Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:48:42 (1136105): wrapper (7.7.26015): starting
21:48:42 (1136105): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:48:42] Arguments: --nthreads 8
[2025-11-24 21:48:42] Threads: 8
[2025-11-24 21:48:42] Checking for CVMFS
[2025-11-24 21:48:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:48:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:48:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:48:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:48:42] 2.11.3.0 2884895 26545 200832 153272 0 327 35843149 45568001 12830 130560 0 169767754 99.777 109065980 19497 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-24 21:48:42] CVMFS is ok
[2025-11-24 21:48:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:48:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:48:42] Further information can be found at the LHC@home message board.
[2025-11-24 21:48:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:48:42] Checking for apptainer binary...
[2025-11-24 21:48:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:48:42] Running /usr/bin/apptainer --version
[2025-11-24 21:48:42] apptainer version 1.4.1-1.el9
[2025-11-24 21:48:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:48:43] wns0017.triumf.lcg
[2025-11-24 21:48:43] apptainer works
[2025-11-24 21:48:43] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:48:43] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:48:43] Starting ATLAS job with PandaID=6896045953
[2025-11-24 21:48:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:56:24]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:56:24] 2025-11-25 05:55:51,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:56:24] 2025-11-25 05:55:51,364 | WARNING  | wrong length of table data, x=[1764049807.0, 1764049868.0, 1764049929.0, 1764049990.0], y=[1135.0, 619764.0, 372844.0, 607992.0] (must be same and length>=4)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . Timing measurements:
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . get job = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . initial setup = 3 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload setup = 17 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-in = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload execution = 228 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-out = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . log creation = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896045953/pilotlog.txt
[2025-11-24 21:56:24] 2025-11-25 05:55:51,446 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 21:56:24] - Log from pilotlog.txt -
[2025-11-24 21:56:24] 2025-11-25 05:55:51,361 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896045953/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | INFO     | extracted standard info from prmon json
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:56:24] 2025-11-25 05:55:51,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 21:56:24] 2025-11-25 05:55:51,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:56:24] 2025-11-25 05:55:51,364 | WARNING  | wrong length of table data, x=[1764049807.0, 1764049868.0, 1764049929.0, 1764049990.0], y=[1135.0, 619764.0, 372844.0, 607992.0] (must be same and length>=4)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . Timing measurements:
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . get job = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . initial setup = 3 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload setup = 17 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-in = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload execution = 228 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-out = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . log creation = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896045953/pilotlog.txt
[2025-11-24 21:56:24] 2025-11-25 05:55:51,447 | WARNING  | 
[2025-11-24 21:56:24] [begin log extracts]
[2025-11-24 21:56:24] - Log from pilotlog.txt -
[2025-11-24 21:56:24] 2025-11-25 05:55:51,361 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896045953/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | INFO     | extracted standard info from prmon json
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:56:24] 2025-11-25 05:55:51,362 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:56:24] 2025-11-25 05:55:51,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 21:56:24] 2025-11-25 05:55:51,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:56:24] 2025-11-25 05:55:51,364 | WARNING  | wrong length of table data, x=[1764049807.0, 1764049868.0, 1764049929.0, 1764049990.0], y=[1135.0, 619764.0, 372844.0, 607992.0] (must be same and length>=4)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . Timing measurements:
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . get job = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . initial setup = 3 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload setup = 17 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-in = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . payload execution = 228 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . stage-out = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | . log creation = 0 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,365 | INFO     | ..............................
