Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:56:35 (3818539): wrapper (7.7.26015): starting
10:56:35 (3818539): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:56:35] Arguments: --nthreads 8
[2025-11-25 10:56:35] Threads: 8
[2025-11-25 10:56:35] Checking for CVMFS
[2025-11-25 10:56:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:56:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:56:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:56:38] 2.13.3.0 9239 28771 355876 153287 2 567 32058898 32935936 23202 16776704 0 106132579 99.512 127786035 38052 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 10:56:38] CVMFS is ok
[2025-11-25 10:56:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:56:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:56:38] Further information can be found at the LHC@home message board.
[2025-11-25 10:56:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:56:38] Checking for apptainer binary...
[2025-11-25 10:56:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:56:38] Running /usr/bin/apptainer --version
[2025-11-25 10:56:38] apptainer version 1.4.4-1.el9
[2025-11-25 10:56:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:56:39] c6-6-39-3.aglt2.org
[2025-11-25 10:56:39] apptainer works
[2025-11-25 10:56:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:56:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:56:39] Starting ATLAS job with PandaID=6896045316
[2025-11-25 10:56:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:08 (3818539): BOINC client no longer exists - exiting
23:00:08 (3818539): timer handler: client dead, exiting
23:11:15 (2532238): wrapper (7.7.26015): starting
23:11:15 (2532238): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 23:11:15] Arguments: --nthreads 9
[2025-11-25 23:11:15] Threads: 9
[2025-11-25 23:11:15] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:11:15] Checking for CVMFS
[2025-11-25 23:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:11:16] 2.13.3.0 9239 29506 345524 153307 1 395 24873954 32935937 16804 16776704 0 109305721 99.516 130227115 37951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:11:16] CVMFS is ok
[2025-11-25 23:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:11:16] Further information can be found at the LHC@home message board.
[2025-11-25 23:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:11:16] Checking for apptainer binary...
[2025-11-25 23:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:11:16] Running /usr/bin/apptainer --version
[2025-11-25 23:11:16] apptainer version 1.4.4-1.el9
[2025-11-25 23:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:11:16] c6-6-39-3.aglt2.org
[2025-11-25 23:11:16] apptainer works
[2025-11-25 23:11:16] Set ATHENA_PROC_NUMBER=9
[2025-11-25 23:11:16] Set ATHENA_CORE_NUMBER=9
[2025-11-25 23:11:16] Starting ATLAS job with PandaID=6896045316
[2025-11-25 23:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:39:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:39:38] 2025-11-26 23:38:56,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:39:38] 2025-11-26 23:38:57,507 | INFO     | time since job start (70052s) is within the limit (172800.0s)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,169 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:39:38] 2025-11-26 23:38:58,183 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2880.5359999999996
[2025-11-26 18:39:38] 2025-11-26 23:38:58,195 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896045316/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,196 | INFO     | extracted standard info from prmon json
[2025-11-26 18:39:38] 2025-11-26 23:38:58,196 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:39:38] 2025-11-26 23:38:58,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:39:38] 2025-11-26 23:38:58,214 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:39:38] 2025-11-26 23:38:58,216 | INFO     | sum of square deviations: 469166290564.35876
[2025-11-26 18:39:38] 2025-11-26 23:38:58,251 | INFO     | sum of deviations: 2544305012726.251
