Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:34:42 (3809834): wrapper (7.7.26015): starting
08:34:42 (3809834): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 08:34:42] Arguments: --nthreads 3
[2025-11-25 08:34:42] Threads: 3
[2025-11-25 08:34:42] Checking for CVMFS
[2025-11-25 08:34:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:34:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:34:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:34:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:34:43] 2.9.2.0 3559337 61 60712 153275 2 88 35131849 36864001 0 130560 0 751320 99.999 3953 29946 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 08:34:43] CVMFS is ok
[2025-11-25 08:34:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:34:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:34:43] Further information can be found at the LHC@home message board.
[2025-11-25 08:34:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:34:43] Checking for apptainer binary...
[2025-11-25 08:34:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:34:43] Running /usr/bin/apptainer --version
[2025-11-25 08:34:43] apptainer version 1.4.1-1.1
[2025-11-25 08:34:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:34:43] thA335
[2025-11-25 08:34:43] apptainer works
[2025-11-25 08:34:43] Set ATHENA_PROC_NUMBER=3
[2025-11-25 08:34:43] Set ATHENA_CORE_NUMBER=3
[2025-11-25 08:34:43] Starting ATLAS job with PandaID=6895329711
[2025-11-25 08:34:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:39:02]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | INFO     | update_server=False
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:39:02] 2025-11-25 07:38:14,254 | INFO     | aborting loop
[2025-11-25 08:39:02] 2025-11-25 07:38:15,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:39:02] 2025-11-25 07:38:15,174 | INFO     | all job control threads have been joined
[2025-11-25 08:39:02] 2025-11-25 07:38:15,260 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:15,260 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:15,261 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:15,307 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:15,320 | INFO     | all data control threads have been joined
[2025-11-25 08:39:02] 2025-11-25 07:38:15,552 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:15,719 | INFO     | all payload control threads have been joined
[2025-11-25 08:39:02] 2025-11-25 07:38:16,020 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,116 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,129 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,179 | INFO     | [job] control thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,326 | INFO     | [data] control thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,629 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,672 | INFO     | [job] validate thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,725 | INFO     | [payload] control thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:16,749 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:17,072 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:17,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:39:02] 2025-11-25 07:38:21,392 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:39:02] 2025-11-25 07:38:44,578 | INFO     | PID=3813564 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 08:39:02] 2025-11-25 07:38:44,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:39:02] 2025-11-25 07:38:44,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:39:02] 2025-11-25 07:38:44,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:39:02] 2025-11-25 07:38:55,447 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:39:02] 2025-11-25 07:38:57,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638416852800)>', '<ExcThread(monitor, started 139637146240768)>']
[2025-11-25 08:39:02] 2025-11-25 07:38:57,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:39:02] 2025-11-25 07:38:57,640 | INFO     | [monitor] control thread has ended
[2025-11-25 08:39:02] 2025-11-25 07:39:02,270 | INFO     | all workflow threads have been joined
[2025-11-25 08:39:02] 2025-11-25 07:39:02,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:39:02] 2025-11-25 07:39:02,271 | INFO     | traces error code: 0
[2025-11-25 08:39:02] 2025-11-25 07:39:02,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:39:02] 2025-11-25 07:39:02,317 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:39:02] 2025-11-25 07:39:02,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:39:02] 2025-11-25 07:39:02,323 [wrapper] pilotpid: 3813564