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:56:24] 2025-11-25 05:55:51,366 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896045953/pilotlog.txt
[2025-11-24 21:56:24] [end log extracts]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,447 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,447 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 21:56:24] 2025-11-25 05:55:51,748 | INFO     | 
[2025-11-24 21:56:24] 2025-11-25 05:55:51,748 | INFO     | job summary report
[2025-11-24 21:56:24] 2025-11-25 05:55:51,748 | INFO     | --------------------------------------------------
[2025-11-24 21:56:24] 2025-11-25 05:55:51,748 | INFO     | PanDA job id: 6896045953
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | task id: 47556185
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 21:53:38,156 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | pilot state: failed 
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | transexitcode: 65
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | exeerrorcode: 65
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | exitcode: 65
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | cpuconsumptiontime: 56 s
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | nevents: 0
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | neventsw: 0
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | pid: 1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:51,749 | INFO     | pgrp: 1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | corecount: 8
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | event service: False
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | sizes: {0: 2284131, 1: 2284330, 12: 2284330, 18: 2284620, 23: 2284648, 249: 2310222, 250: 2314540, 376: 2314678}
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | --------------------------------------------------
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | 
[2025-11-24 21:56:24] 2025-11-25 05:55:51,750 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 21:56:24] 2025-11-25 05:55:51,769 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | job 6896045953 has completed (purged errors)
[2025-11-24 21:56:24] 2025-11-25 05:55:51,771 | INFO     | overall cleanup function is called
[2025-11-24 21:56:24] 2025-11-25 05:55:52,779 | INFO     | --- collectZombieJob: --- 10, [1146667]
[2025-11-24 21:56:24] 2025-11-25 05:55:52,779 | INFO     | zombie collector waiting for pid 1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:52,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:56:24] 2025-11-25 05:55:52,780 | INFO     | collected zombie processes
[2025-11-24 21:56:24] 2025-11-25 05:55:52,780 | INFO     | will attempt to kill all subprocesses of pid=1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:53,350 | INFO     | process IDs to be killed: [1146667] (in reverse order)
[2025-11-24 21:56:24] 2025-11-25 05:55:53,407 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:56:24] 2025-11-25 05:55:53,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:56:24] 2025-11-25 05:55:53,414 | INFO     | did not find any defunct processes belonging to 1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:53,421 | INFO     | did not find any defunct processes belonging to 1146667
[2025-11-24 21:56:24] 2025-11-25 05:55:53,422 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:56:24] 2025-11-25 05:55:53,422 | INFO     | ready for new job
[2025-11-24 21:56:24] 2025-11-25 05:55:53,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:56:24] 2025-11-25 05:55:53,424 | INFO     | ***************************************
[2025-11-24 21:56:24] 2025-11-25 05:55:53,429 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:56:24] 2025-11-25 05:55:53,429 | INFO     | ***************************************
[2025-11-24 21:56:24] 2025-11-25 05:55:53,429 | INFO     | 
[2025-11-24 21:56:24] 2025-11-25 05:55:53,430 | INFO     | architecture information:
[2025-11-24 21:56:24] 2025-11-25 05:55:53,431 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:56:24] 2025-11-25 05:55:53,446 | INFO     | cat /etc/os-release:
[2025-11-24 21:56:24] NAME="CentOS Linux"
[2025-11-24 21:56:24] VERSION="7 (Core)"
[2025-11-24 21:56:24] ID="centos"
[2025-11-24 21:56:24] ID_LIKE="rhel fedora"
[2025-11-24 21:56:24] VERSION_ID="7"
[2025-11-24 21:56:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:56:24] ANSI_COLOR="0;31"
[2025-11-24 21:56:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:56:24] HOME_URL="https://www.centos.org/"
[2025-11-24 21:56:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:56:24] 
[2025-11-24 21:56:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:56:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:56:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:56:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:56:24] 
[2025-11-24 21:56:24] 2025-11-25 05:55:53,446 | INFO     | ***************************************
[2025-11-24 21:56:24] 2025-11-25 05:55:53,949 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 21:56:24] 2025-11-25 05:55:53,992 | INFO     | sufficient remaining disk space (1023671271424 B)
[2025-11-24 21:56:24] 2025-11-25 05:55:53,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:56:24] 2025-11-25 05:55:53,993 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:56:24] 2025-11-25 05:55:53,993 | INFO     | update_server=False
[2025-11-24 21:56:24] 2025-11-25 05:55:53,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:56:24] 2025-11-25 05:55:54,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:56:24] 2025-11-25 05:55:54,003 | INFO     | aborting loop
[2025-11-24 21:56:24] 2025-11-25 05:55:54,033 | INFO     | all payload control threads have been joined
[2025-11-24 21:56:24] 2025-11-25 05:55:54,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:56:24] 2025-11-25 05:55:54,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:56:24] 2025-11-25 05:55:54,924 | INFO     | all data control threads have been joined
[2025-11-24 21:56:24] 2025-11-25 05:55:54,999 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,009 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,039 | INFO     | [payload] control thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,176 | INFO     | all job control threads have been joined