[2025-11-26 18:39:38] 2025-11-26 23:38:58,252 | INFO     | mean x: 1764165297.1167247
[2025-11-26 18:39:38] 2025-11-26 23:38:58,252 | INFO     | mean y: 3079354.2891986063
[2025-11-26 18:39:38] 2025-11-26 23:38:58,252 | INFO     | intersect: -9564050038.857283
[2025-11-26 18:39:38] 2025-11-26 23:38:58,253 | INFO     | chi2: 8.348729759685556
[2025-11-26 18:39:38] 2025-11-26 23:38:58,254 | INFO     | sum of square deviations: 463063966734.9732
[2025-11-26 18:39:38] 2025-11-26 23:38:58,280 | INFO     | sum of deviations: 2945500826579.019
[2025-11-26 18:39:38] 2025-11-26 23:38:58,280 | INFO     | mean x: 1764165144.6281714
[2025-11-26 18:39:38] 2025-11-26 23:38:58,281 | INFO     | mean y: 3089380.098862642
[2025-11-26 18:39:38] 2025-11-26 23:38:58,281 | INFO     | intersect: -11218578175.602394
[2025-11-26 18:39:38] 2025-11-26 23:38:58,282 | INFO     | chi2: 5.331443003253177
[2025-11-26 18:39:38] 2025-11-26 23:38:58,282 | INFO     | current chi2=5.331443003253177 (change=36.14066862006108 %)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,284 | INFO     | sum of square deviations: 457014806692.7856
[2025-11-26 18:39:38] 2025-11-26 23:38:58,306 | INFO     | sum of deviations: 3299667828488.042
[2025-11-26 18:39:38] 2025-11-26 23:38:58,307 | INFO     | mean x: 1764164992.1397188
[2025-11-26 18:39:38] 2025-11-26 23:38:58,307 | INFO     | mean y: 3098301.811072056
[2025-11-26 18:39:38] 2025-11-26 23:38:58,307 | INFO     | intersect: -12734253712.74059
[2025-11-26 18:39:38] 2025-11-26 23:38:58,308 | INFO     | chi2: 2.7100053994453077
[2025-11-26 18:39:38] 2025-11-26 23:38:58,309 | INFO     | current chi2=2.7100053994453077 (change=49.169382514420626 %)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,310 | INFO     | sum of square deviations: 451018577875.2907
[2025-11-26 18:39:38] 2025-11-26 23:38:58,333 | INFO     | sum of deviations: 3450131734065.7793
[2025-11-26 18:39:38] 2025-11-26 23:38:58,334 | INFO     | mean x: 1764164839.6513681
[2025-11-26 18:39:38] 2025-11-26 23:38:58,334 | INFO     | mean y: 3102126.141218005
[2025-11-26 18:39:38] 2025-11-26 23:38:58,334 | INFO     | intersect: -13492131542.675043
[2025-11-26 18:39:38] 2025-11-26 23:38:58,335 | INFO     | chi2: 2.1331351455297103
[2025-11-26 18:39:38] 2025-11-26 23:38:58,336 | INFO     | current chi2=2.1331351455297103 (change=21.286682824826585 %)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,336 | INFO     | right removable region: 1132
[2025-11-26 18:39:38] 2025-11-26 23:38:58,337 | INFO     | sum of square deviations: 463062204205.22815
[2025-11-26 18:39:38] 2025-11-26 23:38:58,360 | INFO     | sum of deviations: 2246242319392.834
[2025-11-26 18:39:38] 2025-11-26 23:38:58,361 | INFO     | mean x: 1764165449.6272967
[2025-11-26 18:39:38] 2025-11-26 23:38:58,361 | INFO     | mean y: 3086791.7296587927
[2025-11-26 18:39:38] 2025-11-26 23:38:58,361 | INFO     | intersect: -8554603849.779148
[2025-11-26 18:39:38] 2025-11-26 23:38:58,362 | INFO     | chi2: 6.509828777570842
[2025-11-26 18:39:38] 2025-11-26 23:38:58,362 | INFO     | current chi2=6.509828777570842 (change=22.026116966851898 %)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,362 | INFO     | left removable region: 10
[2025-11-26 18:39:38] 2025-11-26 23:38:58,364 | INFO     | sum of square deviations: 438008725447.1448
[2025-11-26 18:39:38] 2025-11-26 23:38:58,386 | INFO     | sum of deviations: 3052211594133.2456
[2025-11-26 18:39:38] 2025-11-26 23:38:58,386 | INFO     | mean x: 1764165114.171123
[2025-11-26 18:39:38] 2025-11-26 23:38:58,387 | INFO     | mean y: 3112657.050802139
[2025-11-26 18:39:38] 2025-11-26 23:38:58,387 | INFO     | intersect: -12290261658.590021
[2025-11-26 18:39:38] 2025-11-26 23:38:58,388 | INFO     | chi2: 0.1643119672651794
[2025-11-26 18:39:38] 2025-11-26 23:38:58,388 | INFO     | current memory leak: 6.97 B/s (using 1122 data points, chi2=0.16)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | could have reported an average CPU frequency of 2944 MHz (42 samples)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | ..............................
