Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:13:56 (4316): wrapper (7.7.26015): starting
20:13:56 (4316): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:13:56] Arguments: --nthreads 8
[2025-11-26 20:13:56] Threads: 8
[2025-11-26 20:13:56] Checking for CVMFS
[2025-11-26 20:13:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:13:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:13:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:13:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:13:58] 2.11.2.0 23292 285629 135200 153332 1 60 22728051 25165825 1288 130560 11 173832525 99.905 78211370 2824 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 20:13:58] CVMFS is ok
[2025-11-26 20:13:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:13:58] Checking for apptainer binary...
[2025-11-26 20:13:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:13:58] Running /usr/bin/apptainer --version
[2025-11-26 20:13:59] apptainer version 1.3.2-1.el7
[2025-11-26 20:13:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:14:16] cg-vwn268.simple-grid.lan
[2025-11-26 20:14:16] apptainer works
[2025-11-26 20:14:16] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:14:16] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:14:16] Starting ATLAS job with PandaID=6895417881
[2025-11-26 20:14:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:15:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:15:44] 2025-11-27 18:14:34,409 | INFO     | monitor loop #5557: job 0:6895417881 is in state 'finished'
[2025-11-27 19:15:44] 2025-11-27 18:14:34,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:15:44] 2025-11-27 18:14:35,314 | INFO     | time since job start (82584s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:36,920 | INFO     | monitor loop #5558: job 0:6895417881 is in state 'finished'
[2025-11-27 19:15:44] 2025-11-27 18:14:36,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:15:44] 2025-11-27 18:14:37,326 | INFO     | time since job start (82586s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:39,334 | INFO     | time since job start (82588s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:39,425 | INFO     | monitor loop #5559: job 0:6895417881 is in state 'finished'
[2025-11-27 19:15:44] 2025-11-27 18:14:39,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:15:44] 2025-11-27 18:14:41,340 | INFO     | time since job start (82590s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:41,930 | INFO     | monitor loop #5560: job 0:6895417881 is in state 'finished'
[2025-11-27 19:15:44] 2025-11-27 18:14:41,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:15:44] 2025-11-27 18:14:43,346 | INFO     | time since job start (82592s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:44,435 | INFO     | monitor loop #5561: job 0:6895417881 is in state 'finished'
[2025-11-27 19:15:44] 2025-11-27 18:14:44,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:15:44] 2025-11-27 18:14:44,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:15:44] 2025-11-27 18:14:44,781 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 19:15:44] 2025-11-27 18:14:44,783 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895417881/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:15:44] 2025-11-27 18:14:44,784 | INFO     | extracted standard info from prmon json
[2025-11-27 19:15:44] 2025-11-27 18:14:44,784 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:15:44] 2025-11-27 18:14:44,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:15:44] 2025-11-27 18:14:44,810 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:15:44] 2025-11-27 18:14:44,812 | INFO     | sum of square deviations: 752792701248.6606
[2025-11-27 19:15:44] 2025-11-27 18:14:44,869 | INFO     | sum of deviations: 2888674183732.056
[2025-11-27 19:15:44] 2025-11-27 18:14:44,869 | INFO     | mean x: 1764226177.5498512
[2025-11-27 19:15:44] 2025-11-27 18:14:44,869 | INFO     | mean y: 2848472.3125
[2025-11-27 19:15:44] 2025-11-27 18:14:44,869 | INFO     | intersect: -6766976215.014208
[2025-11-27 19:15:44] 2025-11-27 18:14:44,871 | INFO     | chi2: 18.650349828340648
[2025-11-27 19:15:44] 2025-11-27 18:14:44,873 | INFO     | sum of square deviations: 744422630468.1278
[2025-11-27 19:15:44] 2025-11-27 18:14:44,937 | INFO     | sum of deviations: 3346564361614.1733
[2025-11-27 19:15:44] 2025-11-27 18:14:44,938 | INFO     | mean x: 1764226025.0537715
[2025-11-27 19:15:44] 2025-11-27 18:14:44,938 | INFO     | mean y: 2856814.5392083647
[2025-11-27 19:15:44] 2025-11-27 18:14:44,938 | INFO     | intersect: -7928250730.59871
[2025-11-27 19:15:44] 2025-11-27 18:14:44,940 | INFO     | chi2: 15.295610977989053
[2025-11-27 19:15:44] 2025-11-27 18:14:44,940 | INFO     | current chi2=15.295610977989053 (change=17.987538471014684 %)
[2025-11-27 19:15:44] 2025-11-27 18:14:44,940 | INFO     | right removable region: 1338
[2025-11-27 19:15:44] 2025-11-27 18:14:44,942 | INFO     | sum of square deviations: 744421769758.1278
[2025-11-27 19:15:44] 2025-11-27 18:14:44,997 | INFO     | sum of deviations: 2341706028189.0444
[2025-11-27 19:15:44] 2025-11-27 18:14:44,997 | INFO     | mean x: 1764226330.0537715
