Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:47:19 (932999): wrapper (7.7.26015): starting
02:47:19 (932999): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:47:19] Arguments: --nthreads 8
[2025-11-25 02:47:19] Threads: 8
[2025-11-25 02:47:19] Checking for CVMFS
[2025-11-25 02:47:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:47:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:47:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:47:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:47:20] 2.13.2.0 6892 34993 168568 153275 1 594 39486674 40960000 21901 16776704 0 93463610 99.747 56569363 35461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 02:47:20] CVMFS is ok
[2025-11-25 02:47:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:47:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:47:20] Further information can be found at the LHC@home message board.
[2025-11-25 02:47:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:47:20] Checking for apptainer binary...
[2025-11-25 02:47:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:47:20] Running /usr/bin/apptainer --version
[2025-11-25 02:47:20] apptainer version 1.4.4-1.el9
[2025-11-25 02:47:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:47:20] c-212-5.aglt2.org
[2025-11-25 02:47:20] apptainer works
[2025-11-25 02:47:20] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:47:20] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:47:20] Starting ATLAS job with PandaID=6895401436
[2025-11-25 02:47:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:10:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:10:29] 2025-11-26 07:09:23,205 | INFO     | monitor loop #5399: job 0:6895401436 is in state 'finished'
[2025-11-26 02:10:29] 2025-11-26 07:09:23,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:10:29] 2025-11-26 07:09:23,807 | INFO     | time since job start (84107s) is within the limit (172800.0s)
[2025-11-26 02:10:29] 2025-11-26 07:09:25,738 | INFO     | monitor loop #5400: job 0:6895401436 is in state 'finished'
[2025-11-26 02:10:29] 2025-11-26 07:09:25,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:10:29] 2025-11-26 07:09:25,912 | INFO     | PID=938088 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:10:29] 2025-11-26 07:09:25,912 | INFO     | .. there are 20 such processes running
[2025-11-26 02:10:29] 2025-11-26 07:09:26,913 | INFO     | time since job start (84110s) is within the limit (172800.0s)
[2025-11-26 02:10:29] 2025-11-26 07:09:28,244 | INFO     | monitor loop #5401: job 0:6895401436 is in state 'finished'
[2025-11-26 02:10:29] 2025-11-26 07:09:28,244 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:10:29] 2025-11-26 07:09:28,924 | INFO     | time since job start (84112s) is within the limit (172800.0s)
[2025-11-26 02:10:29] 2025-11-26 07:09:30,758 | INFO     | monitor loop #5402: job 0:6895401436 is in state 'finished'
[2025-11-26 02:10:29] 2025-11-26 07:09:30,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:10:29] 2025-11-26 07:09:30,932 | INFO     | time since job start (84114s) is within the limit (172800.0s)
[2025-11-26 02:10:29] 2025-11-26 07:09:32,818 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:10:29] 2025-11-26 07:09:32,823 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3218.526041666668
[2025-11-26 02:10:29] 2025-11-26 07:09:32,865 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895401436/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:10:29] 2025-11-26 07:09:32,866 | INFO     | extracted standard info from prmon json
[2025-11-26 02:10:29] 2025-11-26 07:09:32,866 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:10:29] 2025-11-26 07:09:32,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:10:29] 2025-11-26 07:09:32,918 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:10:29] 2025-11-26 07:09:32,919 | INFO     | sum of square deviations: 811407989635.5796
[2025-11-26 02:10:29] 2025-11-26 07:09:32,950 | INFO     | time since job start (84116s) is within the limit (172800.0s)
[2025-11-26 02:10:29] 2025-11-26 07:09:32,995 | INFO     | sum of deviations: 2527708140441.913
[2025-11-26 02:10:29] 2025-11-26 07:09:32,995 | INFO     | mean x: 1764098889.1712627
[2025-11-26 02:10:29] 2025-11-26 07:09:32,995 | INFO     | mean y: 2857254.881712627
[2025-11-26 02:10:29] 2025-11-26 07:09:32,995 | INFO     | intersect: -5492685283.102693
[2025-11-26 02:10:29] 2025-11-26 07:09:32,996 | INFO     | chi2: 20.10455814564966
[2025-11-26 02:10:29] 2025-11-26 07:09:32,998 | INFO     | sum of square deviations: 802608517734.0659
[2025-11-26 02:10:29] 2025-11-26 07:09:33,077 | INFO     | sum of deviations: 2972744826391.6216
[2025-11-26 02:10:29] 2025-11-26 07:09:33,081 | INFO     | mean x: 1764098736.6773489
[2025-11-26 02:10:29] 2025-11-26 07:09:33,081 | INFO     | mean y: 2864966.184268026
[2025-11-26 02:10:29] 2025-11-26 07:09:33,082 | INFO     | intersect: -6531099322.5415945
[2025-11-26 02:10:29] 2025-11-26 07:09:33,087 | INFO     | chi2: 16.92508468484769
[2025-11-26 02:10:29] 2025-11-26 07:09:33,087 | INFO     | current chi2=16.92508468484769 (change=15.8146895732198 %)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,087 | INFO     | right removable region: 1372
