Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:31 (3852986): wrapper (7.7.26015): starting
00:04:31 (3852986): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:04:31] Arguments: --nthreads 8
[2025-11-27 00:04:31] Threads: 8
[2025-11-27 00:04:31] Checking for CVMFS
[2025-11-27 00:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:32] 2.13.2.0 6468 34761 444240 153347 1 265 38468482 40960001 17678 16776704 0 122457852 99.594 131110337 38879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:04:32] CVMFS is ok
[2025-11-27 00:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:32] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:32] Checking for apptainer binary...
[2025-11-27 00:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:32] Running /usr/bin/apptainer --version
[2025-11-27 00:04:32] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:32] c-206-41.aglt2.org
[2025-11-27 00:04:32] apptainer works
[2025-11-27 00:04:32] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:04:32] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:04:32] Starting ATLAS job with PandaID=6896044972
[2025-11-27 00:04:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:40:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:40:38] 2025-11-27 22:31:59,146 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:40:38] 2025-11-27 22:31:59,146 | INFO     | job 6896044972 has state=finished
[2025-11-27 19:40:38] 2025-11-27 22:31:59,146 | INFO     | preparing for final server update for job 6896044972 in state='finished'
[2025-11-27 19:40:38] 2025-11-27 22:31:59,146 | INFO     | this job has now completed (state=finished)
[2025-11-27 19:40:38] 2025-11-27 22:31:59,147 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 19:40:38] 2025-11-27 22:31:59,147 | INFO     | log transfer has been attempted: DONE
[2025-11-27 19:40:38] 2025-11-27 22:31:59,147 | INFO     | job 6896044972 has finished - writing final server update
[2025-11-27 19:40:38] 2025-11-27 22:31:59,147 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 19:40:38] 2025-11-27 22:31:59,148 | INFO     | executing command: lscpu
[2025-11-27 19:40:38] 2025-11-27 22:31:59,199 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 19:40:38] 2025-11-27 22:32:00,048 | INFO     | time since job start (62824s) is within the limit (172800.0s)
[2025-11-27 19:40:38] 2025-11-27 22:32:00,744 | INFO     | monitor loop #4114: job 0:6896044972 is in state 'finished'
[2025-11-27 19:40:38] 2025-11-27 22:32:00,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:40:38] 2025-11-27 22:32:02,055 | INFO     | time since job start (62826s) is within the limit (172800.0s)
[2025-11-27 19:40:38] 2025-11-27 22:32:03,249 | INFO     | monitor loop #4115: job 0:6896044972 is in state 'finished'
[2025-11-27 19:40:38] 2025-11-27 22:32:03,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:40:38] 2025-11-27 22:32:04,062 | INFO     | time since job start (62828s) is within the limit (172800.0s)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,203 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:40:38] 2025-11-27 22:32:05,212 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3209.171046875
[2025-11-27 19:40:38] 2025-11-27 22:32:05,234 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896044972/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,235 | INFO     | extracted standard info from prmon json
[2025-11-27 19:40:38] 2025-11-27 22:32:05,235 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:40:38] 2025-11-27 22:32:05,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:40:38] 2025-11-27 22:32:05,252 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:40:38] 2025-11-27 22:32:05,253 | INFO     | sum of square deviations: 337846633237.8211
[2025-11-27 19:40:38] 2025-11-27 22:32:05,274 | INFO     | sum of deviations: 1354728491548.4849
[2025-11-27 19:40:38] 2025-11-27 22:32:05,274 | INFO     | mean x: 1764251310.595724
[2025-11-27 19:40:38] 2025-11-27 22:32:05,274 | INFO     | mean y: 2901651.97473275
[2025-11-27 19:40:38] 2025-11-27 22:32:05,274 | INFO     | intersect: -7071555458.371333
[2025-11-27 19:40:38] 2025-11-27 22:32:05,275 | INFO     | chi2: 16.25895089899835
[2025-11-27 19:40:38] 2025-11-27 22:32:05,276 | INFO     | sum of square deviations: 332946093305.0257
[2025-11-27 19:40:38] 2025-11-27 22:32:05,296 | INFO     | sum of deviations: 1682078455676.477
[2025-11-27 19:40:38] 2025-11-27 22:32:05,296 | INFO     | mean x: 1764251158.1035156
[2025-11-27 19:40:38] 2025-11-27 22:32:05,297 | INFO     | mean y: 2911839.919921875
[2025-11-27 19:40:38] 2025-11-27 22:32:05,297 | INFO     | intersect: -8910269372.059185
[2025-11-27 19:40:38] 2025-11-27 22:32:05,298 | INFO     | chi2: 13.245937272201148
[2025-11-27 19:40:38] 2025-11-27 22:32:05,298 | INFO     | current chi2=13.245937272201148 (change=18.53141476048631 %)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,298 | INFO     | right removable region: 1023
