19:42:12] 2025-11-26 00:41:08,376 | INFO     | mean x: 1764084992.131951
[2025-11-25 19:42:12] 2025-11-26 00:41:08,376 | INFO     | mean y: 3327581.7832233743
[2025-11-25 19:42:12] 2025-11-26 00:41:08,377 | INFO     | intersect: -70180218272.23846
[2025-11-25 19:42:12] 2025-11-26 00:41:08,378 | INFO     | chi2: 52.78089045502526
[2025-11-25 19:42:12] 2025-11-26 00:41:08,378 | INFO     | current chi2=52.78089045502526 (change=5.6116811949223795 %)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,378 | INFO     | right removable region: 1060
[2025-11-25 19:42:12] 2025-11-26 00:41:08,380 | INFO     | sum of square deviations: 370356532769.52655
[2025-11-25 19:42:12] 2025-11-26 00:41:08,413 | INFO     | sum of deviations: 13981943323251.115
[2025-11-25 19:42:12] 2025-11-26 00:41:08,414 | INFO     | mean x: 1764085297.131951
[2025-11-25 19:42:12] 2025-11-26 00:41:08,414 | INFO     | mean y: 3327033.442035815
[2025-11-25 19:42:12] 2025-11-26 00:41:08,414 | INFO     | intersect: -66595580936.216545
[2025-11-25 19:42:12] 2025-11-26 00:41:08,415 | INFO     | chi2: 53.49044374741785
[2025-11-25 19:42:12] 2025-11-26 00:41:08,416 | INFO     | current chi2=53.49044374741785 (change=4.34278364897035 %)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,416 | INFO     | left removable region: 10
[2025-11-25 19:42:12] 2025-11-26 00:41:08,417 | INFO     | sum of square deviations: 358956336861.8333
[2025-11-25 19:42:12] 2025-11-26 00:41:08,450 | INFO     | sum of deviations: 14244410101553.709
[2025-11-25 19:42:12] 2025-11-26 00:41:08,450 | INFO     | mean x: 1764085266.6333334
[2025-11-25 19:42:12] 2025-11-26 00:41:08,450 | INFO     | mean y: 3342589.734285714
[2025-11-25 19:42:12] 2025-11-26 00:41:08,451 | INFO     | intersect: -70000586611.56613
[2025-11-25 19:42:12] 2025-11-26 00:41:08,452 | INFO     | chi2: 50.17128024623738
[2025-11-25 19:42:12] 2025-11-26 00:41:08,452 | INFO     | current memory leak: 39.68 B/s (using 1050 data points, chi2=50.17)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,453 | INFO     | could have reported an average CPU frequency of 2906 MHz (39 samples)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | ..............................
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | . Timing measurements:
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | . get job = 0 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | . initial setup = 2 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | . payload setup = 5 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,454 | INFO     | . stage-in = 0 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,455 | INFO     | . payload execution = 64995 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,455 | INFO     | . stage-out = 3 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,455 | INFO     | . log creation = 0 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,455 | INFO     | ..............................
[2025-11-25 19:42:12] 2025-11-26 00:41:08,620 | INFO     | 
[2025-11-25 19:42:12] 2025-11-26 00:41:08,620 | INFO     | job summary report
[2025-11-25 19:42:12] 2025-11-26 00:41:08,620 | INFO     | --------------------------------------------------
[2025-11-25 19:42:12] 2025-11-26 00:41:08,620 | INFO     | PanDA job id: 6895401405
[2025-11-25 19:42:12] 2025-11-26 00:41:08,620 | INFO     | task id: 47556149
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | errors: (none)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | pilot state: finished 
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | transexitcode: 0
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | exeerrorcode: 0
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | exeerrordiag: 
[2025-11-25 19:42:12] 2025-11-26 00:41:08,621 | INFO     | exitcode: 0
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | exitmsg: OK
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | cpuconsumptiontime: 491560 s
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | nevents: 1000
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | neventsw: 0
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | pid: 1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:08,622 | INFO     | pgrp: 1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | corecount: 8
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | event service: False
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | sizes: {0: 2284196, 1: 2284338, 5: 2284600, 12: 2284656, 65005: 2339706, 65009: 2348705, 65010: 2348889, 65017: 2349135}
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | --------------------------------------------------
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | 
[2025-11-25 19:42:12] 2025-11-26 00:41:08,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:42:12] 2025-11-26 00:41:08,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:42:12] 2025-11-26 00:41:08,646 | INFO     | job 6895401405 has completed (purged errors)
[2025-11-25 19:42:12] 2025-11-26 00:41:08,647 | INFO     | overall cleanup function is called
[2025-11-25 19:42:12] 2025-11-26 00:41:09,664 | INFO     | --- collectZombieJob: --- 10, [1960526]
[2025-11-25 19:42:12] 2025-11-26 00:41:09,664 | INFO     | zombie collector waiting for pid 1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:09,664 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:42:12] 2025-11-26 00:41:09,664 | INFO     | collected zombie processes