[2025-11-27 19:15:44] 2025-11-27 18:14:44,997 | INFO     | mean y: 2858436.0410754294
[2025-11-27 19:15:44] 2025-11-27 18:14:44,997 | INFO     | intersect: -5546817298.884118
[2025-11-27 19:15:44] 2025-11-27 18:14:44,999 | INFO     | chi2: 14.267273759471353
[2025-11-27 19:15:44] 2025-11-27 18:14:44,999 | INFO     | current chi2=14.267273759471353 (change=23.50130753155564 %)
[2025-11-27 19:15:44] 2025-11-27 18:14:44,999 | INFO     | left removable region: 10
[2025-11-27 19:15:44] 2025-11-27 18:14:45,001 | INFO     | sum of square deviations: 726225652318.8125
[2025-11-27 19:15:44] 2025-11-27 18:14:45,159 | INFO     | sum of deviations: 2448975972970.688
[2025-11-27 19:15:44] 2025-11-27 18:14:45,159 | INFO     | mean x: 1764226299.5625
[2025-11-27 19:15:44] 2025-11-27 18:14:45,159 | INFO     | mean y: 2877447.443524096
[2025-11-27 19:15:44] 2025-11-27 18:14:45,159 | INFO     | intersect: -5946441204.019964
[2025-11-27 19:15:44] 2025-11-27 18:14:45,161 | INFO     | chi2: 6.898798303093031
[2025-11-27 19:15:44] 2025-11-27 18:14:45,161 | INFO     | current memory leak: 3.37 B/s (using 1328 data points, chi2=6.90)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,163 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,163 | INFO     | ..............................
[2025-11-27 19:15:44] 2025-11-27 18:14:45,163 | INFO     | . Timing measurements:
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . get job = 0 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . initial setup = 9 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . payload setup = 161 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . stage-in = 0 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . payload execution = 82135 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . stage-out = 5 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | . log creation = 2 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,164 | INFO     | ..............................
[2025-11-27 19:15:44] 2025-11-27 18:14:45,353 | INFO     | time since job start (82594s) is within the limit (172800.0s)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,536 | INFO     | 
[2025-11-27 19:15:44] 2025-11-27 18:14:45,536 | INFO     | job summary report
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | --------------------------------------------------
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | PanDA job id: 6895417881
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | task id: 47556161
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | errors: (none)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | pilot state: finished 
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | transexitcode: 0
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | exeerrorcode: 0
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | exeerrordiag: 
[2025-11-27 19:15:44] 2025-11-27 18:14:45,537 | INFO     | exitcode: 0
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | exitmsg: OK
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | cpuconsumptiontime: 311024 s
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | nevents: 1000
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | neventsw: 0
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | pid: 14643
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | pgrp: 14643
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | corecount: 8
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | event service: False
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | sizes: {0: 2283478, 1: 2284163, 2: 2284362, 13: 2284362, 23: 2284418, 34: 2284446, 45: 2284602, 56: 2284630, 66: 2284658, 77: 2284686, 88: 2284742, 92: 2285312, 98
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | --------------------------------------------------
[2025-11-27 19:15:44] 2025-11-27 18:14:45,538 | INFO     | 
[2025-11-27 19:15:44] 2025-11-27 18:14:45,539 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-27 19:15:44] 2025-11-27 18:14:45,577 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,577 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | job 6895417881 has completed (purged errors)
[2025-11-27 19:15:44] 2025-11-27 18:14:45,579 | INFO     | overall cleanup function is called
[2025-11-27 19:15:44] 2025-11-27 18:14:46,595 | INFO     | --- collectZombieJob: --- 10, [14643]
[2025-11-27 19:15:44] 2025-11-27 18:14:46,595 | INFO     | zombie collector waiting for pid 14643
[2025-11-27 19:15:44] 2025-11-27 18:14:46,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:15:44] 2025-11-27 18:14:46,596 | INFO     | collected zombie processes
[2025-11-27 19:15:44] 2025-11-27 18:14:46,596 | INFO     | will attempt to kill all subprocesses of pid=14643
[2025-11-27 19:15:44] 2025-11-27 18:14:46,712 | INFO     | process IDs to be killed: [14643] (in reverse order)
[2025-11-27 19:15:44] 2025-11-27 18:14:47,559 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:15:44] 2025-11-27 18:14:47,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:15:44] 2025-11-27 18:14:47,563 | INFO     | did not find any defunct processes belonging to 14643