[2025-11-27 19:40:38] 2025-11-27 22:32:05,299 | INFO     | sum of square deviations: 332945529467.4227
[2025-11-27 19:40:38] 2025-11-27 22:32:05,326 | INFO     | sum of deviations: 1085357706122.0635
[2025-11-27 19:40:38] 2025-11-27 22:32:05,326 | INFO     | mean x: 1764251463.0966797
[2025-11-27 19:40:38] 2025-11-27 22:32:05,326 | INFO     | mean y: 2910021.3330078125
[2025-11-27 19:40:38] 2025-11-27 22:32:05,326 | INFO     | intersect: -5748312781.00369
[2025-11-27 19:40:38] 2025-11-27 22:32:05,330 | INFO     | chi2: 14.166282329991267
[2025-11-27 19:40:38] 2025-11-27 22:32:05,331 | INFO     | current chi2=14.166282329991267 (change=12.870870832976095 %)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,331 | INFO     | left removable region: 10
[2025-11-27 19:40:38] 2025-11-27 22:32:05,332 | INFO     | sum of square deviations: 322332338245.516
[2025-11-27 19:40:38] 2025-11-27 22:32:05,359 | INFO     | sum of deviations: 1391256589527.1592
[2025-11-27 19:40:38] 2025-11-27 22:32:05,359 | INFO     | mean x: 1764251432.5873642
[2025-11-27 19:40:38] 2025-11-27 22:32:05,359 | INFO     | mean y: 2925699.0434353407
[2025-11-27 19:40:38] 2025-11-27 22:32:05,359 | INFO     | intersect: -7611967812.82109
[2025-11-27 19:40:38] 2025-11-27 22:32:05,360 | INFO     | chi2: 10.264675543148337
[2025-11-27 19:40:38] 2025-11-27 22:32:05,360 | INFO     | current memory leak: 4.32 B/s (using 1013 data points, chi2=10.26)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,361 | INFO     | could have reported an average CPU frequency of 3210 MHz (38 samples)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | ..............................
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . Timing measurements:
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . get job = 0 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . initial setup = 3 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . payload setup = 13 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . stage-in = 0 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . payload execution = 62764 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . stage-out = 4 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | . log creation = 0 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,362 | INFO     | ..............................
[2025-11-27 19:40:38] 2025-11-27 22:32:05,564 | INFO     | 
[2025-11-27 19:40:38] 2025-11-27 22:32:05,564 | INFO     | job summary report
[2025-11-27 19:40:38] 2025-11-27 22:32:05,564 | INFO     | --------------------------------------------------
[2025-11-27 19:40:38] 2025-11-27 22:32:05,564 | INFO     | PanDA job id: 6896044972
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | task id: 47556185
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | errors: (none)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | pilot state: finished 
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | transexitcode: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | exeerrorcode: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | exeerrordiag: 
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | exitcode: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | exitmsg: OK
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | cpuconsumptiontime: 199806 s
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | nevents: 1000
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | neventsw: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | pid: 3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | pgrp: 3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:05,565 | INFO     | corecount: 8
[2025-11-27 19:40:38] 2025-11-27 22:32:05,566 | INFO     | event service: False
[2025-11-27 19:40:38] 2025-11-27 22:32:05,566 | INFO     | sizes: {0: 2284311, 11: 2284311, 12: 2284601, 22: 2284629, 62781: 2340086, 62787: 2349080, 62789: 2349264, 62795: 2349510}
[2025-11-27 19:40:38] 2025-11-27 22:32:05,566 | INFO     | --------------------------------------------------
[2025-11-27 19:40:38] 2025-11-27 22:32:05,566 | INFO     | 
[2025-11-27 19:40:38] 2025-11-27 22:32:05,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 19:40:38] 2025-11-27 22:32:05,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | job 6896044972 has completed (purged errors)
[2025-11-27 19:40:38] 2025-11-27 22:32:05,596 | INFO     | overall cleanup function is called
[2025-11-27 19:40:38] 2025-11-27 22:32:06,613 | INFO     | --- collectZombieJob: --- 10, [3895117]
[2025-11-27 19:40:38] 2025-11-27 22:32:06,613 | INFO     | zombie collector waiting for pid 3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:06,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:40:38] 2025-11-27 22:32:06,613 | INFO     | collected zombie processes
[2025-11-27 19:40:38] 2025-11-27 22:32:06,614 | INFO     | will attempt to kill all subprocesses of pid=3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:07,364 | INFO     | process IDs to be killed: [3895117] (in reverse order)
