Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:36:56 (3475210): wrapper (7.7.26015): starting
06:36:56 (3475210): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 06:36:56] Arguments: --nthreads 3
[2025-11-25 06:36:56] Threads: 3
[2025-11-25 06:36:56] Checking for CVMFS
[2025-11-25 06:36:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:36:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:36:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:36:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:36:57] 2.9.2.0 2683671 169 66264 153272 2 88 35121783 36864000 0 130560 0 2378968 99.999 10503 17771 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 06:36:57] CVMFS is ok
[2025-11-25 06:36:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:36:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:36:57] Further information can be found at the LHC@home message board.
[2025-11-25 06:36:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:36:57] Checking for apptainer binary...
[2025-11-25 06:36:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:36:57] Running /usr/bin/apptainer --version
[2025-11-25 06:36:57] apptainer version 1.4.1-1.1
[2025-11-25 06:36:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:36:57] thA335
[2025-11-25 06:36:57] apptainer works
[2025-11-25 06:36:57] Set ATHENA_PROC_NUMBER=3
[2025-11-25 06:36:57] Set ATHENA_CORE_NUMBER=3
[2025-11-25 06:36:57] Starting ATLAS job with PandaID=6895367388
[2025-11-25 06:36:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:41:16]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:41:16] 2025-11-25 05:40:24,885 | INFO     | update_server=False
[2025-11-25 06:41:16] 2025-11-25 05:40:24,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:41:16] 2025-11-25 05:40:24,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:41:16] 2025-11-25 05:40:24,886 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:41:16] 2025-11-25 05:40:25,086 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 06:41:16] 2025-11-25 05:40:25,087 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 06:41:16] 2025-11-25 05:40:25,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:41:16] 2025-11-25 05:40:25,088 | INFO     | will abort loop
[2025-11-25 06:41:16] 2025-11-25 05:40:25,265 | INFO     | all data control threads have been joined
[2025-11-25 06:41:16] 2025-11-25 05:40:25,623 | INFO     | all payload control threads have been joined
[2025-11-25 06:41:16] 2025-11-25 05:40:25,889 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:25,891 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,011 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,094 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,184 | INFO     | all job control threads have been joined
[2025-11-25 06:41:16] 2025-11-25 05:40:26,215 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,271 | INFO     | [data] control thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,588 | INFO     | [job] validate thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,629 | INFO     | [payload] control thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,663 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,725 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,757 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,891 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:26,911 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:27,190 | INFO     | [job] control thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:27,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:41:16] 2025-11-25 05:40:31,270 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:41:16] 2025-11-25 05:40:54,835 | INFO     | PID=3478953 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:41:16] 2025-11-25 05:40:54,835 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:41:16] 2025-11-25 05:40:54,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:41:16] 2025-11-25 05:40:54,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:41:16] 2025-11-25 05:41:09,938 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:41:16] 2025-11-25 05:41:11,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587082786624)>', '<ExcThread(monitor, started 140586594055936)>']
[2025-11-25 06:41:16] 2025-11-25 05:41:11,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:41:16] 2025-11-25 05:41:11,926 | INFO     | [monitor] control thread has ended
[2025-11-25 06:41:16] 2025-11-25 05:41:16,162 | INFO     | all workflow threads have been joined
[2025-11-25 06:41:16] 2025-11-25 05:41:16,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:41:16] 2025-11-25 05:41:16,163 | INFO     | traces error code: 0
