Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:04:47 (494): wrapper (7.7.26015): starting
02:04:47 (494): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:04:47] Arguments: --nthreads 8
[2025-11-25 02:04:47] Threads: 8
[2025-11-25 02:04:47] Checking for CVMFS
[2025-11-25 02:04:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:04:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:04:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:04:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:04:47] 2.11.2.0 21766 115935 141060 153274 3 49 16395382 18432000 1885 130560 0 84171210 99.974 4820702 27008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 02:04:47] CVMFS is ok
[2025-11-25 02:04:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:04:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:04:47] Further information can be found at the LHC@home message board.
[2025-11-25 02:04:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:04:47] Checking for apptainer binary...
[2025-11-25 02:04:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:04:47] Running /usr/bin/apptainer --version
[2025-11-25 02:04:47] apptainer version 1.3.2-1.el7
[2025-11-25 02:04:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:04:48] c-206-18.aglt2.org
[2025-11-25 02:04:48] apptainer works
[2025-11-25 02:04:48] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:04:48] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:04:48] Starting ATLAS job with PandaID=6895417695
[2025-11-25 02:04:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:02:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:02:57] 2025-11-26 02:02:09,697 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 21:02:57] 2025-11-26 02:02:09,700 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.625
[2025-11-25 21:02:57] 2025-11-26 02:02:09,703 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895417695/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,703 | INFO     | extracted standard info from prmon json
[2025-11-25 21:02:57] 2025-11-26 02:02:09,703 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:02:57] 2025-11-26 02:02:09,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:02:57] 2025-11-26 02:02:09,718 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:02:57] 2025-11-26 02:02:09,720 | INFO     | sum of square deviations: 433314568591.179
[2025-11-25 21:02:57] 2025-11-26 02:02:09,742 | INFO     | sum of deviations: 2250542072663.844
[2025-11-25 21:02:57] 2025-11-26 02:02:09,742 | INFO     | mean x: 1764088394.1189625
[2025-11-25 21:02:57] 2025-11-26 02:02:09,742 | INFO     | mean y: 2860002.8658318426
[2025-11-25 21:02:57] 2025-11-26 02:02:09,743 | INFO     | intersect: -9159433256.210949
[2025-11-25 21:02:57] 2025-11-26 02:02:09,743 | INFO     | chi2: 4.858558432477784
[2025-11-25 21:02:57] 2025-11-26 02:02:09,745 | INFO     | sum of square deviations: 427527033921.754
[2025-11-25 21:02:57] 2025-11-26 02:02:09,767 | INFO     | sum of deviations: 2541783673334.104
[2025-11-25 21:02:57] 2025-11-26 02:02:09,767 | INFO     | mean x: 1764088241.621743
[2025-11-25 21:02:57] 2025-11-26 02:02:09,767 | INFO     | mean y: 2867672.028751123
[2025-11-25 21:02:57] 2025-11-26 02:02:09,767 | INFO     | intersect: -10485195854.020603
[2025-11-25 21:02:57] 2025-11-26 02:02:09,768 | INFO     | chi2: 2.7218159950700596
[2025-11-25 21:02:57] 2025-11-26 02:02:09,769 | INFO     | current chi2=2.7218159950700596 (change=43.97893875525587 %)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,770 | INFO     | sum of square deviations: 421791267664.81213
[2025-11-25 21:02:57] 2025-11-26 02:02:09,792 | INFO     | sum of deviations: 2634779817512.352
