Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:37:31 (587): wrapper (7.7.26015): starting
01:37:31 (587): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:37:31] Arguments: --nthreads 8
[2025-11-25 01:37:31] Threads: 8
[2025-11-25 01:37:31] Checking for CVMFS
[2025-11-25 01:37:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:37:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:37:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:37:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:37:31] 2.11.2.0 5524 115894 139856 153273 2 81 15289718 18432001 1885 130560 0 84379419 99.974 4920107 32685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:37:31] CVMFS is ok
[2025-11-25 01:37:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:37:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:37:31] Further information can be found at the LHC@home message board.
[2025-11-25 01:37:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:37:31] Checking for apptainer binary...
[2025-11-25 01:37:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:37:31] Running /usr/bin/apptainer --version
[2025-11-25 01:37:31] apptainer version 1.3.2-1.el7
[2025-11-25 01:37:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:37:32] c-206-5.aglt2.org
[2025-11-25 01:37:32] apptainer works
[2025-11-25 01:37:32] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:37:32] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:37:32] Starting ATLAS job with PandaID=6895417672
[2025-11-25 01:37:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:28:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:28:42] 2025-11-26 01:27:43,670 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 20:28:42] 2025-11-26 01:27:43,676 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2405.8333333333335
[2025-11-25 20:28:42] 2025-11-26 01:27:43,681 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895417672/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,682 | INFO     | extracted standard info from prmon json
[2025-11-25 20:28:42] 2025-11-26 01:27:43,682 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:28:42] 2025-11-26 01:27:43,682 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:28:42] 2025-11-26 01:27:43,709 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:28:42] 2025-11-26 01:27:43,711 | INFO     | sum of square deviations: 425228838185.88196
[2025-11-25 20:28:42] 2025-11-26 01:27:43,734 | INFO     | sum of deviations: 1749555283271.2786
[2025-11-25 20:28:42] 2025-11-26 01:27:43,734 | INFO     | mean x: 1764086545.5841584
[2025-11-25 20:28:42] 2025-11-26 01:27:43,734 | INFO     | mean y: 2867547.4248424843
[2025-11-25 20:28:42] 2025-11-26 01:27:43,734 | INFO     | intersect: -7255264213.209388
[2025-11-25 20:28:42] 2025-11-26 01:27:43,736 | INFO     | chi2: 6.038430793820739
[2025-11-25 20:28:42] 2025-11-26 01:27:43,737 | INFO     | sum of square deviations: 419513701061.6676
[2025-11-25 20:28:42] 2025-11-26 01:27:43,761 | INFO     | sum of deviations: 2090652499892.8394
[2025-11-25 20:28:42] 2025-11-26 01:27:43,761 | INFO     | mean x: 1764086393.0867994
[2025-11-25 20:28:42] 2025-11-26 01:27:43,761 | INFO     | mean y: 2876647.324593128
[2025-11-25 20:28:42] 2025-11-26 01:27:43,761 | INFO     | intersect: -8788472999.6604
[2025-11-25 20:28:42] 2025-11-26 01:27:43,762 | INFO     | chi2: 3.2706255424704698
[2025-11-25 20:28:42] 2025-11-26 01:27:43,762 | INFO     | current chi2=3.2706255424704698 (change=45.83649868410558 %)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,764 | INFO     | sum of square deviations: 413850006762.43726
[2025-11-25 20:28:42] 2025-11-26 01:27:43,787 | INFO     | sum of deviations: 2264568973883.0356
[2025-11-25 20:28:42] 2025-11-26 01:27:43,787 | INFO     | mean x: 1764086240.5894642
[2025-11-25 20:28:42] 2025-11-26 01:27:43,787 | INFO     | mean y: 2881328.6239782018
[2025-11-25 20:28:42] 2025-11-26 01:27:43,787 | INFO     | intersect: -9650120731.095835
[2025-11-25 20:28:42] 2025-11-26 01:27:43,788 | INFO     | chi2: 2.473776840819046
[2025-11-25 20:28:42] 2025-11-26 01:27:43,789 | INFO     | current chi2=2.473776840819046 (change=24.36380109260455 %)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,789 | INFO     | right removable region: 1100
[2025-11-25 20:28:42] 2025-11-26 01:27:43,790 | INFO     | sum of square deviations: 419513305171.6678
[2025-11-25 20:28:42] 2025-11-26 01:27:43,813 | INFO     | sum of deviations: 1464434736372.2449
[2025-11-25 20:28:42] 2025-11-26 01:27:43,813 | INFO     | mean x: 1764086698.0867994
[2025-11-25 20:28:42] 2025-11-26 01:27:43,813 | INFO     | mean y: 2875146.1745027127
[2025-11-25 20:28:42] 2025-11-26 01:27:43,813 | INFO     | intersect: -6155188988.6290045
[2025-11-25 20:28:42] 2025-11-26 01:27:43,814 | INFO     | chi2: 4.03923700082164
[2025-11-25 20:28:42] 2025-11-26 01:27:43,815 | INFO     | current chi2=4.03923700082164 (change=33.10783647706816 %)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,816 | INFO     | sum of square deviations: 413849484847.13934
[2025-11-25 20:28:42] 2025-11-26 01:27:43,839 | INFO     | sum of deviations: 1393400663624.2917
[2025-11-25 20:28:42] 2025-11-26 01:27:43,839 | INFO     | mean x: 1764086850.5858312
