Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:11:36 (14927): wrapper (7.7.26015): starting
01:11:36 (14927): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:11:36] Arguments: --nthreads 8
[2025-11-25 01:11:36] Threads: 8
[2025-11-25 01:11:36] Checking for CVMFS
[2025-11-25 01:11:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:11:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:11:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:11:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:11:36] 2.11.2.0 2860 63897 80844 153272 2 82 15554670 20275200 1 130560 0 15400899 99.829 3920282 30347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:11:36] CVMFS is ok
[2025-11-25 01:11:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:11:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:11:36] Further information can be found at the LHC@home message board.
[2025-11-25 01:11:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:11:36] Checking for apptainer binary...
[2025-11-25 01:11:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:11:36] Running /usr/bin/apptainer --version
[2025-11-25 01:11:36] apptainer version 1.3.2-1.el7
[2025-11-25 01:11:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:11:38] c-204-9.aglt2.org
[2025-11-25 01:11:38] apptainer works
[2025-11-25 01:11:38] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:11:38] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:11:38] Starting ATLAS job with PandaID=6894053154
[2025-11-25 01:11:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:51:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:51:24] 2025-11-25 09:50:50,338 | INFO     | monitor loop #965: job 0:6894053154 is in state 'finished'
[2025-11-25 04:51:24] 2025-11-25 09:50:50,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,359 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 04:51:24] 2025-11-25 09:50:51,362 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,398 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894053154/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,399 | INFO     | extracted standard info from prmon json
[2025-11-25 04:51:24] 2025-11-25 09:50:51,399 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:51:24] 2025-11-25 09:50:51,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:51:24] 2025-11-25 09:50:51,399 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 04:51:24] 2025-11-25 09:50:51,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 04:51:24] 2025-11-25 09:50:51,404 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:51:24] 2025-11-25 09:50:51,404 | INFO     | sum of square deviations: 3081657780.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,406 | INFO     | sum of deviations: 20578367018.999985
[2025-11-25 04:51:24] 2025-11-25 09:50:51,406 | INFO     | mean x: 1764057677.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,406 | INFO     | mean y: 2527764.8046511626
[2025-11-25 04:51:24] 2025-11-25 09:50:51,406 | INFO     | intersect: -11777309229.29225
[2025-11-25 04:51:24] 2025-11-25 09:50:51,406 | INFO     | chi2: 2.514438562130343
[2025-11-25 04:51:24] 2025-11-25 09:50:51,407 | INFO     | sum of square deviations: 2871616632.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,408 | INFO     | sum of deviations: 34646265830.99999
[2025-11-25 04:51:24] 2025-11-25 09:50:51,408 | INFO     | mean x: 1764057524.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,408 | INFO     | mean y: 2537777.9523809524
[2025-11-25 04:51:24] 2025-11-25 09:50:51,408 | INFO     | intersect: -21280945972.381687
[2025-11-25 04:51:24] 2025-11-25 09:50:51,409 | INFO     | chi2: 1.7297272665588326
[2025-11-25 04:51:24] 2025-11-25 09:50:51,409 | INFO     | current chi2=1.7297272665588326 (change=31.208211144625004 %)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,409 | INFO     | sum of square deviations: 2671343110.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,410 | INFO     | sum of deviations: 33798283419.999954
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | mean x: 1764057372.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | mean y: 2537132.1658536587
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | intersect: -22316614160.98132
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | chi2: 1.730743210089852
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | current chi2=1.730743210089852 (change=-0.05873431902595093 %)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,411 | INFO     | right removable region: 204
[2025-11-25 04:51:24] 2025-11-25 09:50:51,412 | INFO     | sum of square deviations: 2871616632.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,413 | INFO     | sum of deviations: -19736142642.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,413 | INFO     | mean x: 1764057829.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,413 | INFO     | mean y: 2556816.0761904763
[2025-11-25 04:51:24] 2025-11-25 09:50:51,413 | INFO     | intersect: 12126632348.205536
[2025-11-25 04:51:24] 2025-11-25 09:50:51,414 | INFO     | chi2: 0.8507297056647906
[2025-11-25 04:51:24] 2025-11-25 09:50:51,414 | INFO     | current chi2=0.8507297056647906 (change=66.16621624892616 %)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,414 | INFO     | sum of square deviations: 2671343110.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | sum of deviations: -23748489866.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | mean x: 1764057982.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | mean y: 2559835.882926829
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | intersect: 15685200134.591473
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | chi2: 0.8211433802247645
[2025-11-25 04:51:24] 2025-11-25 09:50:51,416 | INFO     | current chi2=0.8211433802247645 (change=3.4777585927725694 %)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,417 | INFO     | left removable region: 20
[2025-11-25 04:51:24] 2025-11-25 09:50:51,417 | INFO     | sum of square deviations: 1931608310.0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,418 | INFO     | sum of deviations: -8660019665.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,418 | INFO     | mean x: 1764057951.5
[2025-11-25 04:51:24] 2025-11-25 09:50:51,418 | INFO     | mean y: 2570963.527173913
[2025-11-25 04:51:24] 2025-11-25 09:50:51,418 | INFO     | intersect: 7911408625.895506
[2025-11-25 04:51:24] 2025-11-25 09:50:51,419 | INFO     | chi2: 0.012555733704286169
[2025-11-25 04:51:24] 2025-11-25 09:50:51,419 | INFO     | current memory leak: -4.48 B/s (using 184 data points, chi2=0.01)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,419 | INFO     | could have reported an average CPU frequency of 2056 MHz (11 samples)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,419 | INFO     | ..............................
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . Timing measurements:
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . get job = 0 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . initial setup = 2 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . payload setup = 10 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . stage-in = 0 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . payload execution = 13093 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . stage-out = 2 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,420 | INFO     | . log creation = 0 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,421 | INFO     | ..............................
[2025-11-25 04:51:24] 2025-11-25 09:50:51,692 | INFO     | 
[2025-11-25 04:51:24] 2025-11-25 09:50:51,692 | INFO     | job summary report
[2025-11-25 04:51:24] 2025-11-25 09:50:51,692 | INFO     | --------------------------------------------------
[2025-11-25 04:51:24] 2025-11-25 09:50:51,693 | INFO     | PanDA job id: 6894053154
[2025-11-25 04:51:24] 2025-11-25 09:50:51,693 | INFO     | task id: 47523618
[2025-11-25 04:51:24] 2025-11-25 09:50:51,693 | INFO     | errors: (none)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,693 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:51:24] 2025-11-25 09:50:51,693 | INFO     | pilot state: finished 
[2025-11-25 04:51:24] 2025-11-25 09:50:51,694 | INFO     | transexitcode: 0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,694 | INFO     | exeerrorcode: 0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,694 | INFO     | exeerrordiag: 
[2025-11-25 04:51:24] 2025-11-25 09:50:51,694 | INFO     | exitcode: 0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,695 | INFO     | exitmsg: OK
[2025-11-25 04:51:24] 2025-11-25 09:50:51,695 | INFO     | cpuconsumptiontime: 100069 s
[2025-11-25 04:51:24] 2025-11-25 09:50:51,695 | INFO     | nevents: 400
[2025-11-25 04:51:24] 2025-11-25 09:50:51,695 | INFO     | neventsw: 0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,695 | INFO     | pid: 25121
[2025-11-25 04:51:24] 2025-11-25 09:50:51,696 | INFO     | pgrp: 25121
[2025-11-25 04:51:24] 2025-11-25 09:50:51,696 | INFO     | corecount: 8
[2025-11-25 04:51:24] 2025-11-25 09:50:51,696 | INFO     | event service: False
[2025-11-25 04:51:24] 2025-11-25 09:50:51,696 | INFO     | sizes: {0: 2283773, 1: 2283972, 6: 2284234, 11: 2284262, 13107: 2314398, 13109: 2323401, 13112: 2323585, 13118: 2323779}
[2025-11-25 04:51:24] 2025-11-25 09:50:51,697 | INFO     | --------------------------------------------------
[2025-11-25 04:51:24] 2025-11-25 09:50:51,697 | INFO     | 
[2025-11-25 04:51:24] 2025-11-25 09:50:51,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 04:51:24] 2025-11-25 09:50:51,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,728 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,731 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,731 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,731 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,731 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,733 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,733 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,733 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:51:24] 2025-11-25 09:50:51,734 | INFO     | job 6894053154 has completed (purged errors)
[2025-11-25 04:51:24] 2025-11-25 09:50:51,734 | INFO     | overall cleanup function is called
[2025-11-25 04:51:24] 2025-11-25 09:50:52,743 | INFO     | --- collectZombieJob: --- 10, [25121]
[2025-11-25 04:51:24] 2025-11-25 09:50:52,743 | INFO     | zombie collector waiting for pid 25121
[2025-11-25 04:51:24] 2025-11-25 09:50:52,744 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:51:24] 2025-11-25 09:50:52,744 | INFO     | collected zombie processes
[2025-11-25 04:51:24] 2025-11-25 09:50:52,744 | INFO     | will attempt to kill all subprocesses of pid=25121
[2025-11-25 04:51:24] 2025-11-25 09:50:52,865 | INFO     | process IDs to be killed: [25121] (in reverse order)
[2025-11-25 04:51:24] 2025-11-25 09:50:52,921 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:51:24] 2025-11-25 09:50:52,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:51:24] 2025-11-25 09:50:52,928 | INFO     | did not find any defunct processes belonging to 25121
[2025-11-25 04:51:24] 2025-11-25 09:50:52,932 | INFO     | did not find any defunct processes belonging to 25121
[2025-11-25 04:51:24] 2025-11-25 09:50:52,935 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:51:24] 2025-11-25 09:50:52,936 | INFO     | ready for new job
[2025-11-25 04:51:24] 2025-11-25 09:50:52,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:51:24] 2025-11-25 09:50:52,938 | INFO     | ***************************************
[2025-11-25 04:51:24] 2025-11-25 09:50:52,938 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:51:24] 2025-11-25 09:50:52,938 | INFO     | ***************************************
[2025-11-25 04:51:24] 2025-11-25 09:50:52,938 | INFO     | 
[2025-11-25 04:51:24] 2025-11-25 09:50:52,939 | INFO     | architecture information:
[2025-11-25 04:51:24] 2025-11-25 09:50:52,940 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:51:24] 2025-11-25 09:50:52,958 | INFO     | cat /etc/os-release:
[2025-11-25 04:51:24] NAME="CentOS Linux"
[2025-11-25 04:51:24] VERSION="7 (Core)"
[2025-11-25 04:51:24] ID="centos"
[2025-11-25 04:51:24] ID_LIKE="rhel fedora"
[2025-11-25 04:51:24] VERSION_ID="7"
[2025-11-25 04:51:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:51:24] ANSI_COLOR="0;31"
[2025-11-25 04:51:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:51:24] HOME_URL="https://www.centos.org/"
[2025-11-25 04:51:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:51:24] 
[2025-11-25 04:51:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:51:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:51:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:51:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:51:24] 
[2025-11-25 04:51:24] 2025-11-25 09:50:52,959 | INFO     | ***************************************
[2025-11-25 04:51:24] 2025-11-25 09:50:53,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 04:51:24] 2025-11-25 09:50:53,484 | INFO     | sufficient remaining disk space (18301845504 B)
[2025-11-25 04:51:24] 2025-11-25 09:50:53,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:51:24] 2025-11-25 09:50:53,485 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:51:24] 2025-11-25 09:50:53,485 | INFO     | update_server=False
[2025-11-25 04:51:24] 2025-11-25 09:50:53,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:51:24] 2025-11-25 09:50:53,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:51:24] 2025-11-25 09:50:53,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:51:24] 2025-11-25 09:50:53,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:51:24] 2025-11-25 09:50:53,847 | INFO     | aborting loop
[2025-11-25 04:51:24] 2025-11-25 09:50:54,120 | INFO     | all payload control threads have been joined
[2025-11-25 04:51:24] 2025-11-25 09:50:54,329 | INFO     | all job control threads have been joined
[2025-11-25 04:51:24] 2025-11-25 09:50:54,491 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:54,492 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:54,518 | INFO     | all data control threads have been joined
[2025-11-25 04:51:24] 2025-11-25 09:50:54,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:54,852 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,054 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,126 | INFO     | [payload] control thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,144 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,335 | INFO     | [job] control thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,522 | INFO     | [data] control thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,727 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,759 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,835 | INFO     | [job] validate thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:55,913 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:56,080 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:50:56,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:51:24] 2025-11-25 09:51:00,123 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:51:24] 2025-11-25 09:51:17,628 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:51:24] 2025-11-25 09:51:18,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139785934006080)>', '<ExcThread(monitor, started 139785280681728)>']
[2025-11-25 04:51:24] 2025-11-25 09:51:23,073 | INFO     | PID=18678 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 04:51:24] 2025-11-25 09:51:23,073 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:51:24] 2025-11-25 09:51:23,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:51:24] 2025-11-25 09:51:23,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:51:24] 2025-11-25 09:51:23,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:51:24] 2025-11-25 09:51:23,074 | INFO     | [monitor] control thread has ended
[2025-11-25 04:51:24] 2025-11-25 09:51:23,659 | INFO     | all workflow threads have been joined
[2025-11-25 04:51:24] 2025-11-25 09:51:23,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:51:24] 2025-11-25 09:51:23,665 | INFO     | traces error code: 0
[2025-11-25 04:51:24] 2025-11-25 09:51:23,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:51:24] 2025-11-25 09:51:23,782 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:51:24] 2025-11-25 09:51:23,787 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:51:24] 2025-11-25 09:51:23,792 [wrapper] pilotpid: 18678
