Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:28:30 (1891320): wrapper (7.7.26015): starting
00:28:30 (1891320): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:28:30] Arguments: --nthreads 9
[2025-11-25 00:28:30] Threads: 9
[2025-11-25 00:28:30] Checking for CVMFS
[2025-11-25 00:28:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:28:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:28:32] 2.13.3.0 9239 28143 334636 153272 1 116 25261525 32935937 24619 16776704 0 103973991 99.501 126070474 38072 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:28:32] CVMFS is ok
[2025-11-25 00:28:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:28:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:28:32] Further information can be found at the LHC@home message board.
[2025-11-25 00:28:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:28:32] Checking for apptainer binary...
[2025-11-25 00:28:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:28:32] Running /usr/bin/apptainer --version
[2025-11-25 00:28:32] apptainer version 1.4.4-1.el9
[2025-11-25 00:28:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:28:33] c6-6-39-3.aglt2.org
[2025-11-25 00:28:33] apptainer works
[2025-11-25 00:28:33] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:28:33] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:28:33] Starting ATLAS job with PandaID=6896045257
[2025-11-25 00:28:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:39:59]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:39:59] 2025-11-25 23:39:09,739 | INFO     | time since job start (65354s) is within the limit (172800.0s)
[2025-11-25 18:39:59] 2025-11-25 23:39:10,137 | INFO     | monitor loop #3931: job 0:6896045257 is in state 'finished'
[2025-11-25 18:39:59] 2025-11-25 23:39:10,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,225 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 18:39:59] 2025-11-25 23:39:11,234 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2835.827946428572
[2025-11-25 18:39:59] 2025-11-25 23:39:11,244 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896045257/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,245 | INFO     | extracted standard info from prmon json
[2025-11-25 18:39:59] 2025-11-25 23:39:11,245 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:39:59] 2025-11-25 23:39:11,245 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:39:59] 2025-11-25 23:39:11,262 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:39:59] 2025-11-25 23:39:11,263 | INFO     | sum of square deviations: 379775544275.4614
[2025-11-25 18:39:59] 2025-11-25 23:39:11,284 | INFO     | sum of deviations: 3378870424158.91
[2025-11-25 18:39:59] 2025-11-25 23:39:11,285 | INFO     | mean x: 1764081330.97757
[2025-11-25 18:39:59] 2025-11-25 23:39:11,285 | INFO     | mean y: 3053100.7878504675
[2025-11-25 18:39:59] 2025-11-25 23:39:11,285 | INFO     | intersect: -15692012905.694157
[2025-11-25 18:39:59] 2025-11-25 23:39:11,286 | INFO     | chi2: 7.20145657641736
[2025-11-25 18:39:59] 2025-11-25 23:39:11,287 | INFO     | sum of square deviations: 374476962582.2393
[2025-11-25 18:39:59] 2025-11-25 23:39:11,308 | INFO     | sum of deviations: 3750986701166.3296
[2025-11-25 18:39:59] 2025-11-25 23:39:11,308 | INFO     | mean x: 1764081178.5032864
[2025-11-25 18:39:59] 2025-11-25 23:39:11,309 | INFO     | mean y: 3063804.620657277
[2025-11-25 18:39:59] 2025-11-25 23:39:11,309 | INFO     | intersect: -17667035297.64515
[2025-11-25 18:39:59] 2025-11-25 23:39:11,310 | INFO     | chi2: 4.080415315891475
[2025-11-25 18:39:59] 2025-11-25 23:39:11,310 | INFO     | current chi2=4.080415315891475 (change=43.33902770095667 %)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,311 | INFO     | sum of square deviations: 369227722443.2608
[2025-11-25 18:39:59] 2025-11-25 23:39:11,332 | INFO     | sum of deviations: 3782874352846.143
[2025-11-25 18:39:59] 2025-11-25 23:39:11,332 | INFO     | mean x: 1764081026.026415
[2025-11-25 18:39:59] 2025-11-25 23:39:11,332 | INFO     | mean y: 3064724.6735849055
[2025-11-25 18:39:59] 2025-11-25 23:39:11,332 | INFO     | intersect: -18070596769.48283
[2025-11-25 18:39:59] 2025-11-25 23:39:11,333 | INFO     | chi2: 3.8445676334115886
[2025-11-25 18:39:59] 2025-11-25 23:39:11,333 | INFO     | current chi2=3.8445676334115886 (change=5.779992089564033 %)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,334 | INFO     | right removable region: 1059
[2025-11-25 18:39:59] 2025-11-25 23:39:11,335 | INFO     | sum of square deviations: 374473387372.2388
[2025-11-25 18:39:59] 2025-11-25 23:39:11,355 | INFO     | sum of deviations: 2966954986004.4673
[2025-11-25 18:39:59] 2025-11-25 23:39:11,355 | INFO     | mean x: 1764081483.5032864
[2025-11-25 18:39:59] 2025-11-25 23:39:11,355 | INFO     | mean y: 3064944.8666666667
[2025-11-25 18:39:59] 2025-11-25 23:39:11,355 | INFO     | intersect: -13973763662.170006
[2025-11-25 18:39:59] 2025-11-25 23:39:11,356 | INFO     | chi2: 3.7903234176268206
[2025-11-25 18:39:59] 2025-11-25 23:39:11,357 | INFO     | current chi2=3.7903234176268206 (change=47.36726692154184 %)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,358 | INFO     | sum of square deviations: 369221220611.45667