[2025-11-27 19:15:44] 2025-11-27 18:14:47,565 | INFO     | did not find any defunct processes belonging to 14643
[2025-11-27 19:15:44] 2025-11-27 18:14:47,576 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:15:44] 2025-11-27 18:14:47,577 | INFO     | ready for new job
[2025-11-27 19:15:44] 2025-11-27 18:14:47,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:15:44] 2025-11-27 18:14:47,581 | INFO     | ***************************************
[2025-11-27 19:15:44] 2025-11-27 18:14:47,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:15:44] 2025-11-27 18:14:47,582 | INFO     | ***************************************
[2025-11-27 19:15:44] 2025-11-27 18:14:47,582 | INFO     | 
[2025-11-27 19:15:44] 2025-11-27 18:14:47,582 | INFO     | pilot is running in a VM
[2025-11-27 19:15:44] 2025-11-27 18:14:47,583 | INFO     | architecture information:
[2025-11-27 19:15:44] 2025-11-27 18:14:47,589 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:15:44] 2025-11-27 18:14:47,713 | INFO     | cat /etc/os-release:
[2025-11-27 19:15:44] NAME="CentOS Linux"
[2025-11-27 19:15:44] VERSION="7 (Core)"
[2025-11-27 19:15:44] ID="centos"
[2025-11-27 19:15:44] ID_LIKE="rhel fedora"
[2025-11-27 19:15:44] VERSION_ID="7"
[2025-11-27 19:15:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:15:44] ANSI_COLOR="0;31"
[2025-11-27 19:15:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:15:44] HOME_URL="https://www.centos.org/"
[2025-11-27 19:15:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:15:44] 
[2025-11-27 19:15:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:15:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:15:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:15:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:15:44] 
[2025-11-27 19:15:44] 2025-11-27 18:14:47,713 | INFO     | ***************************************
[2025-11-27 19:15:44] 2025-11-27 18:14:48,216 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-27 19:15:44] 2025-11-27 18:14:48,482 | INFO     | sufficient remaining disk space (495500394496 B)
[2025-11-27 19:15:44] 2025-11-27 18:14:48,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:15:44] 2025-11-27 18:14:48,482 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:15:44] 2025-11-27 18:14:48,482 | INFO     | update_server=False
[2025-11-27 19:15:44] 2025-11-27 18:14:48,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:15:44] 2025-11-27 18:14:48,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:15:44] 2025-11-27 18:14:48,483 | INFO     | aborting loop
[2025-11-27 19:15:44] 2025-11-27 18:14:48,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:15:44] 2025-11-27 18:14:49,397 | INFO     | all data control threads have been joined
[2025-11-27 19:15:44] 2025-11-27 18:14:49,488 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:49,489 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:49,517 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:49,706 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:49,749 | INFO     | all payload control threads have been joined
[2025-11-27 19:15:44] 2025-11-27 18:14:50,134 | INFO     | all job control threads have been joined
[2025-11-27 19:15:44] 2025-11-27 18:14:50,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:15:44] 2025-11-27 18:14:50,343 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,403 | INFO     | [data] control thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,493 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,643 | INFO     | [job] validate thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,660 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,755 | INFO     | [payload] control thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,861 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:50,964 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:51,139 | INFO     | [job] control thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:51,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:15:44] 2025-11-27 18:14:51,334 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:14:55,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:15:44] 2025-11-27 18:15:18,553 | INFO     | PID=8091 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 19:15:44] 2025-11-27 18:15:18,554 | INFO     | .. there are 9 such processes running
[2025-11-27 19:15:44] 2025-11-27 18:15:18,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:15:44] 2025-11-27 18:15:18,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:15:44] 2025-11-27 18:15:18,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:15:44] 2025-11-27 18:15:34,731 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:15:44] 2025-11-27 18:15:35,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543733483328)>', '<ExcThread(monitor, started 140543141082880)>']
[2025-11-27 19:15:44] 2025-11-27 18:15:35,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:15:44] 2025-11-27 18:15:35,655 | INFO     | [monitor] control thread has ended
[2025-11-27 19:15:44] 2025-11-27 18:15:40,207 | INFO     | all workflow threads have been joined
[2025-11-27 19:15:44] 2025-11-27 18:15:40,207 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:15:44] 2025-11-27 18:15:40,208 | INFO     | traces error code: 0