[2025-11-25 20:28:42] 2025-11-26 01:27:43,839 | INFO     | mean y: 2877058.377838329
[2025-11-25 20:28:42] 2025-11-26 01:27:43,839 | INFO     | intersect: -5936673136.314582
[2025-11-25 20:28:42] 2025-11-26 01:27:43,840 | INFO     | chi2: 3.9845538463454817
[2025-11-25 20:28:42] 2025-11-26 01:27:43,840 | INFO     | current chi2=3.9845538463454817 (change=1.353799107728379 %)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,840 | INFO     | left removable region: 20
[2025-11-25 20:28:42] 2025-11-26 01:27:43,841 | INFO     | sum of square deviations: 390617750861.98395
[2025-11-25 20:28:42] 2025-11-26 01:27:43,864 | INFO     | sum of deviations: 1842704882660.0718
[2025-11-25 20:28:42] 2025-11-26 01:27:43,864 | INFO     | mean x: 1764086820.0962963
[2025-11-25 20:28:42] 2025-11-26 01:27:43,864 | INFO     | mean y: 2894296.3935185187
[2025-11-25 20:28:42] 2025-11-26 01:27:43,864 | INFO     | intersect: -8319030116.038737
[2025-11-25 20:28:42] 2025-11-26 01:27:43,865 | INFO     | chi2: 0.29049396669557576
[2025-11-25 20:28:42] 2025-11-26 01:27:43,866 | INFO     | current memory leak: 4.72 B/s (using 1080 data points, chi2=0.29)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,866 | INFO     | could have reported an average CPU frequency of 2627 MHz (40 samples)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,866 | INFO     | ..............................
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . Timing measurements:
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . get job = 0 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . initial setup = 2 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . payload setup = 5 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . stage-in = 0 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . payload execution = 67764 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . stage-out = 4 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | . log creation = 0 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,867 | INFO     | ..............................
[2025-11-25 20:28:42] 2025-11-26 01:27:43,960 | INFO     | 
[2025-11-25 20:28:42] 2025-11-26 01:27:43,960 | INFO     | job summary report
[2025-11-25 20:28:42] 2025-11-26 01:27:43,966 | INFO     | --------------------------------------------------
[2025-11-25 20:28:42] 2025-11-26 01:27:43,966 | INFO     | PanDA job id: 6895417672
[2025-11-25 20:28:42] 2025-11-26 01:27:43,966 | INFO     | task id: 47556149
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | errors: (none)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | pilot state: finished 
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | transexitcode: 0
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | exeerrorcode: 0
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | exeerrordiag: 
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | exitcode: 0
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | exitmsg: OK
[2025-11-25 20:28:42] 2025-11-26 01:27:43,967 | INFO     | cpuconsumptiontime: 524153 s
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | nevents: 1000
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | neventsw: 0
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | pid: 10993
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | pgrp: 10993
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | corecount: 8
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | event service: False
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | sizes: {0: 2284139, 1: 2284338, 4: 2284600, 12: 2284628, 67773: 2340301, 67778: 2349484, 67784: 2349674}
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | --------------------------------------------------
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | 
[2025-11-25 20:28:42] 2025-11-26 01:27:43,968 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 20:28:42] 2025-11-26 01:27:43,986 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,986 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,986 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:28:42] 2025-11-26 01:27:43,989 | INFO     | job 6895417672 has completed (purged errors)
[2025-11-25 20:28:42] 2025-11-26 01:27:43,989 | INFO     | overall cleanup function is called
[2025-11-25 20:28:42] 2025-11-26 01:27:45,002 | INFO     | --- collectZombieJob: --- 10, [10993]
[2025-11-25 20:28:42] 2025-11-26 01:27:45,002 | INFO     | zombie collector waiting for pid 10993
[2025-11-25 20:28:42] 2025-11-26 01:27:45,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:28:42] 2025-11-26 01:27:45,003 | INFO     | collected zombie processes
[2025-11-25 20:28:42] 2025-11-26 01:27:45,003 | INFO     | will attempt to kill all subprocesses of pid=10993
[2025-11-25 20:28:42] 2025-11-26 01:27:45,172 | INFO     | process IDs to be killed: [10993] (in reverse order)
[2025-11-25 20:28:42] 2025-11-26 01:27:45,235 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:28:42] 2025-11-26 01:27:45,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:28:42] 2025-11-26 01:27:45,241 | INFO     | did not find any defunct processes belonging to 10993
[2025-11-25 20:28:42] 2025-11-26 01:27:45,247 | INFO     | did not find any defunct processes belonging to 10993