[2025-11-25 04:51:24] 2025-11-25 09:51:23,797 [wrapper] Pilot exit status: 0
[2025-11-25 04:51:24] 2025-11-25 09:51:23,814 [wrapper] pandaids: 6894053154
[2025-11-25 04:51:24] 2025-11-25 09:51:23,859 [wrapper] cleanup supervisor_pilot 19144 18679
[2025-11-25 04:51:24] 2025-11-25 09:51:23,864 [wrapper] Test setup, not cleaning
[2025-11-25 04:51:24] 2025-11-25 09:51:23,869 [wrapper] apfmon messages muted
[2025-11-25 04:51:24] 2025-11-25 09:51:23,873 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:51:24] 2025-11-25 09:51:23,877 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:51:24]  *** Error codes and diagnostics ***
[2025-11-25 04:51:24]     "exeErrorCode": 0,
[2025-11-25 04:51:24]     "exeErrorDiag": "",
[2025-11-25 04:51:24]     "pilotErrorCode": 0,
[2025-11-25 04:51:24]     "pilotErrorDiag": "",
[2025-11-25 04:51:24]  *** Listing of results directory ***
[2025-11-25 04:51:24] total 599648
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 16:23 pilot3.tar.gz
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 16:29 queuedata.json
[2025-11-25 04:51:24] -rwx------ 1 boincer umatlas     36292 Nov 23 16:31 runpilot2-wrapper.sh
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:51:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:11 run_atlas
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:11 job.xml
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas 306029121 Nov 25 01:11 EVNT.47523616._000004.pool.root.1
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:11 start_atlas.sh
[2025-11-25 04:51:24] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:11 shared
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas    589955 Nov 25 01:11 input.tar.gz
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:11 boinc_lockfile
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas      2612 Nov 25 01:11 pandaJob.out
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas        57 Nov 25 01:11 setup.sh.local
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas    991801 Nov 25 01:11 agis_schedconf.cvmfs.json
[2025-11-25 04:51:24] drwx------ 5 boincer umatlas      4096 Nov 25 01:11 pilot3
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas      5910 Nov 25 04:45 init_data.xml
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas 299543290 Nov 25 04:49 HITS.47523618._000100.pool.root.1
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas       532 Nov 25 04:49 boinc_task_state.xml
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas      1056 Nov 25 04:50 memory_monitor_summary.json
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas   1516240 Nov 25 04:50 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas    460201 Nov 25 04:50 log.47523618._000100.job.log.tgz.1
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas      7846 Nov 25 04:50 heartbeat.json
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas        29 Nov 25 04:51 wrapper_checkpoint.txt
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 04:51 boinc_mmap_file
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas        95 Nov 25 04:51 pilot_heartbeat.json
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas      4746 Nov 25 04:51 pilotlog.txt
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas   1816192 Nov 25 04:51 log.47523618._000100.job.log.1
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas       357 Nov 25 04:51 output.list
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas       620 Nov 25 04:51 runtime_log
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas   2293760 Nov 25 04:51 result.tar.gz
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 04:51 runtime_log.err
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas       662 Nov 25 04:51 JODMDmqqWh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCCLKDm7kK5Nm.diag
[2025-11-25 04:51:24] -rw-r--r-- 1 boincer umatlas     21199 Nov 25 04:51 stderr.txt
[2025-11-25 04:51:24] HITS file was successfully produced:
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas 299543290 Nov 25 04:49 shared/HITS.pool.root.1
[2025-11-25 04:51:24]  *** Contents of shared directory: ***
[2025-11-25 04:51:24] total 594224
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas 306029121 Nov 25 01:11 ATLAS.root_0
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:11 start_atlas.sh
[2025-11-25 04:51:24] -rw-r--r-- 2 boincer umatlas    589955 Nov 25 01:11 input.tar.gz
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas 299543290 Nov 25 04:49 HITS.pool.root.1
[2025-11-25 04:51:24] -rw------- 1 boincer umatlas   2293760 Nov 25 04:51 result.tar.gz
04:51:25 (14927): run_atlas exited; CPU time 99994.294293
04:51:25 (14927): called boinc_finish(0)

</stderr_txt>
]]>

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