[2025-11-27 19:40:38] 2025-11-27 22:32:07,597 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:40:38] 2025-11-27 22:32:07,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:40:38] 2025-11-27 22:32:07,612 | INFO     | did not find any defunct processes belonging to 3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:07,647 | INFO     | did not find any defunct processes belonging to 3895117
[2025-11-27 19:40:38] 2025-11-27 22:32:07,648 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:40:38] 2025-11-27 22:32:07,648 | INFO     | ready for new job
[2025-11-27 19:40:38] 2025-11-27 22:32:07,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:40:38] 2025-11-27 22:32:07,691 | INFO     | ***************************************
[2025-11-27 19:40:38] 2025-11-27 22:32:07,691 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:40:38] 2025-11-27 22:32:07,701 | INFO     | ***************************************
[2025-11-27 19:40:38] 2025-11-27 22:32:07,701 | INFO     | 
[2025-11-27 19:40:38] 2025-11-27 22:32:07,709 | INFO     | architecture information:
[2025-11-27 19:40:38] 2025-11-27 22:32:07,713 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:40:38] 2025-11-27 22:32:07,745 | INFO     | cat /etc/os-release:
[2025-11-27 19:40:38] NAME="CentOS Linux"
[2025-11-27 19:40:38] VERSION="7 (Core)"
[2025-11-27 19:40:38] ID="centos"
[2025-11-27 19:40:38] ID_LIKE="rhel fedora"
[2025-11-27 19:40:38] VERSION_ID="7"
[2025-11-27 19:40:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:40:38] ANSI_COLOR="0;31"
[2025-11-27 19:40:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:40:38] HOME_URL="https://www.centos.org/"
[2025-11-27 19:40:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:40:38] 
[2025-11-27 19:40:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:40:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:40:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:40:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:40:38] 
[2025-11-27 19:40:38] 2025-11-27 22:32:07,745 | INFO     | ***************************************
[2025-11-27 19:40:38] 2025-11-27 22:32:08,249 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 19:40:38] 2025-11-27 22:32:08,384 | INFO     | sufficient remaining disk space (80724623360 B)
[2025-11-27 19:40:38] 2025-11-27 22:32:08,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:40:38] 2025-11-27 22:32:08,384 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:40:38] 2025-11-27 22:32:08,384 | INFO     | update_server=False
[2025-11-27 19:40:38] 2025-11-27 22:32:08,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:40:38] 2025-11-27 22:32:08,408 | INFO     | all payload control threads have been joined
[2025-11-27 19:40:38] 2025-11-27 22:32:08,848 | INFO     | all data control threads have been joined
[2025-11-27 19:40:38] 2025-11-27 22:32:09,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:40:38] 2025-11-27 22:32:09,296 | INFO     | aborting loop
[2025-11-27 19:40:38] 2025-11-27 22:32:09,389 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:09,414 | INFO     | [payload] control thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:09,502 | INFO     | [job] validate thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:09,614 | INFO     | all job control threads have been joined
[2025-11-27 19:40:38] 2025-11-27 22:32:09,623 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:09,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:40:38] 2025-11-27 22:32:09,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:40:38] 2025-11-27 22:32:09,853 | INFO     | [data] control thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,065 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,304 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,316 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:40:38] 2025-11-27 22:32:10,587 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,622 | INFO     | [job] control thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,831 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:10,991 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:11,506 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:11,754 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:13,679 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:40:38] 2025-11-27 22:32:37,657 | INFO     | PID=3862802 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:40:38] 2025-11-27 22:32:37,658 | INFO     | .. there are 19 such processes running
[2025-11-27 19:40:38] 2025-11-27 22:32:37,658 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:40:38] 2025-11-27 22:32:37,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:40:38] 2025-11-27 22:32:37,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:40:38] 2025-11-27 22:32:46,439 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:40:38] 2025-11-27 22:32:47,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069824878400)>', '<ExcThread(monitor, started 140068731737856)>']