[2025-11-25 21:02:57] 2025-11-26 02:02:09,792 | INFO     | mean x: 1764088089.1245487
[2025-11-25 21:02:57] 2025-11-26 02:02:09,792 | INFO     | mean y: 2870140.7003610106
[2025-11-25 21:02:57] 2025-11-26 02:02:09,792 | INFO     | intersect: -11016759827.63018
[2025-11-25 21:02:57] 2025-11-26 02:02:09,794 | INFO     | chi2: 2.3566569948770324
[2025-11-25 21:02:57] 2025-11-26 02:02:09,794 | INFO     | current chi2=2.3566569948770324 (change=13.416006109686633 %)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,794 | INFO     | right removable region: 1107
[2025-11-25 21:02:57] 2025-11-26 02:02:09,796 | INFO     | sum of square deviations: 427526611801.754
[2025-11-25 21:02:57] 2025-11-26 02:02:09,839 | INFO     | sum of deviations: 1962761625341.5305
[2025-11-25 21:02:57] 2025-11-26 02:02:09,839 | INFO     | mean x: 1764088546.621743
[2025-11-25 21:02:57] 2025-11-26 02:02:09,839 | INFO     | mean y: 2867576.4905660376
[2025-11-25 21:02:57] 2025-11-26 02:02:09,840 | INFO     | intersect: -8096009095.587195
[2025-11-25 21:02:57] 2025-11-26 02:02:09,841 | INFO     | chi2: 2.838085550490317
[2025-11-25 21:02:57] 2025-11-26 02:02:09,841 | INFO     | current chi2=2.838085550490317 (change=41.58585123688755 %)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,843 | INFO     | sum of square deviations: 421790627226.55176
[2025-11-25 21:02:57] 2025-11-26 02:02:09,885 | INFO     | sum of deviations: 1889038634321.3496
[2025-11-25 21:02:57] 2025-11-26 02:02:09,885 | INFO     | mean x: 1764088699.1218412
[2025-11-25 21:02:57] 2025-11-26 02:02:09,885 | INFO     | mean y: 2869536.2418772564
[2025-11-25 21:02:57] 2025-11-26 02:02:09,886 | INFO     | intersect: -7897807937.136251
[2025-11-25 21:02:57] 2025-11-26 02:02:09,887 | INFO     | chi2: 2.789021711305785
[2025-11-25 21:02:57] 2025-11-26 02:02:09,887 | INFO     | current chi2=2.789021711305785 (change=1.7287653353527528 %)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,887 | INFO     | left removable region: 20
[2025-11-25 21:02:57] 2025-11-26 02:02:09,889 | INFO     | sum of square deviations: 398260028499.84766
[2025-11-25 21:02:57] 2025-11-26 02:02:09,930 | INFO     | sum of deviations: 2139331611246.108
[2025-11-25 21:02:57] 2025-11-26 02:02:09,931 | INFO     | mean x: 1764088668.6283348
[2025-11-25 21:02:57] 2025-11-26 02:02:09,931 | INFO     | mean y: 2883622.6264949404
[2025-11-25 21:02:57] 2025-11-26 02:02:09,931 | INFO     | intersect: -9473263577.114643
[2025-11-25 21:02:57] 2025-11-26 02:02:09,933 | INFO     | chi2: 0.2046785738370586
[2025-11-25 21:02:57] 2025-11-26 02:02:09,933 | INFO     | current memory leak: 5.37 B/s (using 1087 data points, chi2=0.20)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,934 | INFO     | could have reported an average CPU frequency of 2625 MHz (41 samples)
[2025-11-25 21:02:57] 2025-11-26 02:02:09,934 | INFO     | ..............................
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . Timing measurements:
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . get job = 0 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . initial setup = 2 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . payload setup = 5 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . stage-in = 0 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,935 | INFO     | . payload execution = 68197 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,936 | INFO     | . stage-out = 4 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,936 | INFO     | . log creation = 0 s
[2025-11-25 21:02:57] 2025-11-26 02:02:09,936 | INFO     | ..............................
[2025-11-25 21:02:57] 2025-11-26 02:02:09,960 | INFO     | time since job start (68230s) is within the limit (172800.0s)
[2025-11-25 21:02:57] 2025-11-26 02:02:10,262 | INFO     | 
[2025-11-25 21:02:57] 2025-11-26 02:02:10,262 | INFO     | job summary report
[2025-11-25 21:02:57] 2025-11-26 02:02:10,262 | INFO     | --------------------------------------------------
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | PanDA job id: 6895417695
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | task id: 47556149
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | errors: (none)
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | pilot state: finished 
[2025-11-25 21:02:57] 2025-11-26 02:02:10,263 | INFO     | transexitcode: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | exeerrorcode: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | exeerrordiag: 
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | exitcode: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | exitmsg: OK
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | cpuconsumptiontime: 526790 s
[2025-11-25 21:02:57] 2025-11-26 02:02:10,264 | INFO     | nevents: 1000
[2025-11-25 21:02:57] 2025-11-26 02:02:10,265 | INFO     | neventsw: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:10,265 | INFO     | pid: 13507
[2025-11-25 21:02:57] 2025-11-26 02:02:10,265 | INFO     | pgrp: 13507
[2025-11-25 21:02:57] 2025-11-26 02:02:10,265 | INFO     | corecount: 8
[2025-11-25 21:02:57] 2025-11-26 02:02:10,265 | INFO     | event service: False
[2025-11-25 21:02:57] 2025-11-26 02:02:10,266 | INFO     | sizes: {0: 2284088, 1: 2284287, 4: 2284549, 11: 2284577, 68206: 2340415, 68211: 2349598, 68215: 2349884}
[2025-11-25 21:02:57] 2025-11-26 02:02:10,266 | INFO     | --------------------------------------------------
[2025-11-25 21:02:57] 2025-11-26 02:02:10,266 | INFO     | 
[2025-11-25 21:02:57] 2025-11-26 02:02:10,266 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 21:02:57] 2025-11-26 02:02:10,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:02:57] 2025-11-26 02:02:10,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:02:57] 2025-11-26 02:02:10,289 | INFO     | job 6895417695 has completed (purged errors)
[2025-11-25 21:02:57] 2025-11-26 02:02:10,289 | INFO     | overall cleanup function is called
[2025-11-25 21:02:57] 2025-11-26 02:02:11,305 | INFO     | --- collectZombieJob: --- 10, [13507]
[2025-11-25 21:02:57] 2025-11-26 02:02:11,305 | INFO     | zombie collector waiting for pid 13507
[2025-11-25 21:02:57] 2025-11-26 02:02:11,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:02:57] 2025-11-26 02:02:11,306 | INFO     | collected zombie processes
[2025-11-25 21:02:57] 2025-11-26 02:02:11,306 | INFO     | will attempt to kill all subprocesses of pid=13507
[2025-11-25 21:02:57] 2025-11-26 02:02:11,441 | INFO     | process IDs to be killed: [13507] (in reverse order)
[2025-11-25 21:02:57] 2025-11-26 02:02:11,574 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:02:57] 2025-11-26 02:02:11,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:02:57] 2025-11-26 02:02:11,580 | INFO     | did not find any defunct processes belonging to 13507
[2025-11-25 21:02:57] 2025-11-26 02:02:11,586 | INFO     | did not find any defunct processes belonging to 13507
[2025-11-25 21:02:57] 2025-11-26 02:02:11,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:02:57] 2025-11-26 02:02:11,588 | INFO     | ready for new job
[2025-11-25 21:02:57] 2025-11-26 02:02:11,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:02:57] 2025-11-26 02:02:11,593 | INFO     | ***************************************
[2025-11-25 21:02:57] 2025-11-26 02:02:11,593 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:02:57] 2025-11-26 02:02:11,593 | INFO     | ***************************************
[2025-11-25 21:02:57] 2025-11-26 02:02:11,593 | INFO     | 
[2025-11-25 21:02:57] 2025-11-26 02:02:11,595 | INFO     | architecture information:
[2025-11-25 21:02:57] 2025-11-26 02:02:11,595 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:02:57] 2025-11-26 02:02:11,609 | INFO     | cat /etc/os-release:
[2025-11-25 21:02:57] NAME="CentOS Linux"
[2025-11-25 21:02:57] VERSION="7 (Core)"
[2025-11-25 21:02:57] ID="centos"
[2025-11-25 21:02:57] ID_LIKE="rhel fedora"
[2025-11-25 21:02:57] VERSION_ID="7"
[2025-11-25 21:02:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:02:57] ANSI_COLOR="0;31"
[2025-11-25 21:02:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:02:57] HOME_URL="https://www.centos.org/"