[2025-11-27 19:15:44] 2025-11-27 18:15:40,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:15:44] 2025-11-27 18:15:40,704 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:15:44] 2025-11-27 18:15:40,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:15:44] 2025-11-27 18:15:40,860 [wrapper] pilotpid: 8091
[2025-11-27 19:15:44] 2025-11-27 18:15:40,963 [wrapper] Pilot exit status: 0
[2025-11-27 19:15:44] 2025-11-27 18:15:41,296 [wrapper] pandaids: 6895417881
[2025-11-27 19:15:44] 2025-11-27 18:15:41,890 [wrapper] cleanup supervisor_pilot 14812 8092
[2025-11-27 19:15:44] 2025-11-27 18:15:41,975 [wrapper] Test setup, not cleaning
[2025-11-27 19:15:44] 2025-11-27 18:15:42,098 [wrapper] apfmon messages muted
[2025-11-27 19:15:44] 2025-11-27 18:15:42,204 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:15:44] 2025-11-27 18:15:42,304 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:15:44]  *** Error codes and diagnostics ***
[2025-11-27 19:15:44]     "exeErrorCode": 0,
[2025-11-27 19:15:44]     "exeErrorDiag": "",
[2025-11-27 19:15:44]     "pilotErrorCode": 0,
[2025-11-27 19:15:44]     "pilotErrorDiag": "",
[2025-11-27 19:15:44]  *** Listing of results directory ***
[2025-11-27 19:15:44] total 1323516
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc    576529 Nov 24 08:53 pilot3.tar.gz
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc      5112 Nov 24 09:24 queuedata.json
[2025-11-27 19:15:44] -rwx------. 1 boinc boinc     36292 Nov 24 09:24 runpilot2-wrapper.sh
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc       100 Nov 26 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:15:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 20:13 run_atlas
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc       105 Nov 26 20:13 job.xml
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc      6392 Nov 26 20:13 init_data.xml
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc 409299353 Nov 26 20:13 EVNT.47483658._002029.pool.root.1
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc     15847 Nov 26 20:13 start_atlas.sh
[2025-11-27 19:15:44] drwxrwx--x. 2 boinc boinc        68 Nov 26 20:13 shared
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc    590102 Nov 26 20:13 input.tar.gz
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc         0 Nov 26 20:13 boinc_lockfile
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc      2781 Nov 26 20:14 pandaJob.out
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc    991522 Nov 26 20:18 agis_schedconf.cvmfs.json
[2025-11-27 19:15:44] drwx------. 5 boinc boinc      4096 Nov 26 20:18 pilot3
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc       533 Nov 27 18:52 boinc_task_state.xml
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc 915224339 Nov 27 19:11 HITS.47556161._000121.pool.root.1
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc      1028 Nov 27 19:12 memory_monitor_summary.json
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc   1516240 Nov 27 19:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc   2435465 Nov 27 19:13 log.47556161._000121.job.log.tgz.1
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc        95 Nov 27 19:14 pilot_heartbeat.json
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc      8634 Nov 27 19:14 heartbeat.json
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc      4883 Nov 27 19:15 pilotlog.txt
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc        29 Nov 27 19:15 wrapper_checkpoint.txt
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc  10987354 Nov 27 19:15 log.47556161._000121.job.log.1
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc      8192 Nov 27 19:15 boinc_mmap_file
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc       353 Nov 27 19:15 output.list
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc       620 Nov 27 19:15 runtime_log
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc  13445120 Nov 27 19:15 result.tar.gz
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc      8817 Nov 27 19:15 runtime_log.err
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc       662 Nov 27 19:15 40XMDmg3gh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyXLKDmh9zDom.diag
[2025-11-27 19:15:44] -rw-r--r--. 1 boinc boinc     21430 Nov 27 19:15 stderr.txt
[2025-11-27 19:15:44] HITS file was successfully produced:
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc 915224339 Nov 27 19:11 shared/HITS.pool.root.1
[2025-11-27 19:15:44]  *** Contents of shared directory: ***
[2025-11-27 19:15:44] total 1307212
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc 409299353 Nov 26 20:13 ATLAS.root_0
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc     15847 Nov 26 20:13 start_atlas.sh
[2025-11-27 19:15:44] -rw-r--r--. 2 boinc boinc    590102 Nov 26 20:13 input.tar.gz
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc 915224339 Nov 27 19:11 HITS.pool.root.1
[2025-11-27 19:15:44] -rw-------. 1 boinc boinc  13445120 Nov 27 19:15 result.tar.gz
19:15:46 (4316): run_atlas exited; CPU time 311597.501990
19:15:46 (4316): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN