Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:18:14 (1078501): wrapper (7.7.26015): starting
22:18:14 (1078501): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 22:18:14] Arguments: --nthreads 12
[2025-11-24 22:18:14] Threads: 12
[2025-11-24 22:18:14] Checking for CVMFS
[2025-11-24 22:18:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:18:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:18:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:18:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:18:14] 2.11.5.0 201091 26481 146888 153272 1 344 44262189 45568000 10745 130560 0 253035907 99.758 184753406 26591 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 22:18:14] CVMFS is ok
[2025-11-24 22:18:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:18:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:18:14] Further information can be found at the LHC@home message board.
[2025-11-24 22:18:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:18:14] Checking for apptainer binary...
[2025-11-24 22:18:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:18:14] Running /usr/bin/apptainer --version
[2025-11-24 22:18:14] apptainer version 1.4.1-1.el9
[2025-11-24 22:18:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:18:15] wns0040.triumf.lcg
[2025-11-24 22:18:15] apptainer works
[2025-11-24 22:18:15] Set ATHENA_PROC_NUMBER=12
[2025-11-24 22:18:15] Set ATHENA_CORE_NUMBER=12
[2025-11-24 22:18:15] Starting ATLAS job with PandaID=6894238244
[2025-11-24 22:18:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:21:33]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | found no stored workdir sizes
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | wrong length of table data, x=[1764051527.0], y=[1180.0] (must be same and length>=4)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | could have reported an average CPU frequency of 2610 MHz (4 samples)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . Timing measurements:
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . get job = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . initial setup = 2 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload setup = 4 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-in = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload execution = 15 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-out = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . log creation = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238244/pilotlog.txt
[2025-11-24 22:21:33] 2025-11-25 06:21:01,521 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 22:21:33] - Log from pilotlog.txt -
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | found no stored workdir sizes
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | wrong length of table data, x=[1764051527.0], y=[1180.0] (must be same and length>=4)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | could have reported an average CPU frequency of 2610 MHz (4 samples)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . Timing measurements:
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . get job = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . initial setup = 2 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload setup = 4 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-in = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload execution = 15 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-out = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . log creation = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238244/pilotlog.txt
[2025-11-24 22:21:33] 2025-11-25 06:21:01,522 | WARNING  | 
[2025-11-24 22:21:33] [begin log extracts]
[2025-11-24 22:21:33] - Log from pilotlog.txt -
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:21:33] 2025-11-25 06:21:01,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | found no stored workdir sizes
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | will not add max space = 0 B to job metrics
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | WARNING  | wrong length of table data, x=[1764051527.0], y=[1180.0] (must be same and length>=4)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,511 | INFO     | could have reported an average CPU frequency of 2610 MHz (4 samples)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . Timing measurements:
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . get job = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . initial setup = 2 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload setup = 4 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-in = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . payload execution = 15 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . stage-out = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | . log creation = 0 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | ..............................
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 22:21:33] 2025-11-25 06:21:01,512 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894238244/pilotlog.txt
[2025-11-24 22:21:33] [end log extracts]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,522 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,523 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | 
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | job summary report
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | --------------------------------------------------
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | PanDA job id: 6894238244
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | task id: 47523675
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 22:18:54,367 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | pilot state: failed 
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | transexitcode: 65
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | exeerrorcode: 65
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | exitcode: 65