[2025-11-24 21:56:24] 2025-11-25 05:55:55,305 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,643 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,819 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,930 | INFO     | [data] control thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:55,983 | INFO     | [job] validate thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,108 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,182 | INFO     | [job] control thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,404 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,522 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:56,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:56:24] 2025-11-25 05:55:57,769 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:55:58,063 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:56:24] 2025-11-25 05:56:03,355 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:56:24] 2025-11-25 05:56:04,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513076582208)>', '<ExcThread(monitor, started 140512757520128)>']
[2025-11-24 21:56:24] 2025-11-25 05:56:09,698 | INFO     | all workflow threads have been joined
[2025-11-24 21:56:24] 2025-11-25 05:56:09,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:56:24] 2025-11-25 05:56:09,701 | INFO     | traces error code: 0
[2025-11-24 21:56:24] 2025-11-25 05:56:09,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:56:24] 2025-11-25 05:56:23,811 | INFO     | PID=1139777 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 21:56:24] 2025-11-25 05:56:23,811 | INFO     | .. there are 19 such processes running
[2025-11-24 21:56:24] 2025-11-25 05:56:23,812 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:56:24] 2025-11-25 05:56:23,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:56:24] 2025-11-25 05:56:23,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:56:24] 2025-11-25 05:56:23,812 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:56:24] 2025-11-25 05:56:23,812 | INFO     | [monitor] control thread has ended
[2025-11-24 21:56:24] 2025-11-25 05:56:23,921 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:56:24] 2025-11-25 05:56:23,923 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:56:24] 2025-11-25 05:56:23,925 [wrapper] pilotpid: 1139777
[2025-11-24 21:56:24] 2025-11-25 05:56:23,926 [wrapper] Pilot exit status: 0
[2025-11-24 21:56:24] 2025-11-25 05:56:23,936 [wrapper] pandaids: 6896045953
[2025-11-24 21:56:24] 2025-11-25 05:56:23,969 [wrapper] cleanup supervisor_pilot 1139783 1139778
[2025-11-24 21:56:24] 2025-11-25 05:56:23,993 [wrapper] Test setup, not cleaning
[2025-11-24 21:56:24] 2025-11-25 05:56:24,022 [wrapper] apfmon messages muted
[2025-11-24 21:56:24] 2025-11-25 05:56:24,042 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:56:24] 2025-11-25 05:56:24,049 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:56:24]  *** Error codes and diagnostics ***
[2025-11-24 21:56:24]     "exeErrorCode": 65,
[2025-11-24 21:56:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 21:56:24]     "pilotErrorCode": 1305,
[2025-11-24 21:56:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 21:56:24]  *** Listing of results directory ***
[2025-11-24 21:56:24] total 404804
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc    576529 Nov 24 11:02 pilot3.tar.gz
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc      5112 Nov 24 11:11 queuedata.json
[2025-11-24 21:56:24] -rwx------. 1 boinc boinc     36292 Nov 24 11:12 runpilot2-wrapper.sh
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc       100 Nov 24 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:56:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 21:48 run_atlas
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc       105 Nov 24 21:48 job.xml
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc 410263963 Nov 24 21:48 EVNT.47483658._004241.pool.root.1
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc      6445 Nov 24 21:48 init_data.xml
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:48 start_atlas.sh
[2025-11-24 21:56:24] drwxrwx--x. 2 boinc boinc      4096 Nov 24 21:48 shared
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc    590103 Nov 24 21:48 input.tar.gz
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc         0 Nov 24 21:48 boinc_lockfile
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc      2783 Nov 24 21:48 pandaJob.out
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc    991801 Nov 24 21:48 agis_schedconf.cvmfs.json
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc   1516227 Nov 24 21:49 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:56:24] drwx------. 5 boinc boinc      4096 Nov 24 21:49 pilot3
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc       524 Nov 24 21:53 boinc_task_state.xml
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc       993 Nov 24 21:53 memory_monitor_summary.json
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc     51577 Nov 24 21:53 log.47556185._000050.job.log.tgz.1
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc     10330 Nov 24 21:55 heartbeat.json
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc      8192 Nov 24 21:56 boinc_mmap_file
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc        23 Nov 24 21:56 wrapper_checkpoint.txt
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc        95 Nov 24 21:56 pilot_heartbeat.json
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc       823 Nov 24 21:56 pilotlog.txt
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc    117347 Nov 24 21:56 log.47556185._000050.job.log.1
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc       186 Nov 24 21:56 output.list
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc       620 Nov 24 21:56 runtime_log
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc    194560 Nov 24 21:56 result.tar.gz
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc       645 Nov 24 21:56 XTfNDmnArh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhAJKDm2vWB9n.diag
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc      8634 Nov 24 21:56 runtime_log.err
[2025-11-24 21:56:24] -rw-r--r--. 1 boinc boinc     22625 Nov 24 21:56 stderr.txt
[2025-11-24 21:56:24] No HITS result produced
[2025-11-24 21:56:24]  *** Contents of shared directory: ***
[2025-11-24 21:56:24] total 401444
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc 410263963 Nov 24 21:48 ATLAS.root_0
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:48 start_atlas.sh
[2025-11-24 21:56:24] -rw-r--r--. 2 boinc boinc    590103 Nov 24 21:48 input.tar.gz
[2025-11-24 21:56:24] -rw-------. 1 boinc boinc    194560 Nov 24 21:56 result.tar.gz
21:56:26 (1136105): run_atlas exited; CPU time 59.081141
21:56:26 (1136105): called boinc_finish(0)

</stderr_txt>
]]>

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