[2025-11-25 18:39:59] 2025-11-25 23:39:11,382 | INFO     | sum of deviations: 2835023374051.6455
[2025-11-25 18:39:59] 2025-11-25 23:39:11,382 | INFO     | mean x: 1764081636.0226414
[2025-11-25 18:39:59] 2025-11-25 23:39:11,382 | INFO     | mean y: 3068772.0981132076
[2025-11-25 18:39:59] 2025-11-25 23:39:11,382 | INFO     | intersect: -13542232507.11084
[2025-11-25 18:39:59] 2025-11-25 23:39:11,383 | INFO     | chi2: 3.4966501301617203
[2025-11-25 18:39:59] 2025-11-25 23:39:11,384 | INFO     | current chi2=3.4966501301617203 (change=7.747974383910848 %)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,384 | INFO     | left removable region: 20
[2025-11-25 18:39:59] 2025-11-25 23:39:11,385 | INFO     | sum of square deviations: 347708164851.9888
[2025-11-25 18:39:59] 2025-11-25 23:39:11,404 | INFO     | sum of deviations: 3091810256469.828
[2025-11-25 18:39:59] 2025-11-25 23:39:11,404 | INFO     | mean x: 1764081605.560154
[2025-11-25 18:39:59] 2025-11-25 23:39:11,404 | INFO     | mean y: 3084638.314725698
[2025-11-25 18:39:59] 2025-11-25 23:39:11,404 | INFO     | intersect: -15683074482.05673
[2025-11-25 18:39:59] 2025-11-25 23:39:11,406 | INFO     | chi2: 0.06534791607604004
[2025-11-25 18:39:59] 2025-11-25 23:39:11,406 | INFO     | current memory leak: 8.89 B/s (using 1039 data points, chi2=0.07)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | could have reported an average CPU frequency of 2889 MHz (39 samples)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | ..............................
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | . Timing measurements:
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | . get job = 1 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | . initial setup = 6 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,407 | INFO     | . payload setup = 36 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,408 | INFO     | . stage-in = 0 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,408 | INFO     | . payload execution = 65244 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,408 | INFO     | . stage-out = 3 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,408 | INFO     | . log creation = 0 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,408 | INFO     | ..............................
[2025-11-25 18:39:59] 2025-11-25 23:39:11,585 | INFO     | 
[2025-11-25 18:39:59] 2025-11-25 23:39:11,585 | INFO     | job summary report
[2025-11-25 18:39:59] 2025-11-25 23:39:11,585 | INFO     | --------------------------------------------------
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | PanDA job id: 6896045257
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | task id: 47556173
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | errors: (none)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | pilot state: finished 
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | transexitcode: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | exeerrorcode: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | exeerrordiag: 
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | exitcode: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | exitmsg: OK
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | cpuconsumptiontime: 244942 s
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | nevents: 1000
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | neventsw: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:11,586 | INFO     | pid: 1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | pgrp: 1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | corecount: 9
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | event service: False
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | sizes: {0: 2284030, 1: 2284114, 2: 2284114, 13: 2284313, 24: 2284369, 33: 2284659, 35: 2284843, 65284: 2339868, 65288: 2348923, 65294: 2349113}
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | --------------------------------------------------
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | 
[2025-11-25 18:39:59] 2025-11-25 23:39:11,587 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 18:39:59] 2025-11-25 23:39:11,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | job 6896045257 has completed (purged errors)
[2025-11-25 18:39:59] 2025-11-25 23:39:11,611 | INFO     | overall cleanup function is called
[2025-11-25 18:39:59] 2025-11-25 23:39:12,625 | INFO     | --- collectZombieJob: --- 10, [1927041]
[2025-11-25 18:39:59] 2025-11-25 23:39:12,625 | INFO     | zombie collector waiting for pid 1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:12,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:39:59] 2025-11-25 23:39:12,626 | INFO     | collected zombie processes
[2025-11-25 18:39:59] 2025-11-25 23:39:12,626 | INFO     | will attempt to kill all subprocesses of pid=1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:13,001 | INFO     | process IDs to be killed: [1927041] (in reverse order)