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | cpuconsumptiontime: 20 s
[2025-11-24 22:21:33] 2025-11-25 06:21:01,720 | INFO     | nevents: 0
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | neventsw: 0
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | pid: 1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | pgrp: 1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | corecount: 12
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | event service: False
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | sizes: {0: 2283940, 4: 2284202, 11: 2284230, 23: 2307521, 25: 2311841, 144: 2311979}
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | --------------------------------------------------
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | 
[2025-11-24 22:21:33] 2025-11-25 06:21:01,721 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 22:21:33] 2025-11-25 06:21:01,735 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,735 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,735 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,735 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | job 6894238244 has completed (purged errors)
[2025-11-24 22:21:33] 2025-11-25 06:21:01,736 | INFO     | overall cleanup function is called
[2025-11-24 22:21:33] 2025-11-25 06:21:02,743 | INFO     | --- collectZombieJob: --- 10, [1088683]
[2025-11-24 22:21:33] 2025-11-25 06:21:02,743 | INFO     | zombie collector waiting for pid 1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:02,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:21:33] 2025-11-25 06:21:02,743 | INFO     | collected zombie processes
[2025-11-24 22:21:33] 2025-11-25 06:21:02,743 | INFO     | will attempt to kill all subprocesses of pid=1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:02,879 | INFO     | process IDs to be killed: [1088683] (in reverse order)
[2025-11-24 22:21:33] 2025-11-25 06:21:02,931 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:21:33] 2025-11-25 06:21:02,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:21:33] 2025-11-25 06:21:02,937 | INFO     | did not find any defunct processes belonging to 1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:02,942 | INFO     | did not find any defunct processes belonging to 1088683
[2025-11-24 22:21:33] 2025-11-25 06:21:02,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:21:33] 2025-11-25 06:21:02,943 | INFO     | ready for new job
[2025-11-24 22:21:33] 2025-11-25 06:21:02,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:21:33] 2025-11-25 06:21:02,945 | INFO     | ***************************************
[2025-11-24 22:21:33] 2025-11-25 06:21:02,945 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:21:33] 2025-11-25 06:21:02,945 | INFO     | ***************************************
[2025-11-24 22:21:33] 2025-11-25 06:21:02,945 | INFO     | 
[2025-11-24 22:21:33] 2025-11-25 06:21:02,947 | INFO     | architecture information:
[2025-11-24 22:21:33] 2025-11-25 06:21:02,948 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:21:33] 2025-11-25 06:21:02,957 | INFO     | cat /etc/os-release:
[2025-11-24 22:21:33] NAME="CentOS Linux"
[2025-11-24 22:21:33] VERSION="7 (Core)"
[2025-11-24 22:21:33] ID="centos"
[2025-11-24 22:21:33] ID_LIKE="rhel fedora"
[2025-11-24 22:21:33] VERSION_ID="7"
[2025-11-24 22:21:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:21:33] ANSI_COLOR="0;31"
[2025-11-24 22:21:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:21:33] HOME_URL="https://www.centos.org/"
[2025-11-24 22:21:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:21:33] 
[2025-11-24 22:21:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:21:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:21:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:21:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:21:33] 
[2025-11-24 22:21:33] 2025-11-25 06:21:02,957 | INFO     | ***************************************
[2025-11-24 22:21:33] 2025-11-25 06:21:03,460 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 22:21:33] 2025-11-25 06:21:03,472 | INFO     | sufficient remaining disk space (1817529286656 B)
[2025-11-24 22:21:33] 2025-11-25 06:21:03,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:21:33] 2025-11-25 06:21:03,472 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:21:33] 2025-11-25 06:21:03,472 | INFO     | update_server=False
[2025-11-24 22:21:33] 2025-11-25 06:21:03,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:21:33] 2025-11-25 06:21:03,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:21:33] 2025-11-25 06:21:03,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:21:33] 2025-11-25 06:21:03,701 | INFO     | all data control threads have been joined
[2025-11-24 22:21:33] 2025-11-25 06:21:03,976 | INFO     | all job control threads have been joined
[2025-11-24 22:21:33] 2025-11-25 06:21:04,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:21:33] 2025-11-25 06:21:04,241 | INFO     | aborting loop
[2025-11-24 22:21:33] 2025-11-25 06:21:04,478 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,480 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,495 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,624 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,694 | INFO     | all payload control threads have been joined
[2025-11-24 22:21:33] 2025-11-25 06:21:04,705 | INFO     | [data] control thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:04,981 | INFO     | [job] control thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,132 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,242 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,254 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,482 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,544 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,699 | INFO     | [payload] control thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:21:33] 2025-11-25 06:21:05,755 | INFO     | [job] validate thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:05,906 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:09,754 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:21:33] 2025-11-25 06:21:23,574 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:21:33] 2025-11-25 06:21:25,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731110946624)>', '<ExcThread(monitor, started 139730578564864)>']