[2025-11-25 21:02:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:02:57] 
[2025-11-25 21:02:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:02:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:02:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:02:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:02:57] 
[2025-11-25 21:02:57] 2025-11-26 02:02:11,609 | INFO     | ***************************************
[2025-11-25 21:02:57] 2025-11-26 02:02:12,113 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 21:02:57] 2025-11-26 02:02:12,126 | INFO     | sufficient remaining disk space (25791823872 B)
[2025-11-25 21:02:57] 2025-11-26 02:02:12,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:02:57] 2025-11-26 02:02:12,127 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:02:57] 2025-11-26 02:02:12,127 | INFO     | update_server=False
[2025-11-25 21:02:57] 2025-11-26 02:02:12,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:02:57] 2025-11-26 02:02:12,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:02:57] 2025-11-26 02:02:12,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:02:57] 2025-11-26 02:02:12,391 | INFO     | all payload control threads have been joined
[2025-11-25 21:02:57] 2025-11-26 02:02:12,531 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 21:02:57] 2025-11-26 02:02:12,531 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 21:02:57] 2025-11-26 02:02:12,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:02:57] 2025-11-26 02:02:12,532 | INFO     | will abort loop
[2025-11-25 21:02:57] 2025-11-26 02:02:12,563 | INFO     | all data control threads have been joined
[2025-11-25 21:02:57] 2025-11-26 02:02:13,132 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,284 | INFO     | all job control threads have been joined
[2025-11-25 21:02:57] 2025-11-26 02:02:13,350 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,399 | INFO     | [payload] control thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,419 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,537 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,568 | INFO     | [data] control thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,744 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,815 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,910 | INFO     | [job] validate thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,967 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:13,986 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:14,133 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:14,289 | INFO     | [job] control thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:15,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:02:57] 2025-11-26 02:02:16,072 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:16,228 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:02:57] 2025-11-26 02:02:43,194 | INFO     | PID=4350 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 21:02:57] 2025-11-26 02:02:43,194 | INFO     | .. there are 3 such processes running
[2025-11-25 21:02:57] 2025-11-26 02:02:43,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:02:57] 2025-11-26 02:02:43,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:02:57] 2025-11-26 02:02:43,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:02:57] 2025-11-26 02:02:52,204 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:02:57] 2025-11-26 02:02:52,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147966777152)>', '<ExcThread(monitor, started 140147265894144)>']
[2025-11-25 21:02:57] 2025-11-26 02:02:53,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:02:57] 2025-11-26 02:02:53,240 | INFO     | [monitor] control thread has ended
[2025-11-25 21:02:57] 2025-11-26 02:02:57,418 | INFO     | all workflow threads have been joined
[2025-11-25 21:02:57] 2025-11-26 02:02:57,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:02:57] 2025-11-26 02:02:57,418 | INFO     | traces error code: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:57,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:02:57] 2025-11-26 02:02:57,514 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:02:57] 2025-11-26 02:02:57,517 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:02:57] 2025-11-26 02:02:57,519 [wrapper] pilotpid: 4350
[2025-11-25 21:02:57] 2025-11-26 02:02:57,521 [wrapper] Pilot exit status: 0
[2025-11-25 21:02:57] 2025-11-26 02:02:57,529 [wrapper] pandaids: 6895417695
[2025-11-25 21:02:57] 2025-11-26 02:02:57,555 [wrapper] cleanup supervisor_pilot 10023 4351