[2025-11-26 02:10:29] 2025-11-26 07:09:33,088 | INFO     | sum of square deviations: 802607112904.0657
[2025-11-26 02:10:29] 2025-11-26 07:09:33,165 | INFO     | sum of deviations: 2047728540505.477
[2025-11-26 02:10:29] 2025-11-26 07:09:33,165 | INFO     | mean x: 1764099041.6773489
[2025-11-26 02:10:29] 2025-11-26 07:09:33,166 | INFO     | mean y: 2865568.8994901674
[2025-11-26 02:10:29] 2025-11-26 07:09:33,166 | INFO     | intersect: -4497961670.03485
[2025-11-26 02:10:29] 2025-11-26 07:09:33,167 | INFO     | chi2: 16.971962549654823
[2025-11-26 02:10:29] 2025-11-26 07:09:33,167 | INFO     | current chi2=16.971962549654823 (change=15.581519242056485 %)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,167 | INFO     | left removable region: 10
[2025-11-26 02:10:29] 2025-11-26 07:09:33,168 | INFO     | sum of square deviations: 783471585911.2576
[2025-11-26 02:10:29] 2025-11-26 07:09:33,248 | INFO     | sum of deviations: 2497747871395.9536
[2025-11-26 02:10:29] 2025-11-26 07:09:33,248 | INFO     | mean x: 1764099011.1872246
[2025-11-26 02:10:29] 2025-11-26 07:09:33,248 | INFO     | mean y: 2876711.364904552
[2025-11-26 02:10:29] 2025-11-26 07:09:33,248 | INFO     | intersect: -5621162027.703915
[2025-11-26 02:10:29] 2025-11-26 07:09:33,249 | INFO     | chi2: 12.973560710451267
[2025-11-26 02:10:29] 2025-11-26 07:09:33,249 | INFO     | current memory leak: 3.19 B/s (using 1362 data points, chi2=12.97)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,250 | INFO     | could have reported an average CPU frequency of 3044 MHz (50 samples)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,250 | INFO     | ..............................
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . Timing measurements:
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . get job = 0 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . initial setup = 2 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . payload setup = 8 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . stage-in = 0 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . payload execution = 84051 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . stage-out = 8 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | . log creation = 2 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,251 | INFO     | ..............................
[2025-11-26 02:10:29] 2025-11-26 07:09:33,453 | INFO     | 
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | job summary report
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | --------------------------------------------------
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | PanDA job id: 6895401436
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | task id: 47556149
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | errors: (none)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:10:29] 2025-11-26 07:09:33,454 | INFO     | pilot state: finished 
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | transexitcode: 0
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | exeerrorcode: 0
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | exeerrordiag: 
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | exitcode: 0
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | exitmsg: OK
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | cpuconsumptiontime: 216991 s
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | nevents: 1000
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | neventsw: 0
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | pid: 953670
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | pgrp: 953670
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | corecount: 8
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | event service: False
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | sizes: {0: 2284310, 1: 2284338, 7: 2284600, 11: 2284628, 84061: 2349231, 84062: 2349258, 84071: 2358441, 84072: 2358497, 84099: 2358743}
[2025-11-26 02:10:29] 2025-11-26 07:09:33,457 | INFO     | --------------------------------------------------
[2025-11-26 02:10:29] 2025-11-26 07:09:33,458 | INFO     | 
[2025-11-26 02:10:29] 2025-11-26 07:09:33,458 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 02:10:29] 2025-11-26 07:09:33,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | job 6895401436 has completed (purged errors)
[2025-11-26 02:10:29] 2025-11-26 07:09:33,718 | INFO     | overall cleanup function is called
[2025-11-26 02:10:29] 2025-11-26 07:09:34,767 | INFO     | --- collectZombieJob: --- 10, [953670]
[2025-11-26 02:10:29] 2025-11-26 07:09:34,767 | INFO     | zombie collector waiting for pid 953670
[2025-11-26 02:10:29] 2025-11-26 07:09:34,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:10:29] 2025-11-26 07:09:34,767 | INFO     | collected zombie processes
[2025-11-26 02:10:29] 2025-11-26 07:09:34,767 | INFO     | will attempt to kill all subprocesses of pid=953670
[2025-11-26 02:10:29] 2025-11-26 07:09:36,027 | INFO     | process IDs to be killed: [953670] (in reverse order)