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . Timing measurements:
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . get job = 0 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . initial setup = 2 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . payload setup = 5 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . stage-in = 0 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . payload execution = 70011 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . stage-out = 5 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,390 | INFO     | . log creation = 0 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,391 | INFO     | ..............................
[2025-11-26 18:39:38] 2025-11-26 23:38:58,903 | INFO     | 
[2025-11-26 18:39:38] 2025-11-26 23:38:58,903 | INFO     | job summary report
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | --------------------------------------------------
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | PanDA job id: 6896045316
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | task id: 47556185
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | errors: (none)
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | pilot state: finished 
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | transexitcode: 0
[2025-11-26 18:39:38] 2025-11-26 23:38:58,904 | INFO     | exeerrorcode: 0
[2025-11-26 18:39:38] 2025-11-26 23:38:58,919 | INFO     | exeerrordiag: 
[2025-11-26 18:39:38] 2025-11-26 23:38:58,919 | INFO     | exitcode: 0
[2025-11-26 18:39:38] 2025-11-26 23:38:58,919 | INFO     | exitmsg: OK
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | cpuconsumptiontime: 257733 s
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | nevents: 1000
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | neventsw: 0
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | pid: 2573524
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | pgrp: 2573524
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | corecount: 9
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | event service: False
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | sizes: {0: 2284311, 4: 2284573, 11: 2284601, 70021: 2341417, 70027: 2350495, 70038: 2350685}
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | --------------------------------------------------
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | 
[2025-11-26 18:39:38] 2025-11-26 23:38:58,920 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 18:39:38] 2025-11-26 23:38:59,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:39:38] 2025-11-26 23:38:59,015 | INFO     | job 6896045316 has completed (purged errors)
[2025-11-26 18:39:38] 2025-11-26 23:38:59,015 | INFO     | overall cleanup function is called
[2025-11-26 18:39:38] 2025-11-26 23:39:00,081 | INFO     | --- collectZombieJob: --- 10, [2573524]
[2025-11-26 18:39:38] 2025-11-26 23:39:00,081 | INFO     | zombie collector waiting for pid 2573524
[2025-11-26 18:39:38] 2025-11-26 23:39:00,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:39:38] 2025-11-26 23:39:00,082 | INFO     | collected zombie processes
[2025-11-26 18:39:38] 2025-11-26 23:39:00,082 | INFO     | will attempt to kill all subprocesses of pid=2573524
[2025-11-26 18:39:38] 2025-11-26 23:39:01,097 | INFO     | process IDs to be killed: [2573524] (in reverse order)
[2025-11-26 18:39:38] 2025-11-26 23:39:01,240 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:39:38] 2025-11-26 23:39:01,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:39:38] 2025-11-26 23:39:01,260 | INFO     | did not find any defunct processes belonging to 2573524
[2025-11-26 18:39:38] 2025-11-26 23:39:01,275 | INFO     | did not find any defunct processes belonging to 2573524
[2025-11-26 18:39:38] 2025-11-26 23:39:01,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:39:38] 2025-11-26 23:39:01,276 | INFO     | ready for new job
[2025-11-26 18:39:38] 2025-11-26 23:39:01,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:39:38] 2025-11-26 23:39:01,281 | INFO     | ***************************************
[2025-11-26 18:39:38] 2025-11-26 23:39:01,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:39:38] 2025-11-26 23:39:01,281 | INFO     | ***************************************
[2025-11-26 18:39:38] 2025-11-26 23:39:01,282 | INFO     | 
[2025-11-26 18:39:38] 2025-11-26 23:39:01,284 | INFO     | architecture information:
[2025-11-26 18:39:38] 2025-11-26 23:39:01,285 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:39:38] 2025-11-26 23:39:01,337 | INFO     | cat /etc/os-release:
[2025-11-26 18:39:38] NAME="CentOS Linux"