[2025-11-25 20:28:42] 2025-11-26 01:27:45,249 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:28:42] 2025-11-26 01:27:45,249 | INFO     | ready for new job
[2025-11-25 20:28:42] 2025-11-26 01:27:45,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:28:42] 2025-11-26 01:27:45,254 | INFO     | ***************************************
[2025-11-25 20:28:42] 2025-11-26 01:27:45,255 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:28:42] 2025-11-26 01:27:45,255 | INFO     | ***************************************
[2025-11-25 20:28:42] 2025-11-26 01:27:45,255 | INFO     | 
[2025-11-25 20:28:42] 2025-11-26 01:27:45,256 | INFO     | architecture information:
[2025-11-25 20:28:42] 2025-11-26 01:27:45,257 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:28:42] 2025-11-26 01:27:45,271 | INFO     | cat /etc/os-release:
[2025-11-25 20:28:42] NAME="CentOS Linux"
[2025-11-25 20:28:42] VERSION="7 (Core)"
[2025-11-25 20:28:42] ID="centos"
[2025-11-25 20:28:42] ID_LIKE="rhel fedora"
[2025-11-25 20:28:42] VERSION_ID="7"
[2025-11-25 20:28:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:28:42] ANSI_COLOR="0;31"
[2025-11-25 20:28:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:28:42] HOME_URL="https://www.centos.org/"
[2025-11-25 20:28:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:28:42] 
[2025-11-25 20:28:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:28:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:28:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:28:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:28:42] 
[2025-11-25 20:28:42] 2025-11-26 01:27:45,272 | INFO     | ***************************************
[2025-11-25 20:28:42] 2025-11-26 01:27:45,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 20:28:42] 2025-11-26 01:27:45,789 | INFO     | sufficient remaining disk space (24696061952 B)
[2025-11-25 20:28:42] 2025-11-26 01:27:45,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:28:42] 2025-11-26 01:27:45,789 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:28:42] 2025-11-26 01:27:45,789 | INFO     | update_server=False
[2025-11-25 20:28:42] 2025-11-26 01:27:45,790 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:28:42] 2025-11-26 01:27:45,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:28:42] 2025-11-26 01:27:45,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:28:42] 2025-11-26 01:27:45,818 | INFO     | all job control threads have been joined
[2025-11-25 20:28:42] 2025-11-26 01:27:45,901 | INFO     | all data control threads have been joined
[2025-11-25 20:28:42] 2025-11-26 01:27:45,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 20:28:42] 2025-11-26 01:27:45,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 20:28:42] 2025-11-26 01:27:45,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:28:42] 2025-11-26 01:27:45,907 | INFO     | will abort loop
[2025-11-25 20:28:42] 2025-11-26 01:27:46,795 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,795 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,824 | INFO     | [job] control thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,907 | INFO     | [data] control thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,912 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:46,932 | INFO     | [job] validate thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:47,117 | INFO     | all payload control threads have been joined
[2025-11-25 20:28:42] 2025-11-26 01:27:47,340 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:47,674 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:47,796 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:47,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:48,122 | INFO     | [payload] control thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:48,246 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:48,286 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:48,358 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:27:48,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:28:42] 2025-11-26 01:27:52,496 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:28:42] 2025-11-26 01:28:14,296 | INFO     | 67803s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 20:28:42] 2025-11-26 01:28:15,514 | INFO     | PID=4481 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 20:28:42] 2025-11-26 01:28:15,514 | INFO     | .. there are 3 such processes running
[2025-11-25 20:28:42] 2025-11-26 01:28:15,514 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:28:42] 2025-11-26 01:28:15,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:28:42] 2025-11-26 01:28:15,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:28:42] 2025-11-26 01:28:35,384 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:28:42] 2025-11-26 01:28:37,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139733932992320)>', '<ExcThread(monitor, started 139733195810560)>']
[2025-11-25 20:28:42] 2025-11-26 01:28:37,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:28:42] 2025-11-26 01:28:37,626 | INFO     | [monitor] control thread has ended
[2025-11-25 20:28:42] 2025-11-26 01:28:42,337 | INFO     | all workflow threads have been joined