[2025-11-25 08:39:02] 2025-11-25 07:39:02,326 [wrapper] Pilot exit status: 0
[2025-11-25 08:39:02] 2025-11-25 07:39:02,334 [wrapper] pandaids: 6895329711
[2025-11-25 08:39:02] 2025-11-25 07:39:02,351 [wrapper] cleanup supervisor_pilot 3813570 3813565
[2025-11-25 08:39:02] 2025-11-25 07:39:02,354 [wrapper] Test setup, not cleaning
[2025-11-25 08:39:02] 2025-11-25 07:39:02,357 [wrapper] apfmon messages muted
[2025-11-25 08:39:02] 2025-11-25 07:39:02,359 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:39:02] 2025-11-25 07:39:02,362 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:39:02]  *** Error codes and diagnostics ***
[2025-11-25 08:39:02]     "exeErrorCode": 65,
[2025-11-25 08:39:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 08:39:02]     "pilotErrorCode": 1305,
[2025-11-25 08:39:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 08:39:02]  *** Listing of results directory ***
[2025-11-25 08:39:02] total 402264
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc    576529 Nov 21 20:29 pilot3.tar.gz
[2025-11-25 08:39:02] -rwx------ 1 boinc boinc     36292 Nov 21 20:42 runpilot2-wrapper.sh
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      5112 Nov 21 20:42 queuedata.json
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc       100 Nov 25 08:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:39:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 08:34 run_atlas
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc       105 Nov 25 08:34 job.xml
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc 407721177 Nov 25 08:34 EVNT.47483658._000122.pool.root.1
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc    590093 Nov 25 08:34 input.tar.gz
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:34 start_atlas.sh
[2025-11-25 08:39:02] drwxrwx--x 2 boinc boinc      4096 Nov 25 08:34 shared
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:34 boinc_setup_complete
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      6196 Nov 25 08:34 init_data.xml
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:34 boinc_lockfile
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      2785 Nov 25 08:34 pandaJob.out
[2025-11-25 08:39:02] -rw------- 1 boinc boinc    991830 Nov 25 08:34 agis_schedconf.cvmfs.json
[2025-11-25 08:39:02] -rw------- 1 boinc boinc   1516227 Nov 25 08:34 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:39:02] drwx------ 5 boinc boinc      4096 Nov 25 08:34 pilot3
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc       523 Nov 25 08:35 boinc_task_state.xml
[2025-11-25 08:39:02] -rw------- 1 boinc boinc       960 Nov 25 08:36 memory_monitor_summary.json
[2025-11-25 08:39:02] -rw------- 1 boinc boinc     56628 Nov 25 08:36 log.47556137._001218.job.log.tgz.1
[2025-11-25 08:39:02] -rw------- 1 boinc boinc        95 Nov 25 08:37 pilot_heartbeat.json
[2025-11-25 08:39:02] -rw------- 1 boinc boinc      8402 Nov 25 08:38 heartbeat.json
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      8192 Nov 25 08:38 boinc_mmap_file
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc        23 Nov 25 08:38 wrapper_checkpoint.txt
[2025-11-25 08:39:02] -rw------- 1 boinc boinc      4752 Nov 25 08:39 pilotlog.txt
[2025-11-25 08:39:02] -rw------- 1 boinc boinc     93746 Nov 25 08:39 log.47556137._001218.job.log.1
[2025-11-25 08:39:02] -rw------- 1 boinc boinc       186 Nov 25 08:39 output.list
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc       620 Nov 25 08:39 runtime_log
[2025-11-25 08:39:02] -rw------- 1 boinc boinc    174080 Nov 25 08:39 result.tar.gz
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      8744 Nov 25 08:39 runtime_log.err
[2025-11-25 08:39:02] -rw------- 1 boinc boinc       649 Nov 25 08:39 e4fKDmyCmg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmngJKDmNllyUo.diag
[2025-11-25 08:39:02] -rw-r--r-- 1 boinc boinc      7890 Nov 25 08:39 stderr.txt
[2025-11-25 08:39:02] No HITS result produced
[2025-11-25 08:39:02]  *** Contents of shared directory: ***
[2025-11-25 08:39:02] total 398936
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc 407721177 Nov 25 08:34 ATLAS.root_0
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc    590093 Nov 25 08:34 input.tar.gz
[2025-11-25 08:39:02] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:34 start_atlas.sh
[2025-11-25 08:39:02] -rw------- 1 boinc boinc    174080 Nov 25 08:39 result.tar.gz
08:39:03 (3809834): run_atlas exited; CPU time 32.060495
08:39:03 (3809834): called boinc_finish(0)

</stderr_txt>
]]>

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