Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 15:29:44 (1823784): vboxwrapper version 26210
2025-11-25 15:29:44 (1823784): BOINC client version: 8.2.4
2025-11-25 15:29:44 (1823784): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-11-25 15:29:44 (1823784): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 15:29:45 (1823784): Create VM. (boinc_6304d50843549ad7, slot#11)
2025-11-25 15:29:45 (1823784): Setting Memory Size for VM. (4800MB)
2025-11-25 15:29:45 (1823784): Setting CPU Count for VM. (8)
2025-11-25 15:29:45 (1823784): Setting Chipset Options for VM.
2025-11-25 15:29:45 (1823784): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 15:29:45 (1823784): Setting Boot Options for VM.
2025-11-25 15:29:45 (1823784): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 15:29:46 (1823784): Enabling VM Network Access.
2025-11-25 15:29:46 (1823784): Disabling USB Support for VM.
2025-11-25 15:29:46 (1823784): Disabling COM Port Support for VM.
2025-11-25 15:29:46 (1823784): Disabling LPT Port Support for VM.
2025-11-25 15:29:46 (1823784): Disabling Audio Support for VM.
2025-11-25 15:29:46 (1823784): Disabling Clipboard Support for VM.
2025-11-25 15:29:46 (1823784): Disabling Drag and Drop Support for VM.
2025-11-25 15:29:46 (1823784): Adding storage controller(s) to VM.
2025-11-25 15:29:47 (1823784): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 15:29:47 (1823784): Adding VirtualBox Guest Additions to VM.
2025-11-25 15:29:47 (1823784): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 15:29:47 (1823784): forwarding host port 48357 to guest port 80
2025-11-25 15:29:47 (1823784): Enabling remote desktop for VM.
2025-11-25 15:29:47 (1823784): Enabling shared directory for VM.
2025-11-25 15:29:48 (1823784): Starting VM using VBoxManage interface. (boinc_6304d50843549ad7, slot#11)
2025-11-25 15:29:49 (1823784): Successfully started VM. (PID = '1824337')
2025-11-25 15:29:49 (1823784): Reporting VM Process ID to BOINC.
2025-11-25 15:29:49 (1823784): Guest Log: BIOS: VirtualBox 7.0.20
2025-11-25 15:29:49 (1823784): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 15:29:49 (1823784): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 15:29:49 (1823784): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 15:29:49 (1823784): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 15:29:49 (1823784): Detected: Web Application Enabled (http://localhost:48357)
2025-11-25 15:29:49 (1823784): Detected: Remote Desktop Enabled (localhost:46915)
2025-11-25 15:29:49 (1823784): Preference change detected
2025-11-25 15:29:49 (1823784): Setting CPU throttle for VM. (100%)
2025-11-25 15:29:49 (1823784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 15:29:51 (1823784): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 15:29:51 (1823784): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 15:29:54 (1823784): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 15:29:54 (1823784): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 15:29:54 (1823784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 15:30:00 (1823784): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 15:30:00 (1823784): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 15:30:05 (1823784): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000132 main     Log opened 2025-11-25T14:30:03.519250000Z
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000214 main     OS Product: Linux
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000234 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000248 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000262 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000263 main     Process ID: 1370
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000263 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 15:30:05 (1823784): Guest Log: 00:00:00.000980 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 15:30:06 (1823784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 15:30:06 (1823784): Guest Log: [INFO] Mounting shared directory
2025-11-25 15:30:06 (1823784): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 15:30:07 (1823784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 15:30:07 (1823784): Guest Log: [INFO] Detected branch: prod
2025-11-25 15:30:08 (1823784): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 15:30:08 (1823784): Guest Log: Copying input files
2025-11-25 15:30:09 (1823784): Guest Log: Copied input files into RunAtlas.