[2025-11-25 18:39:59] 2025-11-25 23:39:13,115 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:39:59] 2025-11-25 23:39:13,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:39:59] 2025-11-25 23:39:13,126 | INFO     | did not find any defunct processes belonging to 1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:13,136 | INFO     | did not find any defunct processes belonging to 1927041
[2025-11-25 18:39:59] 2025-11-25 23:39:13,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:39:59] 2025-11-25 23:39:13,138 | INFO     | ready for new job
[2025-11-25 18:39:59] 2025-11-25 23:39:13,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:39:59] 2025-11-25 23:39:13,141 | INFO     | ***************************************
[2025-11-25 18:39:59] 2025-11-25 23:39:13,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:39:59] 2025-11-25 23:39:13,141 | INFO     | ***************************************
[2025-11-25 18:39:59] 2025-11-25 23:39:13,141 | INFO     | 
[2025-11-25 18:39:59] 2025-11-25 23:39:13,143 | INFO     | architecture information:
[2025-11-25 18:39:59] 2025-11-25 23:39:13,144 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:39:59] 2025-11-25 23:39:13,155 | INFO     | cat /etc/os-release:
[2025-11-25 18:39:59] NAME="CentOS Linux"
[2025-11-25 18:39:59] VERSION="7 (Core)"
[2025-11-25 18:39:59] ID="centos"
[2025-11-25 18:39:59] ID_LIKE="rhel fedora"
[2025-11-25 18:39:59] VERSION_ID="7"
[2025-11-25 18:39:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:39:59] ANSI_COLOR="0;31"
[2025-11-25 18:39:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:39:59] HOME_URL="https://www.centos.org/"
[2025-11-25 18:39:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:39:59] 
[2025-11-25 18:39:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:39:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:39:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:39:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:39:59] 
[2025-11-25 18:39:59] 2025-11-25 23:39:13,155 | INFO     | ***************************************
[2025-11-25 18:39:59] 2025-11-25 23:39:13,658 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 18:39:59] 2025-11-25 23:39:13,677 | INFO     | sufficient remaining disk space (71048364032 B)
[2025-11-25 18:39:59] 2025-11-25 23:39:13,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:39:59] 2025-11-25 23:39:13,678 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:39:59] 2025-11-25 23:39:13,678 | INFO     | update_server=False
[2025-11-25 18:39:59] 2025-11-25 23:39:13,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:39:59] 2025-11-25 23:39:13,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:39:59] 2025-11-25 23:39:13,679 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:39:59] 2025-11-25 23:39:13,679 | INFO     | aborting loop
[2025-11-25 18:39:59] 2025-11-25 23:39:14,074 | INFO     | all data control threads have been joined
[2025-11-25 18:39:59] 2025-11-25 23:39:14,287 | INFO     | all job control threads have been joined
[2025-11-25 18:39:59] 2025-11-25 23:39:14,682 | INFO     | all payload control threads have been joined
[2025-11-25 18:39:59] 2025-11-25 23:39:14,685 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:14,686 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:14,859 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,083 | INFO     | [data] control thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,292 | INFO     | [job] control thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,335 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,590 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,591 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,591 | INFO     | [job] validate thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,592 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,630 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,652 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,685 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:15,688 | INFO     | [payload] control thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:16,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:39:59] 2025-11-25 23:39:16,506 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:39:59] 2025-11-25 23:39:17,511 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:20,081 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:39:59] 2025-11-25 23:39:43,258 | INFO     | PID=1903209 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:39:59] 2025-11-25 23:39:43,258 | INFO     | .. there are 32 such processes running
[2025-11-25 18:39:59] 2025-11-25 23:39:43,259 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:39:59] 2025-11-25 23:39:43,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:39:59] 2025-11-25 23:39:43,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:39:59] 2025-11-25 23:39:52,649 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:39:59] 2025-11-25 23:39:53,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320065738560)>', '<ExcThread(monitor, started 140319567886080)>']
[2025-11-25 18:39:59] 2025-11-25 23:39:54,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:39:59] 2025-11-25 23:39:54,322 | INFO     | [monitor] control thread has ended
[2025-11-25 18:39:59] 2025-11-25 23:39:58,889 | INFO     | all workflow threads have been joined