[2025-11-26 18:39:38] VERSION="7 (Core)"
[2025-11-26 18:39:38] ID="centos"
[2025-11-26 18:39:38] ID_LIKE="rhel fedora"
[2025-11-26 18:39:38] VERSION_ID="7"
[2025-11-26 18:39:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:39:38] ANSI_COLOR="0;31"
[2025-11-26 18:39:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:39:38] HOME_URL="https://www.centos.org/"
[2025-11-26 18:39:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:39:38] 
[2025-11-26 18:39:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:39:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:39:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:39:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:39:38] 
[2025-11-26 18:39:38] 2025-11-26 23:39:01,354 | INFO     | ***************************************
[2025-11-26 18:39:38] 2025-11-26 23:39:01,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 18:39:38] 2025-11-26 23:39:01,947 | INFO     | sufficient remaining disk space (71108132864 B)
[2025-11-26 18:39:38] 2025-11-26 23:39:01,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:39:38] 2025-11-26 23:39:01,947 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:39:38] 2025-11-26 23:39:01,947 | INFO     | update_server=False
[2025-11-26 18:39:38] 2025-11-26 23:39:01,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:39:38] 2025-11-26 23:39:01,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:39:38] 2025-11-26 23:39:02,285 | INFO     | all payload control threads have been joined
[2025-11-26 18:39:38] 2025-11-26 23:39:02,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:39:38] 2025-11-26 23:39:02,331 | INFO     | all data control threads have been joined
[2025-11-26 18:39:38] 2025-11-26 23:39:02,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:39:38] 2025-11-26 23:39:02,533 | INFO     | aborting loop
[2025-11-26 18:39:38] 2025-11-26 23:39:02,953 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,009 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,134 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,285 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,291 | INFO     | [payload] control thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,331 | INFO     | all job control threads have been joined
[2025-11-26 18:39:38] 2025-11-26 23:39:03,337 | INFO     | [data] control thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,538 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,549 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:39:38] 2025-11-26 23:39:03,608 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,763 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:03,918 | INFO     | [job] validate thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:04,007 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:04,316 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:04,337 | INFO     | [job] control thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:04,555 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:05,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:12,534 | INFO     | job.realtimelogging is not enabled
[2025-11-26 18:39:38] 2025-11-26 23:39:13,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:39:38] 2025-11-26 23:39:30,916 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:39:38] 2025-11-26 23:39:32,291 | INFO     | PID=2547336 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:39:38] 2025-11-26 23:39:32,292 | INFO     | .. there are 30 such processes running
[2025-11-26 18:39:38] 2025-11-26 23:39:32,294 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:39:38] 2025-11-26 23:39:32,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:39:38] 2025-11-26 23:39:32,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:39:38] 2025-11-26 23:39:32,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968342140736)>', '<ExcThread(monitor, started 139967539963648)>']
[2025-11-26 18:39:38] 2025-11-26 23:39:33,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:39:38] 2025-11-26 23:39:33,300 | INFO     | [monitor] control thread has ended
[2025-11-26 18:39:38] 2025-11-26 23:39:37,641 | INFO     | all workflow threads have been joined
[2025-11-26 18:39:38] 2025-11-26 23:39:37,642 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:39:38] 2025-11-26 23:39:37,642 | INFO     | traces error code: 0
[2025-11-26 18:39:38] 2025-11-26 23:39:37,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:39:38] 2025-11-26 23:39:37,892 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:39:38] 2025-11-26 23:39:37,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:39:38] 2025-11-26 23:39:37,897 [wrapper] pilotpid: 2547336