[2025-11-25 19:42:12] 2025-11-26 00:41:09,665 | INFO     | will attempt to kill all subprocesses of pid=1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:09,976 | INFO     | process IDs to be killed: [1960526] (in reverse order)
[2025-11-25 19:42:12] 2025-11-26 00:41:10,072 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:42:12] 2025-11-26 00:41:10,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:42:12] 2025-11-26 00:41:10,090 | INFO     | did not find any defunct processes belonging to 1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:10,103 | INFO     | did not find any defunct processes belonging to 1960526
[2025-11-25 19:42:12] 2025-11-26 00:41:10,105 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:42:12] 2025-11-26 00:41:10,105 | INFO     | ready for new job
[2025-11-25 19:42:12] 2025-11-26 00:41:10,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:42:12] 2025-11-26 00:41:10,111 | INFO     | ***************************************
[2025-11-25 19:42:12] 2025-11-26 00:41:10,111 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:42:12] 2025-11-26 00:41:10,111 | INFO     | ***************************************
[2025-11-25 19:42:12] 2025-11-26 00:41:10,111 | INFO     | 
[2025-11-25 19:42:12] 2025-11-26 00:41:10,125 | INFO     | architecture information:
[2025-11-25 19:42:12] 2025-11-26 00:41:10,125 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:42:12] 2025-11-26 00:41:10,138 | INFO     | cat /etc/os-release:
[2025-11-25 19:42:12] NAME="CentOS Linux"
[2025-11-25 19:42:12] VERSION="7 (Core)"
[2025-11-25 19:42:12] ID="centos"
[2025-11-25 19:42:12] ID_LIKE="rhel fedora"
[2025-11-25 19:42:12] VERSION_ID="7"
[2025-11-25 19:42:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:42:12] ANSI_COLOR="0;31"
[2025-11-25 19:42:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:42:12] HOME_URL="https://www.centos.org/"
[2025-11-25 19:42:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:42:12] 
[2025-11-25 19:42:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:42:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:42:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:42:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:42:12] 
[2025-11-25 19:42:12] 2025-11-26 00:41:10,138 | INFO     | ***************************************
[2025-11-25 19:42:12] 2025-11-26 00:41:10,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:42:12] 2025-11-26 00:41:10,656 | INFO     | sufficient remaining disk space (99900981248 B)
[2025-11-25 19:42:12] 2025-11-26 00:41:10,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:42:12] 2025-11-26 00:41:10,657 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:42:12] 2025-11-26 00:41:10,657 | INFO     | update_server=False
[2025-11-25 19:42:12] 2025-11-26 00:41:10,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:42:12] 2025-11-26 00:41:10,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:42:12] 2025-11-26 00:41:10,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:42:12] 2025-11-26 00:41:10,863 | INFO     | aborting loop
[2025-11-25 19:42:12] 2025-11-26 00:41:10,925 | INFO     | all job control threads have been joined
[2025-11-25 19:42:12] 2025-11-26 00:41:10,960 | INFO     | all payload control threads have been joined
[2025-11-25 19:42:12] 2025-11-26 00:41:11,125 | INFO     | all data control threads have been joined
[2025-11-25 19:42:12] 2025-11-26 00:41:11,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:42:12] 2025-11-26 00:41:11,663 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:11,791 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:11,868 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:11,930 | INFO     | [job] control thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:11,965 | INFO     | [payload] control thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,087 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,130 | INFO     | [data] control thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,139 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,232 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,472 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,669 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:12,819 | INFO     | [job] validate thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:13,034 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:13,099 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:13,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:42:12] 2025-11-26 00:41:14,619 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:15,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:42:12] 2025-11-26 00:41:40,971 | INFO     | PID=1944645 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:42:12] 2025-11-26 00:41:40,971 | INFO     | .. there are 5 such processes running
[2025-11-25 19:42:12] 2025-11-26 00:41:40,972 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:42:12] 2025-11-26 00:41:40,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:42:12] 2025-11-26 00:41:40,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:42:12] 2025-11-26 00:42:06,027 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:42:12] 2025-11-26 00:42:06,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551434266432)>', '<ExcThread(monitor, started 140550825031424)>']