[2025-11-25 18:39:59] 2025-11-25 23:39:58,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:39:59] 2025-11-25 23:39:58,890 | INFO     | traces error code: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:58,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:39:59] 2025-11-25 23:39:59,031 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:39:59] 2025-11-25 23:39:59,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:39:59] 2025-11-25 23:39:59,037 [wrapper] pilotpid: 1903209
[2025-11-25 18:39:59] 2025-11-25 23:39:59,039 [wrapper] Pilot exit status: 0
[2025-11-25 18:39:59] 2025-11-25 23:39:59,048 [wrapper] pandaids: 6896045257
[2025-11-25 18:39:59] 2025-11-25 23:39:59,221 [wrapper] cleanup supervisor_pilot 1288167 1903210
[2025-11-25 18:39:59] 2025-11-25 23:39:59,266 [wrapper] Test setup, not cleaning
[2025-11-25 18:39:59] 2025-11-25 23:39:59,291 [wrapper] apfmon messages muted
[2025-11-25 18:39:59] 2025-11-25 23:39:59,303 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:39:59] 2025-11-25 23:39:59,307 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:39:59]  *** Error codes and diagnostics ***
[2025-11-25 18:39:59]     "exeErrorCode": 0,
[2025-11-25 18:39:59]     "exeErrorDiag": "",
[2025-11-25 18:39:59]     "pilotErrorCode": 0,
[2025-11-25 18:39:59]     "pilotErrorDiag": "",
[2025-11-25 18:39:59]  *** Listing of results directory ***
[2025-11-25 18:39:59] total 1334616
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:51 queuedata.json
[2025-11-25 18:39:59] -rwx------. 1 boincer umatlas     36292 Nov 24 13:54 runpilot2-wrapper.sh
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:39:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:28 run_atlas
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:28 job.xml
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas 410461226 Nov 25 00:28 EVNT.47483658._003037.pool.root.1
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:28 start_atlas.sh
[2025-11-25 18:39:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:28 shared
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:28 input.tar.gz
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:28 boinc_lockfile
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:28 pandaJob.out
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas        57 Nov 25 00:28 setup.sh.local
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas    991801 Nov 25 00:29 agis_schedconf.cvmfs.json
[2025-11-25 18:39:59] drwx------. 5 boincer umatlas      4096 Nov 25 00:29 pilot3
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas       533 Nov 25 18:31 boinc_task_state.xml
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas      6842 Nov 25 18:37 init_data.xml
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas 931140734 Nov 25 18:38 HITS.47556173._000198.pool.root.1
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas      1058 Nov 25 18:38 memory_monitor_summary.json
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas   1516240 Nov 25 18:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas   2300866 Nov 25 18:39 log.47556173._000198.job.log.tgz.1
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas      8631 Nov 25 18:39 heartbeat.json
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas        95 Nov 25 18:39 pilot_heartbeat.json
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 18:39 boinc_mmap_file
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas        29 Nov 25 18:39 wrapper_checkpoint.txt
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas      4824 Nov 25 18:39 pilotlog.txt
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas   8258360 Nov 25 18:39 log.47556173._000198.job.log.1
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas       353 Nov 25 18:39 output.list
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas       620 Nov 25 18:39 runtime_log
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas  10577920 Nov 25 18:39 result.tar.gz
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 18:39 runtime_log.err
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas       661 Nov 25 18:39 3QkKDmnsqh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmz9IKDmDKcRkm.diag
[2025-11-25 18:39:59] -rw-r--r--. 1 boincer umatlas     21364 Nov 25 18:39 stderr.txt
[2025-11-25 18:39:59] HITS file was successfully produced:
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas 931140734 Nov 25 18:38 shared/HITS.pool.root.1
[2025-11-25 18:39:59]  *** Contents of shared directory: ***
[2025-11-25 18:39:59] total 1321100
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas 410461226 Nov 25 00:28 ATLAS.root_0
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:28 start_atlas.sh
[2025-11-25 18:39:59] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:28 input.tar.gz
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas 931140734 Nov 25 18:38 HITS.pool.root.1
[2025-11-25 18:39:59] -rw-------. 1 boincer umatlas  10577920 Nov 25 18:39 result.tar.gz
18:40:01 (1891320): run_atlas exited; CPU time 246280.946905
18:40:01 (1891320): called boinc_finish(0)

</stderr_txt>
]]>

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