Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:41:56 (7146): wrapper (7.7.26015): starting
01:41:56 (7146): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 01:41:56] Arguments: --nthreads 12
[2025-11-25 01:41:56] Threads: 12
[2025-11-25 01:41:56] Checking for CVMFS
[2025-11-25 01:41:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:41:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:41:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:41:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:41:56] 2.11.2.0 2998 285849 96336 153273 1 81 15706295 20275201 1 130560 1 128769534 99.967 16842001 14491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:41:56] CVMFS is ok
[2025-11-25 01:41:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:41:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:41:56] Further information can be found at the LHC@home message board.
[2025-11-25 01:41:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:41:56] Checking for apptainer binary...
[2025-11-25 01:41:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:41:56] Running /usr/bin/apptainer --version
[2025-11-25 01:41:56] apptainer version 1.3.2-1.el7
[2025-11-25 01:41:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:41:57] c-205-25.aglt2.org
[2025-11-25 01:41:57] apptainer works
[2025-11-25 01:41:57] Set ATHENA_PROC_NUMBER=12
[2025-11-25 01:41:57] Set ATHENA_CORE_NUMBER=12
[2025-11-25 01:41:57] Starting ATLAS job with PandaID=6893879622
[2025-11-25 01:41:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:50:15]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:50:15] 2025-11-25 13:49:39,766 | INFO     | time since job start (25647s) is within the limit (172800.0s)
[2025-11-25 08:50:15] 2025-11-25 13:49:41,772 | INFO     | time since job start (25649s) is within the limit (172800.0s)
[2025-11-25 08:50:15] 2025-11-25 13:49:41,953 | INFO     | monitor loop #1922: job 0:6893879622 is in state 'finished'
[2025-11-25 08:50:15] 2025-11-25 13:49:41,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,946 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 08:50:15] 2025-11-25 13:49:42,950 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-25 08:50:15] 2025-11-25 13:49:42,952 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893879622/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,953 | INFO     | extracted standard info from prmon json
[2025-11-25 08:50:15] 2025-11-25 13:49:42,954 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:50:15] 2025-11-25 13:49:42,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:50:15] 2025-11-25 13:49:42,960 | INFO     | fitting pss+swap vs Time
[2025-11-25 08:50:15] 2025-11-25 13:49:42,961 | INFO     | sum of square deviations: 22973349991.664104
[2025-11-25 08:50:15] 2025-11-25 13:49:42,965 | INFO     | sum of deviations: 384712614530.0996
[2025-11-25 08:50:15] 2025-11-25 13:49:42,965 | INFO     | mean x: 1764065740.6642857
[2025-11-25 08:50:15] 2025-11-25 13:49:42,965 | INFO     | mean y: 3427394.1
[2025-11-25 08:50:15] 2025-11-25 13:49:42,965 | INFO     | intersect: -29537686267.607403
[2025-11-25 08:50:15] 2025-11-25 13:49:42,966 | INFO     | chi2: 5.263891796755881
[2025-11-25 08:50:15] 2025-11-25 13:49:42,966 | INFO     | sum of square deviations: 22162620951.5276
[2025-11-25 08:50:15] 2025-11-25 13:49:42,970 | INFO     | sum of deviations: 531349964343.4197
[2025-11-25 08:50:15] 2025-11-25 13:49:42,970 | INFO     | mean x: 1764065588.166265
[2025-11-25 08:50:15] 2025-11-25 13:49:42,970 | INFO     | mean y: 3454943.5156626506
[2025-11-25 08:50:15] 2025-11-25 13:49:42,970 | INFO     | intersect: -42290107240.382576
[2025-11-25 08:50:15] 2025-11-25 13:49:42,971 | INFO     | chi2: 2.675629644588274
[2025-11-25 08:50:15] 2025-11-25 13:49:42,971 | INFO     | current chi2=2.675629644588274 (change=49.170124540985896 %)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,971 | INFO     | sum of square deviations: 21371169527.221897
[2025-11-25 08:50:15] 2025-11-25 13:49:42,975 | INFO     | sum of deviations: 565993391930.5538
[2025-11-25 08:50:15] 2025-11-25 13:49:42,975 | INFO     | mean x: 1764065435.6658537
[2025-11-25 08:50:15] 2025-11-25 13:49:42,975 | INFO     | mean y: 3461571.66097561
[2025-11-25 08:50:15] 2025-11-25 13:49:42,975 | INFO     | intersect: -46715992796.43875
[2025-11-25 08:50:15] 2025-11-25 13:49:42,976 | INFO     | chi2: 2.3096285968825576
[2025-11-25 08:50:15] 2025-11-25 13:49:42,976 | INFO     | current chi2=2.3096285968825576 (change=13.679062363731461 %)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,976 | INFO     | right removable region: 409
[2025-11-25 08:50:15] 2025-11-25 13:49:42,976 | INFO     | sum of square deviations: 22162578861.52759
[2025-11-25 08:50:15] 2025-11-25 13:49:42,980 | INFO     | sum of deviations: 256016677654.9903
[2025-11-25 08:50:15] 2025-11-25 13:49:42,980 | INFO     | mean x: 1764065893.166265
[2025-11-25 08:50:15] 2025-11-25 13:49:42,980 | INFO     | mean y: 3451512.942168675
[2025-11-25 08:50:15] 2025-11-25 13:49:42,981 | INFO     | intersect: -20374605208.46687
[2025-11-25 08:50:15] 2025-11-25 13:49:42,981 | INFO     | chi2: 3.100825832588443