[2025-11-25 20:28:42] 2025-11-26 01:28:42,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:28:42] 2025-11-26 01:28:42,337 | INFO     | traces error code: 0
[2025-11-25 20:28:42] 2025-11-26 01:28:42,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:28:42] 2025-11-26 01:28:42,427 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:28:42] 2025-11-26 01:28:42,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:28:42] 2025-11-26 01:28:42,432 [wrapper] pilotpid: 4481
[2025-11-25 20:28:42] 2025-11-26 01:28:42,435 [wrapper] Pilot exit status: 0
[2025-11-25 20:28:42] 2025-11-26 01:28:42,443 [wrapper] pandaids: 6895417672
[2025-11-25 20:28:42] 2025-11-26 01:28:42,477 [wrapper] cleanup supervisor_pilot 30536 4482
[2025-11-25 20:28:42] 2025-11-26 01:28:42,479 [wrapper] Test setup, not cleaning
[2025-11-25 20:28:42] 2025-11-26 01:28:42,482 [wrapper] apfmon messages muted
[2025-11-25 20:28:42] 2025-11-26 01:28:42,484 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:28:42] 2025-11-26 01:28:42,486 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:28:42]  *** Error codes and diagnostics ***
[2025-11-25 20:28:42]     "exeErrorCode": 0,
[2025-11-25 20:28:42]     "exeErrorDiag": "",
[2025-11-25 20:28:42]     "pilotErrorCode": 0,
[2025-11-25 20:28:42]     "pilotErrorDiag": "",
[2025-11-25 20:28:42]  *** Listing of results directory ***
[2025-11-25 20:28:42] total 1312096
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-25 20:28:42] -rwx------ 1 boincer umatlas     36292 Nov 24 03:11 runpilot2-wrapper.sh
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 03:11 queuedata.json
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:28:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:37 run_atlas
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:37 job.xml
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas 408420298 Nov 25 01:37 EVNT.47483658._001269.pool.root.1
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:37 start_atlas.sh
[2025-11-25 20:28:42] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:37 shared
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 01:37 input.tar.gz
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:37 boinc_lockfile
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 01:37 pandaJob.out
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas        57 Nov 25 01:37 setup.sh.local
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas    991801 Nov 25 01:37 agis_schedconf.cvmfs.json
[2025-11-25 20:28:42] drwx------ 5 boincer umatlas      4096 Nov 25 01:37 pilot3
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas       533 Nov 25 20:11 boinc_task_state.xml
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas      5952 Nov 25 20:21 init_data.xml
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas 907916507 Nov 25 20:26 HITS.47556149._002556.pool.root.1
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas      1066 Nov 25 20:27 memory_monitor_summary.json
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas   1516240 Nov 25 20:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas   2287102 Nov 25 20:27 log.47556149._002556.job.log.tgz.1
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas        95 Nov 25 20:27 pilot_heartbeat.json
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas      8659 Nov 25 20:27 heartbeat.json
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 20:28 boinc_mmap_file
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas        29 Nov 25 20:28 wrapper_checkpoint.txt
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas      5122 Nov 25 20:28 pilotlog.txt
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas   9376428 Nov 25 20:28 log.47556149._002556.job.log.1
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas       353 Nov 25 20:28 output.list
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas       620 Nov 25 20:28 runtime_log
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas  11683840 Nov 25 20:28 result.tar.gz
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 20:28 runtime_log.err
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas       667 Nov 25 20:28 GC9NDmGqgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPXLKDmZ77mJn.diag
[2025-11-25 20:28:42] -rw-r--r-- 1 boincer umatlas     21277 Nov 25 20:28 stderr.txt
[2025-11-25 20:28:42] HITS file was successfully produced:
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas 907916507 Nov 25 20:26 shared/HITS.pool.root.1
[2025-11-25 20:28:42]  *** Contents of shared directory: ***
[2025-11-25 20:28:42] total 1297500
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas 408420298 Nov 25 01:37 ATLAS.root_0
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:37 start_atlas.sh
[2025-11-25 20:28:42] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 01:37 input.tar.gz
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas 907916507 Nov 25 20:26 HITS.pool.root.1
[2025-11-25 20:28:42] -rw------- 1 boincer umatlas  11683840 Nov 25 20:28 result.tar.gz
20:28:43 (587): run_atlas exited; CPU time 523239.632974
20:28:43 (587): called boinc_finish(0)

</stderr_txt>
]]>

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