Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:30:40 (26813): wrapper (7.7.26015): starting
00:30:40 (26813): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:30:40] Arguments: --nthreads 8
[2025-11-25 00:30:40] Threads: 8
[2025-11-25 00:30:40] Checking for CVMFS
[2025-11-25 00:30:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:30:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:30:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:30:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:30:41] 2.11.2.0 8318 115892 137532 153272 2 82 12484427 18432000 1885 130560 0 82502815 99.972 5052806 31733 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:30:41] CVMFS is ok
[2025-11-25 00:30:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:30:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:30:41] Further information can be found at the LHC@home message board.
[2025-11-25 00:30:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:30:41] Checking for apptainer binary...
[2025-11-25 00:30:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:30:41] Running /usr/bin/apptainer --version
[2025-11-25 00:30:41] apptainer version 1.3.2-1.el7
[2025-11-25 00:30:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:30:42] c-206-28.aglt2.org
[2025-11-25 00:30:42] apptainer works
[2025-11-25 00:30:42] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:30:42] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:30:42] Starting ATLAS job with PandaID=6895401954
[2025-11-25 00:30:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:11:09 (22699): wrapper (7.7.26015): starting
12:11:09 (22699): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:11:09] Arguments: --nthreads 8
[2025-11-25 12:11:09] Threads: 8
[2025-11-25 12:11:09] This job has been restarted, cleaning up previous attempt
[2025-11-25 12:11:09] Checking for CVMFS
[2025-11-25 12:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:11:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:11:10] 2.11.2.0 8318 116592 132124 153290 2 1 12577118 18432000 1 130560 0 83105149 99.973 5077858 31749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:11:10] CVMFS is ok
[2025-11-25 12:11:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:11:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:11:10] Further information can be found at the LHC@home message board.
[2025-11-25 12:11:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:11:10] Checking for apptainer binary...
[2025-11-25 12:11:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:11:10] Running /usr/bin/apptainer --version
[2025-11-25 12:11:10] apptainer version 1.3.2-1.el7
[2025-11-25 12:11:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:11:11] c-206-28.aglt2.org
[2025-11-25 12:11:11] apptainer works
[2025-11-25 12:11:11] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:11:11] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:11:11] Starting ATLAS job with PandaID=6895401954
[2025-11-25 12:11:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:46:26]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:46:26] 2025-11-26 12:45:27,460 | INFO     | monitor loop #5018: job 0:6895401954 is in state 'finished'
[2025-11-26 07:46:26] 2025-11-26 12:45:27,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:46:26] 2025-11-26 12:45:27,544 | INFO     | time since job start (70444s) is within the limit (172800.0s)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,559 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 07:46:26] 2025-11-26 12:45:28,564 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2084.0833333333335
[2025-11-26 07:46:26] 2025-11-26 12:45:28,567 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895401954/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,567 | INFO     | extracted standard info from prmon json
[2025-11-26 07:46:26] 2025-11-26 12:45:28,567 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:46:26] 2025-11-26 12:45:28,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:46:26] 2025-11-26 12:45:28,582 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:46:26] 2025-11-26 12:45:28,584 | INFO     | sum of square deviations: 477775302795.1815
[2025-11-26 07:46:26] 2025-11-26 12:45:28,608 | INFO     | sum of deviations: 2454167139811.9595
[2025-11-26 07:46:26] 2025-11-26 12:45:28,608 | INFO     | mean x: 1764125907.8190477
[2025-11-26 07:46:26] 2025-11-26 12:45:28,608 | INFO     | mean y: 2863731.4926406927
[2025-11-26 07:46:26] 2025-11-26 12:45:28,608 | INFO     | intersect: -9058843326.472332
[2025-11-26 07:46:26] 2025-11-26 12:45:28,609 | INFO     | chi2: 5.572497594039643
[2025-11-26 07:46:26] 2025-11-26 12:45:28,610 | INFO     | sum of square deviations: 471597531299.3122
[2025-11-26 07:46:26] 2025-11-26 12:45:28,638 | INFO     | sum of deviations: 2824562141657.7686
[2025-11-26 07:46:26] 2025-11-26 12:45:28,639 | INFO     | mean x: 1764125755.3226087
[2025-11-26 07:46:26] 2025-11-26 12:45:28,639 | INFO     | mean y: 2872870.1704347827
[2025-11-26 07:46:26] 2025-11-26 12:45:28,639 | INFO     | intersect: -10563091730.78744
[2025-11-26 07:46:26] 2025-11-26 12:45:28,640 | INFO     | chi2: 2.505137415042773
[2025-11-26 07:46:26] 2025-11-26 12:45:28,640 | INFO     | current chi2=2.505137415042773 (change=55.04462096632802 %)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,641 | INFO     | sum of square deviations: 465473249178.4142
[2025-11-26 07:46:26] 2025-11-26 12:45:28,665 | INFO     | sum of deviations: 2844811594974.4126
[2025-11-26 07:46:26] 2025-11-26 12:45:28,665 | INFO     | mean x: 1764125602.826201
[2025-11-26 07:46:26] 2025-11-26 12:45:28,665 | INFO     | mean y: 2873372.4794759825
[2025-11-26 07:46:26] 2025-11-26 12:45:28,665 | INFO     | intersect: -10778852492.045101
[2025-11-26 07:46:26] 2025-11-26 12:45:28,666 | INFO     | chi2: 2.4323679373357887
[2025-11-26 07:46:26] 2025-11-26 12:45:28,666 | INFO     | current chi2=2.4323679373357887 (change=2.904809822807337 %)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,666 | INFO     | right removable region: 1144
[2025-11-26 07:46:26] 2025-11-26 12:45:28,668 | INFO     | sum of square deviations: 471597024450.9632
[2025-11-26 07:46:26] 2025-11-26 12:45:28,700 | INFO     | sum of deviations: 2167595518254.0808
[2025-11-26 07:46:26] 2025-11-26 12:45:28,700 | INFO     | mean x: 1764126060.3217392
[2025-11-26 07:46:26] 2025-11-26 12:45:28,701 | INFO     | mean y: 2870795.980869565
[2025-11-26 07:46:26] 2025-11-26 12:45:28,701 | INFO     | intersect: -8105559799.908613
[2025-11-26 07:46:26] 2025-11-26 12:45:28,702 | INFO     | chi2: 3.592038342561502
[2025-11-26 07:46:26] 2025-11-26 12:45:28,703 | INFO     | current chi2=3.592038342561502 (change=35.53988526789935 %)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,704 | INFO     | sum of square deviations: 465472375905.0096
[2025-11-26 07:46:26] 2025-11-26 12:45:28,729 | INFO     | sum of deviations: 2067880112019.2693
[2025-11-26 07:46:26] 2025-11-26 12:45:28,729 | INFO     | mean x: 1764126212.8227074
[2025-11-26 07:46:26] 2025-11-26 12:45:28,729 | INFO     | mean y: 2873278.474235808
[2025-11-26 07:46:26] 2025-11-26 12:45:28,729 | INFO     | intersect: -7834329742.425137
[2025-11-26 07:46:26] 2025-11-26 12:45:28,730 | INFO     | chi2: 3.484923678162953
[2025-11-26 07:46:26] 2025-11-26 12:45:28,730 | INFO     | current chi2=3.484923678162953 (change=2.982002255637526 %)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,730 | INFO     | left removable region: 20
[2025-11-26 07:46:26] 2025-11-26 12:45:28,731 | INFO     | sum of square deviations: 440328506941.5559
[2025-11-26 07:46:26] 2025-11-26 12:45:28,754 | INFO     | sum of deviations: 2304881285300.9756
[2025-11-26 07:46:26] 2025-11-26 12:45:28,754 | INFO     | mean x: 1764126182.3327403
[2025-11-26 07:46:26] 2025-11-26 12:45:28,754 | INFO     | mean y: 2886817.465302491
[2025-11-26 07:46:26] 2025-11-26 12:45:28,755 | INFO     | intersect: -9231358430.04459
[2025-11-26 07:46:26] 2025-11-26 12:45:28,755 | INFO     | chi2: 0.24542824278403302
[2025-11-26 07:46:26] 2025-11-26 12:45:28,756 | INFO     | current memory leak: 5.23 B/s (using 1124 data points, chi2=0.25)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,756 | INFO     | could have reported an average CPU frequency of 2567 MHz (42 samples)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | ..............................