[2025-11-25 06:41:16] 2025-11-25 05:41:16,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:41:16] 2025-11-25 05:41:16,210 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:41:16] 2025-11-25 05:41:16,213 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:41:16] 2025-11-25 05:41:16,216 [wrapper] pilotpid: 3478953
[2025-11-25 06:41:16] 2025-11-25 05:41:16,219 [wrapper] Pilot exit status: 0
[2025-11-25 06:41:16] 2025-11-25 05:41:16,227 [wrapper] pandaids: 6895367388
[2025-11-25 06:41:16] 2025-11-25 05:41:16,245 [wrapper] cleanup supervisor_pilot 3478959 3478954
[2025-11-25 06:41:16] 2025-11-25 05:41:16,248 [wrapper] Test setup, not cleaning
[2025-11-25 06:41:16] 2025-11-25 05:41:16,251 [wrapper] apfmon messages muted
[2025-11-25 06:41:16] 2025-11-25 05:41:16,253 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:41:16] 2025-11-25 05:41:16,256 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:41:16]  *** Error codes and diagnostics ***
[2025-11-25 06:41:16]     "exeErrorCode": 65,
[2025-11-25 06:41:16]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:41:16]     "pilotErrorCode": 1305,
[2025-11-25 06:41:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:41:16]  *** Listing of results directory ***
[2025-11-25 06:41:16] total 404424
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc    576529 Nov 23 20:15 pilot3.tar.gz
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      5112 Nov 23 20:17 queuedata.json
[2025-11-25 06:41:16] -rwx------ 1 boinc boinc     36292 Nov 23 20:18 runpilot2-wrapper.sh
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc       100 Nov 25 06:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:41:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 06:36 run_atlas
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc       105 Nov 25 06:36 job.xml
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc 409947149 Nov 25 06:36 EVNT.47483658._000863.pool.root.1
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc    590107 Nov 25 06:36 input.tar.gz
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:36 start_atlas.sh
[2025-11-25 06:41:16] drwxrwx--x 2 boinc boinc      4096 Nov 25 06:36 shared
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:36 boinc_setup_complete
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      6196 Nov 25 06:36 init_data.xml
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:36 boinc_lockfile
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      2786 Nov 25 06:36 pandaJob.out
[2025-11-25 06:41:16] -rw------- 1 boinc boinc    991801 Nov 25 06:37 agis_schedconf.cvmfs.json
[2025-11-25 06:41:16] -rw------- 1 boinc boinc   1516227 Nov 25 06:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:41:16] drwx------ 5 boinc boinc      4096 Nov 25 06:37 pilot3
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc       523 Nov 25 06:38 boinc_task_state.xml
[2025-11-25 06:41:16] -rw------- 1 boinc boinc       951 Nov 25 06:38 memory_monitor_summary.json
[2025-11-25 06:41:16] -rw------- 1 boinc boinc     55644 Nov 25 06:38 log.47556137._008493.job.log.tgz.1
[2025-11-25 06:41:16] -rw------- 1 boinc boinc        95 Nov 25 06:40 pilot_heartbeat.json
[2025-11-25 06:41:16] -rw------- 1 boinc boinc      8400 Nov 25 06:40 heartbeat.json
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      8192 Nov 25 06:41 boinc_mmap_file
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc        22 Nov 25 06:41 wrapper_checkpoint.txt
[2025-11-25 06:41:16] -rw------- 1 boinc boinc      4938 Nov 25 06:41 pilotlog.txt
[2025-11-25 06:41:16] -rw------- 1 boinc boinc     93653 Nov 25 06:41 log.47556137._008493.job.log.1
[2025-11-25 06:41:16] -rw------- 1 boinc boinc       186 Nov 25 06:41 output.list
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc       620 Nov 25 06:41 runtime_log
[2025-11-25 06:41:16] -rw------- 1 boinc boinc    163840 Nov 25 06:41 result.tar.gz
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      8744 Nov 25 06:41 runtime_log.err
[2025-11-25 06:41:16] -rw------- 1 boinc boinc       649 Nov 25 06:41 ctdNDmqmUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmc8KKDmjThdUo.diag
[2025-11-25 06:41:16] -rw-r--r-- 1 boinc boinc      8020 Nov 25 06:41 stderr.txt
[2025-11-25 06:41:16] No HITS result produced
[2025-11-25 06:41:16]  *** Contents of shared directory: ***
[2025-11-25 06:41:16] total 401100
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc 409947149 Nov 25 06:36 ATLAS.root_0
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc    590107 Nov 25 06:36 input.tar.gz
[2025-11-25 06:41:16] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:36 start_atlas.sh
[2025-11-25 06:41:16] -rw------- 1 boinc boinc    163840 Nov 25 06:41 result.tar.gz
06:41:17 (3475210): run_atlas exited; CPU time 31.734355
06:41:17 (3475210): called boinc_finish(0)

</stderr_txt>
]]>

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