[2025-11-26 02:10:29] 2025-11-26 07:09:36,983 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:10:29] 2025-11-26 07:09:36,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:10:29] 2025-11-26 07:09:37,057 | INFO     | did not find any defunct processes belonging to 953670
[2025-11-26 02:10:29] 2025-11-26 07:09:37,111 | INFO     | did not find any defunct processes belonging to 953670
[2025-11-26 02:10:29] 2025-11-26 07:09:37,117 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:10:29] 2025-11-26 07:09:37,117 | INFO     | ready for new job
[2025-11-26 02:10:29] 2025-11-26 07:09:37,117 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:10:29] 2025-11-26 07:09:37,140 | INFO     | ***************************************
[2025-11-26 02:10:29] 2025-11-26 07:09:37,140 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:10:29] 2025-11-26 07:09:37,140 | INFO     | ***************************************
[2025-11-26 02:10:29] 2025-11-26 07:09:37,140 | INFO     | 
[2025-11-26 02:10:29] 2025-11-26 07:09:37,149 | INFO     | architecture information:
[2025-11-26 02:10:29] 2025-11-26 07:09:37,157 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:10:29] 2025-11-26 07:09:37,315 | INFO     | cat /etc/os-release:
[2025-11-26 02:10:29] NAME="CentOS Linux"
[2025-11-26 02:10:29] VERSION="7 (Core)"
[2025-11-26 02:10:29] ID="centos"
[2025-11-26 02:10:29] ID_LIKE="rhel fedora"
[2025-11-26 02:10:29] VERSION_ID="7"
[2025-11-26 02:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:10:29] ANSI_COLOR="0;31"
[2025-11-26 02:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:10:29] HOME_URL="https://www.centos.org/"
[2025-11-26 02:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:10:29] 
[2025-11-26 02:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:10:29] 
[2025-11-26 02:10:29] 2025-11-26 07:09:37,315 | INFO     | ***************************************
[2025-11-26 02:10:29] 2025-11-26 07:09:37,819 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 02:10:29] 2025-11-26 07:09:38,008 | INFO     | sufficient remaining disk space (121322340352 B)
[2025-11-26 02:10:29] 2025-11-26 07:09:38,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:10:29] 2025-11-26 07:09:38,008 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:10:29] 2025-11-26 07:09:38,009 | INFO     | update_server=False
[2025-11-26 02:10:29] 2025-11-26 07:09:38,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:10:29] 2025-11-26 07:09:38,310 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:10:29] 2025-11-26 07:09:38,311 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:10:29] 2025-11-26 07:09:38,311 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:10:29] 2025-11-26 07:09:38,311 | INFO     | will abort loop
[2025-11-26 02:10:29] 2025-11-26 07:09:38,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:10:29] 2025-11-26 07:09:38,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:10:29] 2025-11-26 07:09:38,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:10:29] 2025-11-26 07:09:38,974 | INFO     | all payload control threads have been joined
[2025-11-26 02:10:29] 2025-11-26 07:09:39,015 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,099 | INFO     | all data control threads have been joined
[2025-11-26 02:10:29] 2025-11-26 07:09:39,163 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,201 | INFO     | all job control threads have been joined
[2025-11-26 02:10:29] 2025-11-26 07:09:39,230 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,318 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,479 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,480 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:39,980 | INFO     | [payload] control thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,105 | INFO     | [data] control thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,207 | INFO     | [job] control thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,313 | INFO     | [job] validate thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,315 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,321 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:40,608 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:09:42,715 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:10:29] 2025-11-26 07:10:02,832 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:10:29] 2025-11-26 07:10:03,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857950857024)>', '<ExcThread(monitor, started 139857439463168)>']
[2025-11-26 02:10:29] 2025-11-26 07:10:07,030 | INFO     | PID=938088 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:10:29] 2025-11-26 07:10:07,030 | INFO     | .. there are 19 such processes running
[2025-11-26 02:10:29] 2025-11-26 07:10:07,031 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:10:29] 2025-11-26 07:10:07,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:10:29] 2025-11-26 07:10:07,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:10:29] 2025-11-26 07:10:07,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:10:29] 2025-11-26 07:10:07,031 | INFO     | [monitor] control thread has ended
[2025-11-26 02:10:29] 2025-11-26 07:10:08,313 | INFO     | all workflow threads have been joined