[2025-11-24 22:21:33] 2025-11-25 06:21:30,493 | INFO     | all workflow threads have been joined
[2025-11-24 22:21:33] 2025-11-25 06:21:30,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:21:33] 2025-11-25 06:21:30,493 | INFO     | traces error code: 0
[2025-11-24 22:21:33] 2025-11-25 06:21:30,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:21:33] 2025-11-25 06:21:33,222 | INFO     | PID=1082145 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 22:21:33] 2025-11-25 06:21:33,222 | INFO     | .. there are 15 such processes running
[2025-11-24 22:21:33] 2025-11-25 06:21:33,222 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:21:33] 2025-11-25 06:21:33,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:21:33] 2025-11-25 06:21:33,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:21:33] 2025-11-25 06:21:33,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:21:33] 2025-11-25 06:21:33,223 | INFO     | [monitor] control thread has ended
[2025-11-24 22:21:33] 2025-11-25 06:21:33,340 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:21:33] 2025-11-25 06:21:33,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:21:33] 2025-11-25 06:21:33,345 [wrapper] pilotpid: 1082145
[2025-11-24 22:21:33] 2025-11-25 06:21:33,347 [wrapper] Pilot exit status: 0
[2025-11-24 22:21:33] 2025-11-25 06:21:33,355 [wrapper] pandaids: 6894238244
[2025-11-24 22:21:33] 2025-11-25 06:21:33,389 [wrapper] cleanup supervisor_pilot 1082151 1082146
[2025-11-24 22:21:33] 2025-11-25 06:21:33,392 [wrapper] Test setup, not cleaning
[2025-11-24 22:21:33] 2025-11-25 06:21:33,394 [wrapper] apfmon messages muted
[2025-11-24 22:21:33] 2025-11-25 06:21:33,396 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:21:33] 2025-11-25 06:21:33,398 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:21:33]  *** Error codes and diagnostics ***
[2025-11-24 22:21:33]     "exeErrorCode": 65,
[2025-11-24 22:21:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-24 22:21:33]     "pilotErrorCode": 1305,
[2025-11-24 22:21:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-24 22:21:33]  *** Listing of results directory ***
[2025-11-24 22:21:33] total 284952
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 11:02 pilot3.tar.gz
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 11:16 queuedata.json
[2025-11-24 22:21:33] -rwx------. 1 boinc boinc     36292 Nov 24 11:17 runpilot2-wrapper.sh
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:21:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:18 run_atlas
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:18 job.xml
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc      6595 Nov 24 22:18 init_data.xml
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc 287673146 Nov 24 22:18 EVNT.47523673._000001.pool.root.1
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:18 start_atlas.sh
[2025-11-24 22:21:33] drwxrwx--x. 2 boinc boinc      4096 Nov 24 22:18 shared
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc    589939 Nov 24 22:18 input.tar.gz
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:18 boinc_lockfile
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc      2612 Nov 24 22:18 pandaJob.out
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc    991801 Nov 24 22:18 agis_schedconf.cvmfs.json
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc   1516227 Nov 24 22:18 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:21:33] drwx------. 5 boinc boinc      4096 Nov 24 22:18 pilot3
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc       521 Nov 24 22:18 boinc_task_state.xml
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc       971 Nov 24 22:18 memory_monitor_summary.json
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc     20964 Nov 24 22:19 log.47523675._000024.job.log.tgz.1
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc      8406 Nov 24 22:21 heartbeat.json
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc      8192 Nov 24 22:21 boinc_mmap_file
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc        22 Nov 24 22:21 wrapper_checkpoint.txt
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc        95 Nov 24 22:21 pilot_heartbeat.json
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc       823 Nov 24 22:21 pilotlog.txt
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc     85864 Nov 24 22:21 log.47523675._000024.job.log.1
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc       188 Nov 24 22:21 output.list
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc       620 Nov 24 22:21 runtime_log
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc    122880 Nov 24 22:21 result.tar.gz
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc      8636 Nov 24 22:21 runtime_log.err
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc       645 Nov 24 22:21 lnjKDmnErh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsAJKDm0n9Wen.diag
[2025-11-24 22:21:33] -rw-r--r--. 1 boinc boinc     21745 Nov 24 22:21 stderr.txt
[2025-11-24 22:21:33] No HITS result produced
[2025-11-24 22:21:33]  *** Contents of shared directory: ***
[2025-11-24 22:21:33] total 281652
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc 287673146 Nov 24 22:18 ATLAS.root_0
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:18 start_atlas.sh
[2025-11-24 22:21:33] -rw-r--r--. 2 boinc boinc    589939 Nov 24 22:18 input.tar.gz
[2025-11-24 22:21:33] -rw-------. 1 boinc boinc    122880 Nov 24 22:21 result.tar.gz
22:21:34 (1078501): run_atlas exited; CPU time 20.469700
22:21:34 (1078501): called boinc_finish(0)

</stderr_txt>
]]>

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