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . Timing measurements:
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . get job = 0 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . initial setup = 2 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . payload setup = 6 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . stage-in = 0 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . payload execution = 70408 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . stage-out = 3 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | . log creation = 0 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,757 | INFO     | ..............................
[2025-11-26 07:46:26] 2025-11-26 12:45:28,832 | INFO     | 
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | job summary report
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | --------------------------------------------------
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | PanDA job id: 6895401954
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | task id: 47556161
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | errors: (none)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | pilot state: finished 
[2025-11-26 07:46:26] 2025-11-26 12:45:28,833 | INFO     | transexitcode: 0
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | exeerrorcode: 0
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | exeerrordiag: 
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | exitcode: 0
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | exitmsg: OK
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | cpuconsumptiontime: 544064 s
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | nevents: 1000
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | neventsw: 0
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | pid: 21510
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | pgrp: 21510
[2025-11-26 07:46:26] 2025-11-26 12:45:28,834 | INFO     | corecount: 8
[2025-11-26 07:46:26] 2025-11-26 12:45:28,835 | INFO     | event service: False
[2025-11-26 07:46:26] 2025-11-26 12:45:28,835 | INFO     | sizes: {0: 2284141, 1: 2284340, 5: 2284602, 11: 2284658, 70418: 2341203, 70422: 2350197, 70426: 2350381, 70429: 2350627}
[2025-11-26 07:46:26] 2025-11-26 12:45:28,835 | INFO     | --------------------------------------------------
[2025-11-26 07:46:26] 2025-11-26 12:45:28,835 | INFO     | 
[2025-11-26 07:46:26] 2025-11-26 12:45:28,835 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 07:46:26] 2025-11-26 12:45:28,852 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,852 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,852 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | job 6895401954 has completed (purged errors)
[2025-11-26 07:46:26] 2025-11-26 12:45:28,854 | INFO     | overall cleanup function is called
[2025-11-26 07:46:26] 2025-11-26 12:45:29,866 | INFO     | --- collectZombieJob: --- 10, [21510]
[2025-11-26 07:46:26] 2025-11-26 12:45:29,867 | INFO     | zombie collector waiting for pid 21510
[2025-11-26 07:46:26] 2025-11-26 12:45:29,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:46:26] 2025-11-26 12:45:29,867 | INFO     | collected zombie processes
[2025-11-26 07:46:26] 2025-11-26 12:45:29,867 | INFO     | will attempt to kill all subprocesses of pid=21510
[2025-11-26 07:46:26] 2025-11-26 12:45:30,017 | INFO     | process IDs to be killed: [21510] (in reverse order)
[2025-11-26 07:46:26] 2025-11-26 12:45:30,060 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:46:26] 2025-11-26 12:45:30,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:46:26] 2025-11-26 12:45:30,063 | INFO     | did not find any defunct processes belonging to 21510
[2025-11-26 07:46:26] 2025-11-26 12:45:30,065 | INFO     | did not find any defunct processes belonging to 21510
[2025-11-26 07:46:26] 2025-11-26 12:45:30,067 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:46:26] 2025-11-26 12:45:30,067 | INFO     | ready for new job
[2025-11-26 07:46:26] 2025-11-26 12:45:30,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:46:26] 2025-11-26 12:45:30,071 | INFO     | ***************************************
[2025-11-26 07:46:26] 2025-11-26 12:45:30,071 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:46:26] 2025-11-26 12:45:30,071 | INFO     | ***************************************
[2025-11-26 07:46:26] 2025-11-26 12:45:30,071 | INFO     | 
[2025-11-26 07:46:26] 2025-11-26 12:45:30,072 | INFO     | architecture information:
[2025-11-26 07:46:26] 2025-11-26 12:45:30,073 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:46:26] 2025-11-26 12:45:30,085 | INFO     | cat /etc/os-release:
[2025-11-26 07:46:26] NAME="CentOS Linux"
[2025-11-26 07:46:26] VERSION="7 (Core)"
[2025-11-26 07:46:26] ID="centos"
[2025-11-26 07:46:26] ID_LIKE="rhel fedora"
[2025-11-26 07:46:26] VERSION_ID="7"
[2025-11-26 07:46:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:46:26] ANSI_COLOR="0;31"
[2025-11-26 07:46:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:46:26] HOME_URL="https://www.centos.org/"
[2025-11-26 07:46:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:46:26] 
[2025-11-26 07:46:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:46:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:46:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:46:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:46:26] 
[2025-11-26 07:46:26] 2025-11-26 12:45:30,086 | INFO     | ***************************************
[2025-11-26 07:46:26] 2025-11-26 12:45:30,589 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 07:46:26] 2025-11-26 12:45:30,605 | INFO     | sufficient remaining disk space (25070403584 B)
[2025-11-26 07:46:26] 2025-11-26 12:45:30,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:46:26] 2025-11-26 12:45:30,605 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:46:26] 2025-11-26 12:45:30,605 | INFO     | update_server=False
[2025-11-26 07:46:26] 2025-11-26 12:45:30,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:46:26] 2025-11-26 12:45:30,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:46:26] 2025-11-26 12:45:30,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:46:26] 2025-11-26 12:45:30,692 | INFO     | all payload control threads have been joined
[2025-11-26 07:46:26] 2025-11-26 12:45:30,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:46:26] 2025-11-26 12:45:30,965 | INFO     | aborting loop
[2025-11-26 07:46:26] 2025-11-26 12:45:31,274 | INFO     | all data control threads have been joined
[2025-11-26 07:46:26] 2025-11-26 12:45:31,442 | INFO     | all job control threads have been joined
[2025-11-26 07:46:26] 2025-11-26 12:45:31,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:46:26] 2025-11-26 12:45:31,607 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:31,611 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:31,698 | INFO     | [payload] control thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:31,970 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,068 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,183 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,232 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,280 | INFO     | [data] control thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,366 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,447 | INFO     | [job] control thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,612 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,739 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,789 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:32,885 | INFO     | [job] validate thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:33,175 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:45:35,473 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:46:26] 2025-11-26 12:46:00,808 | INFO     | PID=2283 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 07:46:26] 2025-11-26 12:46:00,808 | INFO     | .. there are 3 such processes running
[2025-11-26 07:46:26] 2025-11-26 12:46:00,809 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:46:26] 2025-11-26 12:46:00,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:46:26] 2025-11-26 12:46:00,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:46:26] 2025-11-26 12:46:20,290 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:46:26] 2025-11-26 12:46:21,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212094830400)>', '<ExcThread(monitor, started 140211170285312)>']
[2025-11-26 07:46:26] 2025-11-26 12:46:21,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:46:26] 2025-11-26 12:46:21,913 | INFO     | [monitor] control thread has ended
[2025-11-26 07:46:26] 2025-11-26 12:46:26,618 | INFO     | all workflow threads have been joined
[2025-11-26 07:46:26] 2025-11-26 12:46:26,618 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:46:26] 2025-11-26 12:46:26,619 | INFO     | traces error code: 0
[2025-11-26 07:46:26] 2025-11-26 12:46:26,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:46:26] 2025-11-26 12:46:26,723 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:46:26] 2025-11-26 12:46:26,725 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:46:26] 2025-11-26 12:46:26,728 [wrapper] pilotpid: 2283
[2025-11-26 07:46:26] 2025-11-26 12:46:26,730 [wrapper] Pilot exit status: 0