[2025-11-26 02:10:29] 2025-11-26 07:10:08,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:10:29] 2025-11-26 07:10:08,313 | INFO     | traces error code: 0
[2025-11-26 02:10:29] 2025-11-26 07:10:08,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:10:29] 2025-11-26 07:10:08,886 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:10:29] 2025-11-26 07:10:08,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:10:29] 2025-11-26 07:10:08,931 [wrapper] pilotpid: 938088
[2025-11-26 02:10:29] 2025-11-26 07:10:08,957 [wrapper] Pilot exit status: 0
[2025-11-26 02:10:29] 2025-11-26 07:10:09,083 [wrapper] pandaids: 6895401436
[2025-11-26 02:10:29] 2025-11-26 07:10:09,794 [wrapper] cleanup supervisor_pilot  677928 938089
[2025-11-26 02:10:29] 2025-11-26 07:10:09,836 [wrapper] Test setup, not cleaning
[2025-11-26 02:10:29] 2025-11-26 07:10:09,878 [wrapper] apfmon messages muted
[2025-11-26 02:10:29] 2025-11-26 07:10:09,883 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:10:29] 2025-11-26 07:10:09,885 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:10:29]  *** Error codes and diagnostics ***
[2025-11-26 02:10:29]     "exeErrorCode": 0,
[2025-11-26 02:10:29]     "exeErrorDiag": "",
[2025-11-26 02:10:29]     "pilotErrorCode": 0,
[2025-11-26 02:10:29]     "pilotErrorDiag": "",
[2025-11-26 02:10:29]  *** Listing of results directory ***
[2025-11-26 02:10:29] total 1331500
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 02:32 pilot3.tar.gz
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 02:39 queuedata.json
[2025-11-26 02:10:29] -rwx------. 1 boincer umatlas     36292 Nov 24 02:40 runpilot2-wrapper.sh
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas       100 Nov 25 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:10:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 02:47 run_atlas
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas       105 Nov 25 02:47 job.xml
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas 409767628 Nov 25 02:47 EVNT.47483658._001263.pool.root.1
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:47 start_atlas.sh
[2025-11-26 02:10:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 02:47 shared
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 02:47 input.tar.gz
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas         0 Nov 25 02:47 boinc_lockfile
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 02:47 pandaJob.out
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas        57 Nov 25 02:47 setup.sh.local
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas    991830 Nov 25 02:47 agis_schedconf.cvmfs.json
[2025-11-26 02:10:29] drwx------. 5 boincer umatlas      4096 Nov 25 02:47 pilot3
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas       533 Nov 26 01:21 boinc_task_state.xml
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 02:04 init_data.xml
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas 922895172 Nov 26 02:07 HITS.47556149._002500.pool.root.1
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas      1074 Nov 26 02:08 memory_monitor_summary.json
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas   2443296 Nov 26 02:09 log.47556149._002500.job.log.tgz.1
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas        95 Nov 26 02:09 pilot_heartbeat.json
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas      8632 Nov 26 02:09 heartbeat.json
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas      5010 Nov 26 02:10 pilotlog.txt
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas  10991003 Nov 26 02:10 log.47556149._002500.job.log.1
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas       353 Nov 26 02:10 output.list
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:10 runtime_log
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas  13455360 Nov 26 02:10 result.tar.gz
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 02:10 runtime_log.err
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas       664 Nov 26 02:10 4QnNDmGMgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVWLKDm47ZKNm.diag
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:10 wrapper_checkpoint.txt
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:10 boinc_mmap_file
[2025-11-26 02:10:29] -rw-r--r--. 1 boincer umatlas     21823 Nov 26 02:10 stderr.txt
[2025-11-26 02:10:29] HITS file was successfully produced:
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas 922895172 Nov 26 02:07 shared/HITS.pool.root.1
[2025-11-26 02:10:29]  *** Contents of shared directory: ***
[2025-11-26 02:10:29] total 1315176
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas 409767628 Nov 25 02:47 ATLAS.root_0
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 02:47 start_atlas.sh
[2025-11-26 02:10:29] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 02:47 input.tar.gz
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas 922895172 Nov 26 02:07 HITS.pool.root.1
[2025-11-26 02:10:29] -rw-------. 1 boincer umatlas  13455360 Nov 26 02:10 result.tar.gz
02:10:31 (932999): run_atlas exited; CPU time 217490.610175
02:10:31 (932999): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN