Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:55:54 (29448): wrapper (7.7.26015): starting
01:55:54 (29448): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:55:54] Arguments: --nthreads 8
[2025-11-25 01:55:54] Threads: 8
[2025-11-25 01:55:54] Checking for CVMFS
[2025-11-25 01:55:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:55:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:55:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:55:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:55:54] 2.11.2.0 2873 58627 87956 153273 1 81 16579522 20275200 1 130560 0 14701142 99.832 3489390 30842 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:55:54] CVMFS is ok
[2025-11-25 01:55:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:55:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:55:54] Further information can be found at the LHC@home message board.
[2025-11-25 01:55:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:55:54] Checking for apptainer binary...
[2025-11-25 01:55:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:55:54] Running /usr/bin/apptainer --version
[2025-11-25 01:55:54] apptainer version 1.3.2-1.el7
[2025-11-25 01:55:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:55:56] c-115-13.aglt2.org
[2025-11-25 01:55:56] apptainer works
[2025-11-25 01:55:56] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:55:56] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:55:56] Starting ATLAS job with PandaID=6895417683
[2025-11-25 01:55:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:28:03 (17689): wrapper (7.7.26015): starting
12:28:03 (17689): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:28:03] Arguments: --nthreads 8
[2025-11-25 12:28:03] Threads: 8
[2025-11-25 12:28:03] This job has been restarted, cleaning up previous attempt
[2025-11-25 12:28:03] Checking for CVMFS
[2025-11-25 12:28:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:28:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:28:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:28:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:28:04] 2.11.2.0 2873 59259 87656 153291 2 49 17367269 20275200 1 130560 0 14908865 99.834 3514333 30896 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:28:04] CVMFS is ok
[2025-11-25 12:28:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:28:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:28:04] Further information can be found at the LHC@home message board.
[2025-11-25 12:28:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:28:04] Checking for apptainer binary...
[2025-11-25 12:28:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:28:04] Running /usr/bin/apptainer --version
[2025-11-25 12:28:04] apptainer version 1.3.2-1.el7
[2025-11-25 12:28:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:28:05] c-115-13.aglt2.org
[2025-11-25 12:28:05] apptainer works
[2025-11-25 12:28:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:28:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:28:05] Starting ATLAS job with PandaID=6895417683
[2025-11-25 12:28:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:49:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:49:36] 2025-11-26 04:48:44,852 | INFO     | time since job start (40822s) is within the limit (172800.0s)
[2025-11-25 23:49:36] 2025-11-26 04:48:45,476 | INFO     | monitor loop #3018: job 0:6895417683 is in state 'finished'
[2025-11-25 23:49:36] 2025-11-26 04:48:45,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,849 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 23:49:36] 2025-11-26 04:48:46,852 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.375
[2025-11-25 23:49:36] 2025-11-26 04:48:46,854 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895417683/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,855 | INFO     | extracted standard info from prmon json
[2025-11-25 23:49:36] 2025-11-26 04:48:46,855 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:49:36] 2025-11-26 04:48:46,855 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:49:36] 2025-11-26 04:48:46,865 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:49:36] 2025-11-26 04:48:46,865 | INFO     | time since job start (40824s) is within the limit (172800.0s)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,866 | INFO     | sum of square deviations: 92844799823.20488
[2025-11-25 23:49:36] 2025-11-26 04:48:46,875 | INFO     | sum of deviations: 768419117560.0365
[2025-11-25 23:49:36] 2025-11-26 04:48:46,875 | INFO     | mean x: 1764112108.5082211
[2025-11-25 23:49:36] 2025-11-26 04:48:46,875 | INFO     | mean y: 2878923.720478326
[2025-11-25 23:49:36] 2025-11-26 04:48:46,876 | INFO     | intersect: -14597588439.859972
[2025-11-25 23:49:36] 2025-11-26 04:48:46,876 | INFO     | chi2: 5.752715974309127
[2025-11-25 23:49:36] 2025-11-26 04:48:46,877 | INFO     | sum of square deviations: 90778706641.90382
[2025-11-25 23:49:36] 2025-11-26 04:48:46,886 | INFO     | sum of deviations: 981994589337.2539
[2025-11-25 23:49:36] 2025-11-26 04:48:46,886 | INFO     | mean x: 1764111956.0120482
[2025-11-25 23:49:36] 2025-11-26 04:48:46,886 | INFO     | mean y: 2894674.5933734938
[2025-11-25 23:49:36] 2025-11-26 04:48:46,886 | INFO     | intersect: -19080307321.47177
[2025-11-25 23:49:36] 2025-11-26 04:48:46,887 | INFO     | chi2: 2.7758585085644962
[2025-11-25 23:49:36] 2025-11-26 04:48:46,887 | INFO     | current chi2=2.7758585085644962 (change=51.74699183896588 %)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,888 | INFO     | sum of square deviations: 88743457500.61374
[2025-11-25 23:49:36] 2025-11-26 04:48:46,896 | INFO     | sum of deviations: 1027180611818.0654
[2025-11-25 23:49:36] 2025-11-26 04:48:46,896 | INFO     | mean x: 1764111803.5144157
[2025-11-25 23:49:36] 2025-11-26 04:48:46,896 | INFO     | mean y: 2898046.2564491653
[2025-11-25 23:49:36] 2025-11-26 04:48:46,896 | INFO     | intersect: -20416200923.79299
[2025-11-25 23:49:36] 2025-11-26 04:48:46,897 | INFO     | chi2: 2.4461403597824076
[2025-11-25 23:49:36] 2025-11-26 04:48:46,897 | INFO     | current chi2=2.4461403597824076 (change=11.878060346548375 %)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,897 | INFO     | right removable region: 658
[2025-11-25 23:49:36] 2025-11-26 04:48:46,898 | INFO     | sum of square deviations: 90778499241.90376
[2025-11-25 23:49:36] 2025-11-26 04:48:46,906 | INFO     | sum of deviations: 587171478861.7826
[2025-11-25 23:49:36] 2025-11-26 04:48:46,906 | INFO     | mean x: 1764112261.0120482
[2025-11-25 23:49:36] 2025-11-26 04:48:46,907 | INFO     | mean y: 2892274.0271084337
[2025-11-25 23:49:36] 2025-11-26 04:48:46,907 | INFO     | intersect: -11407699593.287003
[2025-11-25 23:49:36] 2025-11-26 04:48:46,907 | INFO     | chi2: 3.5062166057929858
[2025-11-25 23:49:36] 2025-11-26 04:48:46,908 | INFO     | current chi2=3.5062166057929858 (change=39.05110870324056 %)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,908 | INFO     | sum of square deviations: 88743082960.58253
[2025-11-25 23:49:36] 2025-11-26 04:48:46,916 | INFO     | sum of deviations: 547046747456.45184
[2025-11-25 23:49:36] 2025-11-26 04:48:46,916 | INFO     | mean x: 1764112413.5159333
[2025-11-25 23:49:36] 2025-11-26 04:48:46,917 | INFO     | mean y: 2895279.0045523522
[2025-11-25 23:49:36] 2025-11-26 04:48:46,917 | INFO     | intersect: -10871777154.790592
[2025-11-25 23:49:36] 2025-11-26 04:48:46,917 | INFO     | chi2: 3.467046669055011
[2025-11-25 23:49:36] 2025-11-26 04:48:46,917 | INFO     | current chi2=3.467046669055011 (change=1.117156785843129 %)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,918 | INFO     | left removable region: 20
[2025-11-25 23:49:36] 2025-11-26 04:48:46,918 | INFO     | sum of square deviations: 80526917467.69255
[2025-11-25 23:49:36] 2025-11-26 04:48:46,926 | INFO     | sum of deviations: 752178620653.3604
[2025-11-25 23:49:36] 2025-11-26 04:48:46,926 | INFO     | mean x: 1764112383.0219436
[2025-11-25 23:49:36] 2025-11-26 04:48:46,926 | INFO     | mean y: 2918758.4028213164
[2025-11-25 23:49:36] 2025-11-26 04:48:46,926 | INFO     | intersect: -16475144238.002354
[2025-11-25 23:49:36] 2025-11-26 04:48:46,927 | INFO     | chi2: 0.12399581480593852
[2025-11-25 23:49:36] 2025-11-26 04:48:46,927 | INFO     | current memory leak: 9.34 B/s (using 638 data points, chi2=0.12)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | could have reported an average CPU frequency of 2378 MHz (26 samples)
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | ..............................
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . Timing measurements:
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . get job = 0 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . initial setup = 2 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . payload setup = 8 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . stage-in = 0 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . payload execution = 40780 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,928 | INFO     | . stage-out = 3 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,929 | INFO     | . log creation = 0 s
[2025-11-25 23:49:36] 2025-11-26 04:48:46,929 | INFO     | ..............................
[2025-11-25 23:49:36] 2025-11-26 04:48:47,485 | INFO     | 
[2025-11-25 23:49:36] 2025-11-26 04:48:47,485 | INFO     | job summary report
[2025-11-25 23:49:36] 2025-11-26 04:48:47,485 | INFO     | --------------------------------------------------
[2025-11-25 23:49:36] 2025-11-26 04:48:47,486 | INFO     | PanDA job id: 6895417683
[2025-11-25 23:49:36] 2025-11-26 04:48:47,486 | INFO     | task id: 47556149
[2025-11-25 23:49:36] 2025-11-26 04:48:47,486 | INFO     | errors: (none)
[2025-11-25 23:49:36] 2025-11-26 04:48:47,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:49:36] 2025-11-26 04:48:47,486 | INFO     | pilot state: finished 
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | transexitcode: 0
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | exeerrorcode: 0
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | exeerrordiag: 
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | exitcode: 0
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | exitmsg: OK
[2025-11-25 23:49:36] 2025-11-26 04:48:47,487 | INFO     | cpuconsumptiontime: 316363 s
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | nevents: 1000
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | neventsw: 0
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | pid: 27843
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | pgrp: 27843
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | corecount: 8
[2025-11-25 23:49:36] 2025-11-26 04:48:47,488 | INFO     | event service: False
[2025-11-25 23:49:36] 2025-11-26 04:48:47,489 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 11: 2284582, 40792: 2328512, 40796: 2337506, 40799: 2337690, 40807: 2337936}
[2025-11-25 23:49:36] 2025-11-26 04:48:47,489 | INFO     | --------------------------------------------------
[2025-11-25 23:49:36] 2025-11-26 04:48:47,489 | INFO     | 
[2025-11-25 23:49:36] 2025-11-26 04:48:47,489 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 23:49:36] 2025-11-26 04:48:47,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,514 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:49:36] 2025-11-26 04:48:47,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:49:36] 2025-11-26 04:48:47,517 | INFO     | job 6895417683 has completed (purged errors)
[2025-11-25 23:49:36] 2025-11-26 04:48:47,517 | INFO     | overall cleanup function is called
[2025-11-25 23:49:36] 2025-11-26 04:48:48,533 | INFO     | --- collectZombieJob: --- 10, [27843]
[2025-11-25 23:49:36] 2025-11-26 04:48:48,533 | INFO     | zombie collector waiting for pid 27843
[2025-11-25 23:49:36] 2025-11-26 04:48:48,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:49:36] 2025-11-26 04:48:48,533 | INFO     | collected zombie processes
[2025-11-25 23:49:36] 2025-11-26 04:48:48,533 | INFO     | will attempt to kill all subprocesses of pid=27843
[2025-11-25 23:49:36] 2025-11-26 04:48:48,615 | INFO     | process IDs to be killed: [27843] (in reverse order)
[2025-11-25 23:49:36] 2025-11-26 04:48:48,667 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:49:36] 2025-11-26 04:48:48,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:49:36] 2025-11-26 04:48:48,671 | INFO     | did not find any defunct processes belonging to 27843
[2025-11-25 23:49:36] 2025-11-26 04:48:48,674 | INFO     | did not find any defunct processes belonging to 27843
[2025-11-25 23:49:36] 2025-11-26 04:48:48,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:49:36] 2025-11-26 04:48:48,677 | INFO     | ready for new job
[2025-11-25 23:49:36] 2025-11-26 04:48:48,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:49:36] 2025-11-26 04:48:48,679 | INFO     | ***************************************
[2025-11-25 23:49:36] 2025-11-26 04:48:48,680 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:49:36] 2025-11-26 04:48:48,680 | INFO     | ***************************************
[2025-11-25 23:49:36] 2025-11-26 04:48:48,680 | INFO     | 
[2025-11-25 23:49:36] 2025-11-26 04:48:48,680 | INFO     | architecture information:
[2025-11-25 23:49:36] 2025-11-26 04:48:48,681 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:49:36] 2025-11-26 04:48:48,699 | INFO     | cat /etc/os-release:
[2025-11-25 23:49:36] NAME="CentOS Linux"
[2025-11-25 23:49:36] VERSION="7 (Core)"
[2025-11-25 23:49:36] ID="centos"
[2025-11-25 23:49:36] ID_LIKE="rhel fedora"
[2025-11-25 23:49:36] VERSION_ID="7"
[2025-11-25 23:49:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:49:36] ANSI_COLOR="0;31"
[2025-11-25 23:49:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:49:36] HOME_URL="https://www.centos.org/"
[2025-11-25 23:49:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:49:36] 
[2025-11-25 23:49:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:49:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:49:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:49:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:49:36] 
[2025-11-25 23:49:36] 2025-11-26 04:48:48,699 | INFO     | ***************************************
[2025-11-25 23:49:36] 2025-11-26 04:48:49,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 23:49:36] 2025-11-26 04:48:49,221 | INFO     | sufficient remaining disk space (17051942912 B)
[2025-11-25 23:49:36] 2025-11-26 04:48:49,221 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:49:36] 2025-11-26 04:48:49,222 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:49:36] 2025-11-26 04:48:49,222 | INFO     | update_server=False
[2025-11-25 23:49:36] 2025-11-26 04:48:49,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:49:36] 2025-11-26 04:48:49,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:49:36] 2025-11-26 04:48:49,223 | INFO     | aborting loop
[2025-11-25 23:49:36] 2025-11-26 04:48:49,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:49:36] 2025-11-26 04:48:49,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:49:36] 2025-11-26 04:48:49,639 | INFO     | all job control threads have been joined
[2025-11-25 23:49:36] 2025-11-26 04:48:49,990 | INFO     | all payload control threads have been joined
[2025-11-25 23:49:36] 2025-11-26 04:48:50,228 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,228 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,237 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,263 | INFO     | [job] validate thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,279 | INFO     | all data control threads have been joined
[2025-11-25 23:49:36] 2025-11-26 04:48:50,631 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,645 | INFO     | [job] control thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,994 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:50,995 | INFO     | [payload] control thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,022 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,137 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,228 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,285 | INFO     | [data] control thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,352 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:51,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:52,028 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:49:36] 2025-11-26 04:48:53,033 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:48:53,229 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:49:36] 2025-11-26 04:49:20,070 | INFO     | PID=21385 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:49:36] 2025-11-26 04:49:20,070 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:49:36] 2025-11-26 04:49:20,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:49:36] 2025-11-26 04:49:20,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:49:36] 2025-11-26 04:49:30,083 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:49:36] 2025-11-26 04:49:30,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613972371264)>', '<ExcThread(monitor, started 140613219489536)>']
[2025-11-25 23:49:36] 2025-11-26 04:49:31,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:49:36] 2025-11-26 04:49:31,127 | INFO     | [monitor] control thread has ended
[2025-11-25 23:49:36] 2025-11-26 04:49:35,718 | INFO     | all workflow threads have been joined
[2025-11-25 23:49:36] 2025-11-26 04:49:35,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:49:36] 2025-11-26 04:49:35,718 | INFO     | traces error code: 0
[2025-11-25 23:49:36] 2025-11-26 04:49:35,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:49:36] 2025-11-26 04:49:35,819 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:49:36] 2025-11-26 04:49:35,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:49:36] 2025-11-26 04:49:35,829 [wrapper] pilotpid: 21385
[2025-11-25 23:49:36] 2025-11-26 04:49:35,834 [wrapper] Pilot exit status: 0