[2025-11-25 19:42:12] 2025-11-26 00:42:07,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:42:12] 2025-11-26 00:42:07,093 | INFO     | [monitor] control thread has ended
[2025-11-25 19:42:12] 2025-11-26 00:42:11,924 | INFO     | all workflow threads have been joined
[2025-11-25 19:42:12] 2025-11-26 00:42:11,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:42:12] 2025-11-26 00:42:11,924 | INFO     | traces error code: 0
[2025-11-25 19:42:12] 2025-11-26 00:42:11,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:42:12] 2025-11-26 00:42:12,040 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:42:12] 2025-11-26 00:42:12,042 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:42:12] 2025-11-26 00:42:12,044 [wrapper] pilotpid: 1944645
[2025-11-25 19:42:12] 2025-11-26 00:42:12,046 [wrapper] Pilot exit status: 0
[2025-11-25 19:42:12] 2025-11-26 00:42:12,054 [wrapper] pandaids: 6895401405
[2025-11-25 19:42:12] 2025-11-26 00:42:12,115 [wrapper] cleanup supervisor_pilot 3944927 1944646
[2025-11-25 19:42:12] 2025-11-26 00:42:12,118 [wrapper] Test setup, not cleaning
[2025-11-25 19:42:12] 2025-11-26 00:42:12,120 [wrapper] apfmon messages muted
[2025-11-25 19:42:12] 2025-11-26 00:42:12,122 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:42:12] 2025-11-26 00:42:12,124 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:42:12]  *** Error codes and diagnostics ***
[2025-11-25 19:42:12]     "exeErrorCode": 0,
[2025-11-25 19:42:12]     "exeErrorDiag": "",
[2025-11-25 19:42:12]     "pilotErrorCode": 0,
[2025-11-25 19:42:12]     "pilotErrorDiag": "",
[2025-11-25 19:42:12]  *** Listing of results directory ***
[2025-11-25 19:42:12] total 1336588
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 01:55 pilot3.tar.gz
[2025-11-25 19:42:12] -rwx------ 1 boincer umatlas     36292 Nov 24 02:29 runpilot2-wrapper.sh
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 02:29 queuedata.json
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:42:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:37 run_atlas
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:37 job.xml
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas 412299287 Nov 25 01:37 EVNT.47483658._001261.pool.root.1
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:37 start_atlas.sh
[2025-11-25 19:42:12] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:37 shared
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 01:37 input.tar.gz
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:37 boinc_lockfile
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 01:37 pandaJob.out
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas        57 Nov 25 01:37 setup.sh.local
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas    991801 Nov 25 01:37 agis_schedconf.cvmfs.json
[2025-11-25 19:42:12] drwx------ 5 boincer umatlas      4096 Nov 25 01:37 pilot3
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:28 boinc_task_state.xml
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas      6014 Nov 25 19:36 init_data.xml
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas 930034404 Nov 25 19:40 HITS.47556149._002477.pool.root.1
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas        95 Nov 25 19:40 pilot_heartbeat.json
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas      1064 Nov 25 19:40 memory_monitor_summary.json
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas   1516240 Nov 25 19:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas   2250337 Nov 25 19:40 log.47556149._002477.job.log.tgz.1
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas      8646 Nov 25 19:41 heartbeat.json
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:42 wrapper_checkpoint.txt
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:42 boinc_mmap_file
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas      4823 Nov 25 19:42 pilotlog.txt
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas   8953937 Nov 25 19:42 log.47556149._002477.job.log.1
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas       353 Nov 25 19:42 output.list
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:42 runtime_log
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas  11223040 Nov 25 19:42 result.tar.gz
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 19:42 runtime_log.err
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas       665 Nov 25 19:42 I2XLDmhBgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIWLKDmVaCcQm.diag
[2025-11-25 19:42:12] -rw-r--r-- 1 boincer umatlas     21825 Nov 25 19:42 stderr.txt
[2025-11-25 19:42:12] HITS file was successfully produced:
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas 930034404 Nov 25 19:40 shared/HITS.pool.root.1
[2025-11-25 19:42:12]  *** Contents of shared directory: ***
[2025-11-25 19:42:12] total 1322440
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas 412299287 Nov 25 01:37 ATLAS.root_0
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:37 start_atlas.sh
[2025-11-25 19:42:12] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 01:37 input.tar.gz
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas 930034404 Nov 25 19:40 HITS.pool.root.1
[2025-11-25 19:42:12] -rw------- 1 boincer umatlas  11223040 Nov 25 19:42 result.tar.gz
19:42:14 (1937856): run_atlas exited; CPU time 492611.803066
19:42:14 (1937856): called boinc_finish(0)

</stderr_txt>
]]>

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