2025-11-25 15:30:09 (1823784): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 15:30:09 (1823784): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 15:30:09 (1823784): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 15:30:09 (1823784): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 15:30:16 (1823784): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 15:30:16 (1823784): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 15:30:16 (1823784): Guest Log: 2.6.3.0 1646 0 29988 153285 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 15:30:17 (1823784): Guest Log: copied the webapp to /var/www
2025-11-25 15:30:17 (1823784): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 15:30:17 (1823784): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 15:30:17 (1823784): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 15:30:17 (1823784): Guest Log:  *** Starting ATLAS job. (PandaID=6895336348 taskID=47556137) ***
2025-11-25 17:08:50 (1823784): Status Report: Elapsed Time: '6000.000000'
2025-11-25 17:08:50 (1823784): Status Report: CPU Time: '43581.960000'
2025-11-25 17:29:59 (1823784): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 19:47:53 (1823784): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 19:47:59 (1823784): Guest Log: 02:00:01.504388 timesync vgsvcTimeSyncWorker: Radical host time change: 8 283 497 000 000ns (HostNow=1 764 096 478 503 000 000 ns HostLast=1 764 088 195 006 000 000 ns)
2025-11-25 19:48:09 (1823784): Guest Log: 02:00:11.505545 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 283 527 741 000ns (GuestNow=1 764 096 488 527 519 000 ns GuestLast=1 764 088 204 999 778 000 ns fSetTimeLastLoop=true )
2025-11-25 21:05:46 (1823784): Status Report: Elapsed Time: '12000.000000'
2025-11-25 21:05:46 (1823784): Status Report: CPU Time: '88983.330000'
2025-11-25 22:44:47 (1823784): Status Report: Elapsed Time: '18000.000000'
2025-11-25 22:44:47 (1823784): Status Report: CPU Time: '134535.070000'
2025-11-25 23:44:09 (1823784): Guest Log:  *** Job finished ***
2025-11-25 23:44:09 (1823784): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:43:46,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:43:50,747 | INFO     | [data] queue_monitor thread has finished
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:01,573 | INFO     | [monitor] cgroup control has ended
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:02,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310241679168)>', '<ExcThread(monitor, started 140309518341888)>']
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:03,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:03,876 | INFO     | [monitor] control thread has ended
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:07,954 | INFO     | all workflow threads have been joined
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:07,955 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:07,955 | INFO     | traces error code: 0
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:07,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,042 [wrapper] ==== pilot stdout END ====
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,048 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,053 [wrapper] pilotpid: 6068
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,058 [wrapper] Pilot exit status: 0
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,075 [wrapper] pandaids: 6895336348
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,103 [wrapper] cleanup supervisor_pilot 27642 6069
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,106 [wrapper] Test setup, not cleaning
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,114 [wrapper] apfmon messages muted
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,117 [wrapper] ==== wrapper stdout END ====
2025-11-25 23:44:09 (1823784): Guest Log: 2025-11-25 22:44:08,120 [wrapper] ==== wrapper stderr END ====
2025-11-25 23:44:09 (1823784): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 23:44:09 (1823784): Guest Log:     "exeErrorCode": 0,
2025-11-25 23:44:09 (1823784): Guest Log:     "exeErrorDiag": "",
2025-11-25 23:44:09 (1823784): Guest Log:     "pilotErrorCode": 0,
2025-11-25 23:44:09 (1823784): Guest Log:     "pilotErrorDiag": "",
2025-11-25 23:44:09 (1823784): Guest Log:  *** Listing of results directory ***
2025-11-25 23:44:09 (1823784): Guest Log: total 923452
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 05:12 pilot3.tar.gz
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 05:14 queuedata.json
2025-11-25 23:44:09 (1823784): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 05:15 runpilot2-wrapper.sh
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas    590100 Nov 25 14:30 input.tar.gz
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas      8946 Nov 25 14:30 init_data.xml
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 25 14:30 start_atlas.sh
2025-11-25 23:44:09 (1823784): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 14:30 EVNT.47483658._000275.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 25 14:30 pandaJob.out
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas    991909 Nov 25 14:30 agis_schedconf.cvmfs.json
2025-11-25 23:44:09 (1823784): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 14:30 pilot3
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas 932754239 Nov 25 22:43 HITS.47556137._002718.pool.root.1
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas        97 Nov 25 22:43 pilot_heartbeat.json
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 25 22:43 memory_monitor_summary.json
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 22:43 agis_ddmendpoints.agis.ALL.json
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas   1660218 Nov 25 22:43 log.47556137._002718.job.log.tgz.1
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas      8632 Nov 25 22:43 heartbeat.json
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 25 22:44 pilotlog.txt
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas   2846517 Nov 25 22:44 log.47556137._002718.job.log.1
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 22:44 output.list
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 22:44 runtime_log
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas   4526080 Nov 25 22:44 result.tar.gz
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas       655 Nov 25 22:44 uLgKDmh9ug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmByHKDmttg7rm.diag
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 atlas atlas      8741 Nov 25 22:44 runtime_log.err
2025-11-25 23:44:09 (1823784): Guest Log: Looking for outputfile HITS.47556137._002718.pool.root.1
2025-11-25 23:44:09 (1823784): Guest Log: HITS file was successfully produced
2025-11-25 23:44:09 (1823784): Guest Log: -rw-------. 1 atlas atlas 932754239 Nov 25 22:43 /home/atlas/RunAtlas/HITS.47556137._002718.pool.root.1
2025-11-25 23:44:09 (1823784): Guest Log: Successfully finished the ATLAS job!
2025-11-25 23:44:09 (1823784): Guest Log: Copying the results back to the shared directory!
2025-11-25 23:44:09 (1823784): Guest Log:  *** Contents of shared directory: ***
2025-11-25 23:44:09 (1823784): Guest Log: total 407936
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 root root 412569906 Nov 25 14:29 ATLAS.root_0
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 root root      8946 Nov 25 14:29 init_data.xml
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 root root    590100 Nov 25 14:29 input.tar.gz
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 root root   4526080 Nov 25 22:44 result.tar.gz
2025-11-25 23:44:09 (1823784): Guest Log: -rw-r--r--. 1 root root     15847 Nov 25 14:29 start_atlas.sh
2025-11-25 23:44:09 (1823784): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 23:44:09 (1823784): VM Completion File Detected.
2025-11-25 23:44:09 (1823784): Powering off VM.
2025-11-25 23:44:09 (1823784): Successfully stopped VM.
2025-11-25 23:44:09 (1823784): Deregistering VM. (boinc_6304d50843549ad7, slot#11)
2025-11-25 23:44:10 (1823784): Removing network bandwidth throttle group from VM.
2025-11-25 23:44:10 (1823784): Removing VM from VirtualBox.
2025-11-25 23:44:15 (1823784): called boinc_finish(0)

</stderr_txt>
]]>

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