[2025-11-26 18:39:38] 2025-11-26 23:39:37,905 [wrapper] Pilot exit status: 0
[2025-11-26 18:39:38] 2025-11-26 23:39:38,014 [wrapper] pandaids: 6896045316 6896045316
[2025-11-26 18:39:38] 2025-11-26 23:39:38,323 [wrapper] cleanup supervisor_pilot 2561604 2547337
[2025-11-26 18:39:38] 2025-11-26 23:39:38,332 [wrapper] Test setup, not cleaning
[2025-11-26 18:39:38] 2025-11-26 23:39:38,349 [wrapper] apfmon messages muted
[2025-11-26 18:39:38] 2025-11-26 23:39:38,373 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:39:38] 2025-11-26 23:39:38,401 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:39:38]  *** Error codes and diagnostics ***
[2025-11-26 18:39:38]     "exeErrorCode": 0,
[2025-11-26 18:39:38]     "exeErrorDiag": "",
[2025-11-26 18:39:38]     "pilotErrorCode": 0,
[2025-11-26 18:39:38]     "pilotErrorDiag": "",
[2025-11-26 18:39:38]  *** Listing of results directory ***
[2025-11-26 18:39:38] total 1747252
[2025-11-26 18:39:38] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:56 queuedata.json
[2025-11-26 18:39:38] -rwx------. 1 boincer umatlas     36292 Nov 24 13:58 runpilot2-wrapper.sh
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:39:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:56 run_atlas
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:56 job.xml
[2025-11-26 18:39:38] -rw-r--r--. 3 boincer umatlas 413000327 Nov 25 10:56 EVNT.47483658._004240.pool.root.1
[2025-11-26 18:39:38] -rw-r--r--. 3 boincer umatlas 413000327 Nov 25 10:56 ATLAS.root_0
[2025-11-26 18:39:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:56 start_atlas.sh
[2025-11-26 18:39:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:56 shared
[2025-11-26 18:39:38] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 10:56 input.tar.gz
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:56 boinc_lockfile
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 23:11 pandaJob.out
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas        57 Nov 25 23:11 setup.sh.local
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas    991877 Nov 25 23:11 agis_schedconf.cvmfs.json
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:20 boinc_task_state.xml
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 18:36 init_data.xml
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas 936642373 Nov 26 18:37 HITS.47556185._000040.pool.root.1
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas      1069 Nov 26 18:38 memory_monitor_summary.json
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas   2372388 Nov 26 18:38 log.47556185._000040.job.log.tgz.1
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas      8634 Nov 26 18:38 heartbeat.json
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas        96 Nov 26 18:39 pilot_heartbeat.json
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:39 wrapper_checkpoint.txt
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas      4896 Nov 26 18:39 pilotlog.txt
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:39 boinc_mmap_file
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas   8930983 Nov 26 18:39 log.47556185._000040.job.log.1
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas       353 Nov 26 18:39 output.list
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:39 runtime_log
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas  11325440 Nov 26 18:39 result.tar.gz
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 18:39 runtime_log.err
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas       790 Nov 26 18:39 jydNDmmwqh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIAJKDmTOBcvn.diag
[2025-11-26 18:39:38] -rw-r--r--. 1 boincer umatlas     23575 Nov 26 18:39 stderr.txt
[2025-11-26 18:39:38] HITS file was successfully produced:
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas 936642373 Nov 26 18:37 shared/HITS.pool.root.1
[2025-11-26 18:39:38]  *** Contents of shared directory: ***
[2025-11-26 18:39:38] total 1329680
[2025-11-26 18:39:38] -rw-r--r--. 3 boincer umatlas 413000327 Nov 25 10:56 ATLAS.root_0
[2025-11-26 18:39:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:56 start_atlas.sh
[2025-11-26 18:39:38] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 10:56 input.tar.gz
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas 936642373 Nov 26 18:37 HITS.pool.root.1
[2025-11-26 18:39:38] -rw-------. 1 boincer umatlas  11325440 Nov 26 18:39 result.tar.gz
18:40:00 (2532238): run_atlas exited; CPU time 259536.996804
18:40:00 (2532238): called boinc_finish(0)

</stderr_txt>
]]>

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