[2025-11-25 08:50:15] 2025-11-25 13:49:42,981 | INFO     | current chi2=3.100825832588443 (change=41.092523320873134 %)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,982 | INFO     | sum of square deviations: 21371135855.221897
[2025-11-25 08:50:15] 2025-11-25 13:49:42,985 | INFO     | sum of deviations: 224908500151.79248
[2025-11-25 08:50:15] 2025-11-25 13:49:42,985 | INFO     | mean x: 1764066045.6658537
[2025-11-25 08:50:15] 2025-11-25 13:49:42,985 | INFO     | mean y: 3457499.3780487804
[2025-11-25 08:50:15] 2025-11-25 13:49:42,986 | INFO     | intersect: -18561463485.037785
[2025-11-25 08:50:15] 2025-11-25 13:49:42,986 | INFO     | chi2: 3.0540508947956293
[2025-11-25 08:50:15] 2025-11-25 13:49:42,986 | INFO     | current chi2=3.0540508947956293 (change=1.5084671090271429 %)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,986 | INFO     | left removable region: 20
[2025-11-25 08:50:15] 2025-11-25 13:49:42,987 | INFO     | sum of square deviations: 18252646851.47047
[2025-11-25 08:50:15] 2025-11-25 13:49:42,990 | INFO     | sum of deviations: 364468503410.5246
[2025-11-25 08:50:15] 2025-11-25 13:49:42,990 | INFO     | mean x: 1764066015.1645243
[2025-11-25 08:50:15] 2025-11-25 13:49:42,990 | INFO     | mean y: 3501026.4293059125
[2025-11-25 08:50:15] 2025-11-25 13:49:42,990 | INFO     | intersect: -35221335442.292755
[2025-11-25 08:50:15] 2025-11-25 13:49:42,991 | INFO     | chi2: 0.06126597866763294
[2025-11-25 08:50:15] 2025-11-25 13:49:42,991 | INFO     | current memory leak: 19.97 B/s (using 389 data points, chi2=0.06)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,991 | INFO     | could have reported an average CPU frequency of 2346 MHz (18 samples)
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | ..............................
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . Timing measurements:
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . get job = 0 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . initial setup = 2 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . payload setup = 7 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . stage-in = 0 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . payload execution = 25612 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . stage-out = 3 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,992 | INFO     | . log creation = 0 s
[2025-11-25 08:50:15] 2025-11-25 13:49:42,993 | INFO     | ..............................
[2025-11-25 08:50:15] 2025-11-25 13:49:43,077 | INFO     | 
[2025-11-25 08:50:15] 2025-11-25 13:49:43,078 | INFO     | job summary report
[2025-11-25 08:50:15] 2025-11-25 13:49:43,078 | INFO     | --------------------------------------------------
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | PanDA job id: 6893879622
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | task id: 47523449
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | errors: (none)
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | pilot state: finished 
[2025-11-25 08:50:15] 2025-11-25 13:49:43,079 | INFO     | transexitcode: 0
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | exeerrorcode: 0
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | exeerrordiag: 
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | exitcode: 0
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | exitmsg: OK
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | cpuconsumptiontime: 294008 s
[2025-11-25 08:50:15] 2025-11-25 13:49:43,080 | INFO     | nevents: 1000
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | neventsw: 0
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | pid: 17254
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | pgrp: 17254
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | corecount: 12
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | event service: False
[2025-11-25 08:50:15] 2025-11-25 13:49:43,081 | INFO     | sizes: {0: 2284259, 5: 2284521, 11: 2284577, 25623: 2321758, 25627: 2330757, 25628: 2330813, 25634: 2331187}
[2025-11-25 08:50:15] 2025-11-25 13:49:43,082 | INFO     | --------------------------------------------------
[2025-11-25 08:50:15] 2025-11-25 13:49:43,082 | INFO     | 
[2025-11-25 08:50:15] 2025-11-25 13:49:43,082 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 08:50:15] 2025-11-25 13:49:43,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,110 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,113 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:50:15] 2025-11-25 13:49:43,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,113 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:50:15] 2025-11-25 13:49:43,113 | INFO     | job 6893879622 has completed (purged errors)
[2025-11-25 08:50:15] 2025-11-25 13:49:43,113 | INFO     | overall cleanup function is called
[2025-11-25 08:50:15] 2025-11-25 13:49:44,130 | INFO     | --- collectZombieJob: --- 10, [17254]
[2025-11-25 08:50:15] 2025-11-25 13:49:44,137 | INFO     | zombie collector waiting for pid 17254
[2025-11-25 08:50:15] 2025-11-25 13:49:44,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:50:15] 2025-11-25 13:49:44,137 | INFO     | collected zombie processes
[2025-11-25 08:50:15] 2025-11-25 13:49:44,137 | INFO     | will attempt to kill all subprocesses of pid=17254
[2025-11-25 08:50:15] 2025-11-25 13:49:44,226 | INFO     | process IDs to be killed: [17254] (in reverse order)
[2025-11-25 08:50:15] 2025-11-25 13:49:44,279 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:50:15] 2025-11-25 13:49:44,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:50:15] 2025-11-25 13:49:44,283 | INFO     | did not find any defunct processes belonging to 17254
[2025-11-25 08:50:15] 2025-11-25 13:49:44,286 | INFO     | did not find any defunct processes belonging to 17254
[2025-11-25 08:50:15] 2025-11-25 13:49:44,288 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:50:15] 2025-11-25 13:49:44,288 | INFO     | ready for new job
[2025-11-25 08:50:15] 2025-11-25 13:49:44,289 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:50:15] 2025-11-25 13:49:44,291 | INFO     | ***************************************
[2025-11-25 08:50:15] 2025-11-25 13:49:44,291 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:50:15] 2025-11-25 13:49:44,291 | INFO     | ***************************************
[2025-11-25 08:50:15] 2025-11-25 13:49:44,291 | INFO     | 
[2025-11-25 08:50:15] 2025-11-25 13:49:44,292 | INFO     | architecture information:
[2025-11-25 08:50:15] 2025-11-25 13:49:44,292 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:50:15] 2025-11-25 13:49:44,309 | INFO     | cat /etc/os-release:
[2025-11-25 08:50:15] NAME="CentOS Linux"
[2025-11-25 08:50:15] VERSION="7 (Core)"
[2025-11-25 08:50:15] ID="centos"
[2025-11-25 08:50:15] ID_LIKE="rhel fedora"
[2025-11-25 08:50:15] VERSION_ID="7"
[2025-11-25 08:50:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:50:15] ANSI_COLOR="0;31"
[2025-11-25 08:50:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:50:15] HOME_URL="https://www.centos.org/"
[2025-11-25 08:50:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:50:15] 
[2025-11-25 08:50:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:50:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:50:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:50:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:50:15] 
[2025-11-25 08:50:15] 2025-11-25 13:49:44,310 | INFO     | ***************************************
[2025-11-25 08:50:15] 2025-11-25 13:49:44,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 08:50:15] 2025-11-25 13:49:44,830 | INFO     | sufficient remaining disk space (28254928896 B)
[2025-11-25 08:50:15] 2025-11-25 13:49:44,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:50:15] 2025-11-25 13:49:44,831 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:50:15] 2025-11-25 13:49:44,831 | INFO     | update_server=False
[2025-11-25 08:50:15] 2025-11-25 13:49:44,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:50:15] 2025-11-25 13:49:44,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:50:15] 2025-11-25 13:49:45,337 | INFO     | all job control threads have been joined
[2025-11-25 08:50:15] 2025-11-25 13:49:45,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:50:15] 2025-11-25 13:49:45,462 | INFO     | aborting loop
[2025-11-25 08:50:15] 2025-11-25 13:49:45,497 | INFO     | all data control threads have been joined
[2025-11-25 08:50:15] 2025-11-25 13:49:45,837 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:45,837 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:45,950 | INFO     | all payload control threads have been joined
[2025-11-25 08:50:15] 2025-11-25 13:49:46,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,032 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:50:15] 2025-11-25 13:49:46,275 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,329 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,342 | INFO     | [job] control thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,468 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,503 | INFO     | [data] control thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,601 | INFO     | [job] validate thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:46,955 | INFO     | [payload] control thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:47,000 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:47,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:50:15] 2025-11-25 13:49:47,170 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:47,281 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:48,277 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:51,152 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:50:15] 2025-11-25 13:49:54,175 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:50:15] 2025-11-25 13:49:55,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514733856576)>', '<ExcThread(monitor, started 140514032588544)>']
[2025-11-25 08:50:15] 2025-11-25 13:50:00,535 | INFO     | all workflow threads have been joined
[2025-11-25 08:50:15] 2025-11-25 13:50:00,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:50:15] 2025-11-25 13:50:00,535 | INFO     | traces error code: 0
[2025-11-25 08:50:15] 2025-11-25 13:50:00,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:50:15] 2025-11-25 13:50:14,970 | INFO     | PID=10890 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 08:50:15] 2025-11-25 13:50:14,970 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:50:15] 2025-11-25 13:50:14,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:50:15] 2025-11-25 13:50:14,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:50:15] 2025-11-25 13:50:14,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:50:15] 2025-11-25 13:50:14,971 | INFO     | [monitor] control thread has ended
[2025-11-25 08:50:15] 2025-11-25 13:50:15,062 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:50:15] 2025-11-25 13:50:15,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:50:15] 2025-11-25 13:50:15,069 [wrapper] pilotpid: 10890
[2025-11-25 08:50:15] 2025-11-25 13:50:15,072 [wrapper] Pilot exit status: 0
[2025-11-25 08:50:15] 2025-11-25 13:50:15,085 [wrapper] pandaids: 6893879622
[2025-11-25 08:50:15] 2025-11-25 13:50:15,122 [wrapper] cleanup supervisor_pilot  5841 10891
[2025-11-25 08:50:15] 2025-11-25 13:50:15,125 [wrapper] Test setup, not cleaning
[2025-11-25 08:50:15] 2025-11-25 13:50:15,129 [wrapper] apfmon messages muted
[2025-11-25 08:50:15] 2025-11-25 13:50:15,133 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:50:15] 2025-11-25 13:50:15,137 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:50:15]  *** Error codes and diagnostics ***
[2025-11-25 08:50:15]     "exeErrorCode": 0,
[2025-11-25 08:50:15]     "exeErrorDiag": "",
[2025-11-25 08:50:15]     "pilotErrorCode": 0,
[2025-11-25 08:50:15]     "pilotErrorDiag": "",
[2025-11-25 08:50:15]  *** Listing of results directory ***
[2025-11-25 08:50:15] total 1305136
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 14:10 pilot3.tar.gz
[2025-11-25 08:50:15] -rwx------ 1 boincer umatlas     36292 Nov 20 14:18 runpilot2-wrapper.sh
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 14:18 queuedata.json
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:50:15] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:41 run_atlas
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:41 job.xml
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas 409981134 Nov 25 01:41 EVNT.47493127._000822.pool.root.1
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:41 start_atlas.sh
[2025-11-25 08:50:15] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:41 shared
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas    590098 Nov 25 01:41 input.tar.gz
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:41 boinc_lockfile
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 01:41 pandaJob.out
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas        57 Nov 25 01:41 setup.sh.local
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas    991801 Nov 25 01:42 agis_schedconf.cvmfs.json
[2025-11-25 08:50:15] drwx------ 5 boincer umatlas      4096 Nov 25 01:42 pilot3
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas       532 Nov 25 08:40 boinc_task_state.xml
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas      5956 Nov 25 08:48 init_data.xml
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas 911048043 Nov 25 08:49 HITS.47523449._008214.pool.root.1
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas        95 Nov 25 08:49 pilot_heartbeat.json
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas      1063 Nov 25 08:49 memory_monitor_summary.json
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas   1516240 Nov 25 08:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas   2168059 Nov 25 08:49 log.47523449._008214.job.log.tgz.1
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas      8660 Nov 25 08:49 heartbeat.json
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 08:50 boinc_mmap_file
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas        29 Nov 25 08:50 wrapper_checkpoint.txt
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas       745 Nov 25 08:50 pilotlog.txt
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas   3586123 Nov 25 08:50 log.47523449._008214.job.log.1
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas       353 Nov 25 08:50 output.list
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas       620 Nov 25 08:50 runtime_log
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas   5775360 Nov 25 08:50 result.tar.gz
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 08:50 runtime_log.err
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas       670 Nov 25 08:50 IDkMDm6LPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuzGKDm91XwGm.diag
[2025-11-25 08:50:15] -rw-r--r-- 1 boincer umatlas     21314 Nov 25 08:50 stderr.txt
[2025-11-25 08:50:15] HITS file was successfully produced:
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas 911048043 Nov 25 08:49 shared/HITS.pool.root.1
[2025-11-25 08:50:15]  *** Contents of shared directory: ***
[2025-11-25 08:50:15] total 1296316
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas 409981134 Nov 25 01:41 ATLAS.root_0
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:41 start_atlas.sh
[2025-11-25 08:50:15] -rw-r--r-- 2 boincer umatlas    590098 Nov 25 01:41 input.tar.gz
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas 911048043 Nov 25 08:49 HITS.pool.root.1
[2025-11-25 08:50:15] -rw------- 1 boincer umatlas   5775360 Nov 25 08:50 result.tar.gz
08:50:16 (7146): run_atlas exited; CPU time 287119.689123
08:50:16 (7146): called boinc_finish(0)

</stderr_txt>
]]>

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