[2025-11-25 21:02:57] 2025-11-26 02:02:57,558 [wrapper] Test setup, not cleaning
[2025-11-25 21:02:57] 2025-11-26 02:02:57,560 [wrapper] apfmon messages muted
[2025-11-25 21:02:57] 2025-11-26 02:02:57,562 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:02:57] 2025-11-26 02:02:57,564 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:02:57]  *** Error codes and diagnostics ***
[2025-11-25 21:02:57]     "exeErrorCode": 0,
[2025-11-25 21:02:57]     "exeErrorDiag": "",
[2025-11-25 21:02:57]     "pilotErrorCode": 0,
[2025-11-25 21:02:57]     "pilotErrorDiag": "",
[2025-11-25 21:02:57]  *** Listing of results directory ***
[2025-11-25 21:02:57] total 1313840
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 03:16 queuedata.json
[2025-11-25 21:02:57] -rwx------ 1 boincer umatlas     36292 Nov 24 03:17 runpilot2-wrapper.sh
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas       100 Nov 25 02:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:02:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 02:04 run_atlas
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas       105 Nov 25 02:04 job.xml
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas 411142601 Nov 25 02:04 EVNT.47483658._001271.pool.root.1
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:04 start_atlas.sh
[2025-11-25 21:02:57] drwxrwx--x 2 boincer umatlas      4096 Nov 25 02:04 shared
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas    590109 Nov 25 02:04 input.tar.gz
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas         0 Nov 25 02:04 boinc_lockfile
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 02:04 pandaJob.out
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas        57 Nov 25 02:04 setup.sh.local
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas    991801 Nov 25 02:04 agis_schedconf.cvmfs.json
[2025-11-25 21:02:57] drwx------ 5 boincer umatlas      4096 Nov 25 02:04 pilot3
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas       533 Nov 25 20:49 boinc_task_state.xml
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas 906772168 Nov 25 21:01 HITS.47556149._002579.pool.root.1
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas      1067 Nov 25 21:01 memory_monitor_summary.json
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas   1516240 Nov 25 21:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas   2306219 Nov 25 21:02 log.47556149._002579.job.log.tgz.1
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas      8677 Nov 25 21:02 heartbeat.json
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas        95 Nov 25 21:02 pilot_heartbeat.json
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 21:02 init_data.xml
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 21:02 boinc_mmap_file
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas        29 Nov 25 21:02 wrapper_checkpoint.txt
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas      5006 Nov 25 21:02 pilotlog.txt
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas   9463311 Nov 25 21:02 log.47556149._002579.job.log.1
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas       353 Nov 25 21:02 output.list
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas       620 Nov 25 21:02 runtime_log
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas  11786240 Nov 25 21:02 result.tar.gz
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 21:02 runtime_log.err
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas       668 Nov 25 21:02 cyGLDm5vgh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKyIKDmwGfLTm.diag
[2025-11-25 21:02:57] -rw-r--r-- 1 boincer umatlas     21248 Nov 25 21:02 stderr.txt
[2025-11-25 21:02:57] HITS file was successfully produced:
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas 906772168 Nov 25 21:01 shared/HITS.pool.root.1
[2025-11-25 21:02:57]  *** Contents of shared directory: ***
[2025-11-25 21:02:57] total 1299140
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas 411142601 Nov 25 02:04 ATLAS.root_0
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 02:04 start_atlas.sh
[2025-11-25 21:02:57] -rw-r--r-- 2 boincer umatlas    590109 Nov 25 02:04 input.tar.gz
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas 906772168 Nov 25 21:01 HITS.pool.root.1
[2025-11-25 21:02:57] -rw------- 1 boincer umatlas  11786240 Nov 25 21:02 result.tar.gz
21:02:58 (494): run_atlas exited; CPU time 525677.955103
21:02:58 (494): called boinc_finish(0)

</stderr_txt>
]]>

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