[2025-11-27 19:40:38] 2025-11-27 22:32:47,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:40:38] 2025-11-27 22:32:47,714 | INFO     | [monitor] control thread has ended
[2025-11-27 19:40:38] 2025-11-27 22:32:52,354 | INFO     | all workflow threads have been joined
[2025-11-27 19:40:38] 2025-11-27 22:32:52,354 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:40:38] 2025-11-27 22:32:52,356 | INFO     | traces error code: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:52,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:40:38] 2025-11-27 22:32:52,589 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:40:38] 2025-11-27 22:32:52,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:40:38] 2025-11-27 22:32:52,601 [wrapper] pilotpid: 3862802
[2025-11-27 19:40:38] 2025-11-27 22:32:52,603 [wrapper] Pilot exit status: 0
[2025-11-27 19:40:38] 2025-11-27 22:32:52,729 [wrapper] pandaids: 6896044972
[2025-11-27 19:40:38] 2025-11-27 22:32:52,796 [wrapper] cleanup supervisor_pilot 2196361 3862803
[2025-11-27 19:40:38] 2025-11-27 22:32:52,800 [wrapper] Test setup, not cleaning
[2025-11-27 19:40:38] 2025-11-27 22:32:52,813 [wrapper] apfmon messages muted
[2025-11-27 19:40:38] 2025-11-27 22:32:52,848 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:40:38] 2025-11-27 22:32:52,859 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:40:38]  *** Error codes and diagnostics ***
[2025-11-27 19:40:38]     "exeErrorCode": 0,
[2025-11-27 19:40:38]     "exeErrorDiag": "",
[2025-11-27 19:40:38]     "pilotErrorCode": 0,
[2025-11-27 19:40:38]     "pilotErrorDiag": "",
[2025-11-27 19:40:38]  *** Listing of results directory ***
[2025-11-27 19:40:38] total 1319792
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:41 queuedata.json
[2025-11-27 19:40:38] -rwx------. 1 boincer umatlas     36292 Nov 24 13:44 runpilot2-wrapper.sh
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:40:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas 410938372 Nov 27 00:04 EVNT.47483658._004239.pool.root.1
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 19:40:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:04 input.tar.gz
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:04 pandaJob.out
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 19:40:38] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:06 boinc_task_state.xml
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas 915443274 Nov 27 17:31 HITS.47556185._000022.pool.root.1
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas      1060 Nov 27 17:31 memory_monitor_summary.json
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas   2187488 Nov 27 17:31 log.47556185._000022.job.log.tgz.1
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas      8590 Nov 27 17:32 heartbeat.json
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas        95 Nov 27 17:32 pilot_heartbeat.json
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas      4824 Nov 27 17:32 pilotlog.txt
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas   8396046 Nov 27 17:32 log.47556185._000022.job.log.1
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas       353 Nov 27 17:32 output.list
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:32 runtime_log
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas  10598400 Nov 27 17:32 result.tar.gz
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 17:32 runtime_log.err
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas       663 Nov 27 17:32 1SaMDmRjqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbqLKDmPRQXJo.diag
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas      6903 Nov 27 19:40 init_data.xml
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:40 boinc_mmap_file
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:40 wrapper_checkpoint.txt
[2025-11-27 19:40:38] -rw-r--r--. 1 boincer umatlas     21825 Nov 27 19:40 stderr.txt
[2025-11-27 19:40:38] HITS file was successfully produced:
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas 915443274 Nov 27 17:31 shared/HITS.pool.root.1
[2025-11-27 19:40:38]  *** Contents of shared directory: ***
[2025-11-27 19:40:38] total 1306252
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas 410938372 Nov 27 00:04 ATLAS.root_0
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 19:40:38] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:04 input.tar.gz
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas 915443274 Nov 27 17:31 HITS.pool.root.1
[2025-11-27 19:40:38] -rw-------. 1 boincer umatlas  10598400 Nov 27 17:32 result.tar.gz
19:40:40 (3852986): run_atlas exited; CPU time 199897.934705
19:40:40 (3852986): called boinc_finish(0)

</stderr_txt>
]]>

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