[2025-11-25 23:49:36] 2025-11-26 04:49:35,850 [wrapper] pandaids: 6895417683 6895417683
[2025-11-25 23:49:36] 2025-11-26 04:49:35,900 [wrapper] cleanup supervisor_pilot 30704 21386
[2025-11-25 23:49:36] 2025-11-26 04:49:35,905 [wrapper] Test setup, not cleaning
[2025-11-25 23:49:36] 2025-11-26 04:49:35,909 [wrapper] apfmon messages muted
[2025-11-25 23:49:36] 2025-11-26 04:49:35,914 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:49:36] 2025-11-26 04:49:35,920 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:49:36]  *** Error codes and diagnostics ***
[2025-11-25 23:49:36]     "exeErrorCode": 0,
[2025-11-25 23:49:36]     "exeErrorDiag": "",
[2025-11-25 23:49:36]     "pilotErrorCode": 0,
[2025-11-25 23:49:36]     "pilotErrorDiag": "",
[2025-11-25 23:49:36]  *** Listing of results directory ***
[2025-11-25 23:49:36] total 1719940
[2025-11-25 23:49:36] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 03:09 queuedata.json
[2025-11-25 23:49:36] -rwx------ 1 boincer umatlas     36292 Nov 24 03:09 runpilot2-wrapper.sh
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:49:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:55 run_atlas
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:55 job.xml
[2025-11-25 23:49:36] -rw-r--r-- 3 boincer umatlas 410437944 Nov 25 01:55 EVNT.47483658._001270.pool.root.1
[2025-11-25 23:49:36] -rw-r--r-- 3 boincer umatlas 410437944 Nov 25 01:55 ATLAS.root_0
[2025-11-25 23:49:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:55 start_atlas.sh
[2025-11-25 23:49:36] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:55 shared
[2025-11-25 23:49:36] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 01:55 input.tar.gz
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:55 boinc_lockfile
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 12:28 pandaJob.out
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas        57 Nov 25 12:28 setup.sh.local
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas    991543 Nov 25 12:28 agis_schedconf.cvmfs.json
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas       533 Nov 25 23:39 boinc_task_state.xml
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas      5913 Nov 25 23:46 init_data.xml
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas 921294862 Nov 25 23:47 HITS.47556149._002567.pool.root.1
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas      1060 Nov 25 23:48 memory_monitor_summary.json
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas   1516240 Nov 25 23:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas   1924790 Nov 25 23:48 log.47556149._002567.job.log.tgz.1
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas        96 Nov 25 23:48 pilot_heartbeat.json
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas      8673 Nov 25 23:48 heartbeat.json
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 23:49 boinc_mmap_file
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas        29 Nov 25 23:49 wrapper_checkpoint.txt
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas      4746 Nov 25 23:49 pilotlog.txt
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas   5637684 Nov 25 23:49 log.47556149._002567.job.log.1
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas       353 Nov 25 23:49 output.list
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas       620 Nov 25 23:49 runtime_log
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas   7577600 Nov 25 23:49 result.tar.gz
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas       793 Nov 25 23:49 TuEODmhogh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAXLKDmzuTj3n.diag
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 23:49 runtime_log.err
[2025-11-25 23:49:36] -rw-r--r-- 1 boincer umatlas     23469 Nov 25 23:49 stderr.txt
[2025-11-25 23:49:36] HITS file was successfully produced:
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas 921294862 Nov 25 23:47 shared/HITS.pool.root.1
[2025-11-25 23:49:36]  *** Contents of shared directory: ***
[2025-11-25 23:49:36] total 1308528
[2025-11-25 23:49:36] -rw-r--r-- 3 boincer umatlas 410437944 Nov 25 01:55 ATLAS.root_0
[2025-11-25 23:49:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:55 start_atlas.sh
[2025-11-25 23:49:36] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 01:55 input.tar.gz
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas 921294862 Nov 25 23:47 HITS.pool.root.1
[2025-11-25 23:49:36] -rw------- 1 boincer umatlas   7577600 Nov 25 23:49 result.tar.gz
23:49:37 (17689): run_atlas exited; CPU time 312909.000848
23:49:37 (17689): called boinc_finish(0)

</stderr_txt>
]]>

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