[2025-11-26 07:46:26] 2025-11-26 12:46:26,738 [wrapper] pandaids: 6895401954 6895401954
[2025-11-26 07:46:26] 2025-11-26 12:46:26,768 [wrapper] cleanup supervisor_pilot 24632 2285
[2025-11-26 07:46:26] 2025-11-26 12:46:26,770 [wrapper] Test setup, not cleaning
[2025-11-26 07:46:26] 2025-11-26 12:46:26,772 [wrapper] apfmon messages muted
[2025-11-26 07:46:26] 2025-11-26 12:46:26,774 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:46:26] 2025-11-26 12:46:26,776 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:46:26]  *** Error codes and diagnostics ***
[2025-11-26 07:46:26]     "exeErrorCode": 0,
[2025-11-26 07:46:26]     "exeErrorDiag": "",
[2025-11-26 07:46:26]     "pilotErrorCode": 0,
[2025-11-26 07:46:26]     "pilotErrorDiag": "",
[2025-11-26 07:46:26]  *** Listing of results directory ***
[2025-11-26 07:46:26] total 1721168
[2025-11-26 07:46:26] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 02:58 queuedata.json
[2025-11-26 07:46:26] -rwx------ 1 boincer umatlas     36292 Nov 24 02:59 runpilot2-wrapper.sh
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:46:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:30 run_atlas
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:30 job.xml
[2025-11-26 07:46:26] -rw-r--r-- 3 boincer umatlas 409444609 Nov 25 00:30 EVNT.47483658._002027.pool.root.1
[2025-11-26 07:46:26] -rw-r--r-- 3 boincer umatlas 409444609 Nov 25 00:30 ATLAS.root_0
[2025-11-26 07:46:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:30 start_atlas.sh
[2025-11-26 07:46:26] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:30 shared
[2025-11-26 07:46:26] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 00:30 input.tar.gz
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:30 boinc_lockfile
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 12:11 pandaJob.out
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas        57 Nov 25 12:11 setup.sh.local
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas    991543 Nov 25 12:11 agis_schedconf.cvmfs.json
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas       534 Nov 26 07:36 boinc_task_state.xml
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 07:36 init_data.xml
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas 915533105 Nov 26 07:44 HITS.47556161._000110.pool.root.1
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas      1066 Nov 26 07:45 memory_monitor_summary.json
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas   1516240 Nov 26 07:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas   2322411 Nov 26 07:45 log.47556161._000110.job.log.tgz.1
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas      8649 Nov 26 07:45 heartbeat.json
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas        30 Nov 26 07:45 wrapper_checkpoint.txt
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 07:45 boinc_mmap_file
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas        96 Nov 26 07:46 pilot_heartbeat.json
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas      4820 Nov 26 07:46 pilotlog.txt
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas   9744492 Nov 26 07:46 log.47556161._000110.job.log.1
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas       353 Nov 26 07:46 output.list
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas       620 Nov 26 07:46 runtime_log
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas  12083200 Nov 26 07:46 result.tar.gz
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas       793 Nov 26 07:46 utyNDmIfgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2WLKDmykrxom.diag
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 07:46 runtime_log.err
[2025-11-26 07:46:26] -rw-r--r-- 1 boincer umatlas     23456 Nov 26 07:46 stderr.txt
[2025-11-26 07:46:26] HITS file was successfully produced:
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas 915533105 Nov 26 07:44 shared/HITS.pool.root.1
[2025-11-26 07:46:26]  *** Contents of shared directory: ***
[2025-11-26 07:46:26] total 1306328
[2025-11-26 07:46:26] -rw-r--r-- 3 boincer umatlas 409444609 Nov 25 00:30 ATLAS.root_0
[2025-11-26 07:46:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:30 start_atlas.sh
[2025-11-26 07:46:26] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 00:30 input.tar.gz
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas 915533105 Nov 26 07:44 HITS.pool.root.1
[2025-11-26 07:46:26] -rw------- 1 boincer umatlas  12083200 Nov 26 07:46 result.tar.gz
07:46:28 (22699): run_atlas exited; CPU time 542695.928232
07:46:28 (22699): called boinc_finish(0)

</stderr_txt>
]]>

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