Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:45:57 (2021844): wrapper (7.7.26015): starting
15:45:57 (2021844): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 15:45:57] Arguments: --nthreads 9
[2025-11-25 15:45:57] Threads: 9
[2025-11-25 15:45:57] Checking for CVMFS
[2025-11-25 15:45:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:45:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:45:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:45:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:45:59] 2.13.3.0 11322 29107 233864 153297 0 84 24352266 32935936 24053 16776704 0 48019235 99.600 47433478 38381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 15:45:59] CVMFS is ok
[2025-11-25 15:45:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:45:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:45:59] Further information can be found at the LHC@home message board.
[2025-11-25 15:45:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:45:59] Checking for apptainer binary...
[2025-11-25 15:45:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:45:59] Running /usr/bin/apptainer --version
[2025-11-25 15:45:59] apptainer version 1.4.4-1.el9
[2025-11-25 15:45:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:46:00] c6-1-26-4.aglt2.org
[2025-11-25 15:46:00] apptainer works
[2025-11-25 15:46:00] Set ATHENA_PROC_NUMBER=9
[2025-11-25 15:46:00] Set ATHENA_CORE_NUMBER=9
[2025-11-25 15:46:00] Starting ATLAS job with PandaID=6895401401
[2025-11-25 15:46:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:00:22 (2100236): wrapper (7.7.26015): starting
16:00:22 (2100236): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 16:00:22] Arguments: --nthreads 9
[2025-11-25 16:00:22] Threads: 9
[2025-11-25 16:00:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:00:22] Checking for CVMFS
[2025-11-25 16:00:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:00:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:00:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:00:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:00:22] 2.13.3.0 11322 29122 231148 153297 2 101 24392331 32935936 20462 16776704 0 48145505 99.601 47433492 38381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:00:22] CVMFS is ok
[2025-11-25 16:00:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:00:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:00:22] Further information can be found at the LHC@home message board.
[2025-11-25 16:00:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:00:22] Checking for apptainer binary...
[2025-11-25 16:00:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:00:22] Running /usr/bin/apptainer --version
[2025-11-25 16:00:22] apptainer version 1.4.4-1.el9
[2025-11-25 16:00:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:00:22] c6-1-26-4.aglt2.org
[2025-11-25 16:00:22] apptainer works
[2025-11-25 16:00:22] Set ATHENA_PROC_NUMBER=9
[2025-11-25 16:00:22] Set ATHENA_CORE_NUMBER=9
[2025-11-25 16:00:22] Starting ATLAS job with PandaID=6895401401
[2025-11-25 16:00:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:30:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:30:31] 2025-11-26 14:29:24,022 | INFO     | monitor loop #3816: job 0:6895401401 is in state 'finished'
[2025-11-26 09:30:31] 2025-11-26 14:29:24,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:30:31] 2025-11-26 14:29:24,200 | INFO     | time since job start (62931s) is within the limit (172800.0s)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,764 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:30:31] 2025-11-26 14:29:25,768 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2940.3772857142853
[2025-11-26 09:30:31] 2025-11-26 14:29:25,777 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895401401/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,778 | INFO     | extracted standard info from prmon json
[2025-11-26 09:30:31] 2025-11-26 14:29:25,778 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:30:31] 2025-11-26 14:29:25,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:30:31] 2025-11-26 14:29:25,793 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:30:31] 2025-11-26 14:29:25,794 | INFO     | sum of square deviations: 340816205668.46075
[2025-11-26 09:30:31] 2025-11-26 14:29:25,813 | INFO     | sum of deviations: 2730114175519.6196
[2025-11-26 09:30:31] 2025-11-26 14:29:25,813 | INFO     | mean x: 1764135905.8042636
[2025-11-26 09:30:31] 2025-11-26 14:29:25,813 | INFO     | mean y: 3149747.270348837
[2025-11-26 09:30:31] 2025-11-26 14:29:25,813 | INFO     | intersect: -14128491776.444513
[2025-11-26 09:30:31] 2025-11-26 14:29:25,814 | INFO     | chi2: 5.930517081030216
[2025-11-26 09:30:31] 2025-11-26 14:29:25,816 | INFO     | sum of square deviations: 335887201291.7838
[2025-11-26 09:30:31] 2025-11-26 14:29:25,834 | INFO     | sum of deviations: 3101829583932.4937
[2025-11-26 09:30:31] 2025-11-26 14:29:25,834 | INFO     | mean x: 1764135753.315482
[2025-11-26 09:30:31] 2025-11-26 14:29:25,834 | INFO     | mean y: 3161242.554040896
[2025-11-26 09:30:31] 2025-11-26 14:29:25,834 | INFO     | intersect: -16288166467.05241
[2025-11-26 09:30:31] 2025-11-26 14:29:25,836 | INFO     | chi2: 2.7528929829615163
[2025-11-26 09:30:31] 2025-11-26 14:29:25,836 | INFO     | current chi2=2.7528929829615163 (change=53.58089445915062 %)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,837 | INFO     | sum of square deviations: 331005965252.34534
[2025-11-26 09:30:31] 2025-11-26 14:29:25,855 | INFO     | sum of deviations: 3229732380084.999
[2025-11-26 09:30:31] 2025-11-26 14:29:25,855 | INFO     | mean x: 1764135600.8268101
[2025-11-26 09:30:31] 2025-11-26 14:29:25,855 | INFO     | mean y: 3165234.0
[2025-11-26 09:30:31] 2025-11-26 14:29:25,855 | INFO     | intersect: -17210077036.444798
[2025-11-26 09:30:31] 2025-11-26 14:29:25,856 | INFO     | chi2: 2.1809700981898965
[2025-11-26 09:30:31] 2025-11-26 14:29:25,856 | INFO     | current chi2=2.1809700981898965 (change=20.775340280621975 %)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,856 | INFO     | right removable region: 1021
[2025-11-26 09:30:31] 2025-11-26 14:29:25,858 | INFO     | sum of square deviations: 335885876257.04193
[2025-11-26 09:30:31] 2025-11-26 14:29:25,875 | INFO     | sum of deviations: 2455142281500.7817
[2025-11-26 09:30:31] 2025-11-26 14:29:25,876 | INFO     | mean x: 1764136058.3135345
[2025-11-26 09:30:31] 2025-11-26 14:29:25,876 | INFO     | mean y: 3158240.9074975657
[2025-11-26 09:30:31] 2025-11-26 14:29:25,876 | INFO     | intersect: -12891712705.589712
[2025-11-26 09:30:31] 2025-11-26 14:29:25,877 | INFO     | chi2: 4.11626281704054
[2025-11-26 09:30:31] 2025-11-26 14:29:25,877 | INFO     | current chi2=4.11626281704054 (change=30.591839450102626 %)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,878 | INFO     | sum of square deviations: 331003628676.1491
[2025-11-26 09:30:31] 2025-11-26 14:29:25,896 | INFO     | sum of deviations: 2359503164860.262
[2025-11-26 09:30:31] 2025-11-26 14:29:25,896 | INFO     | mean x: 1764136210.818004
[2025-11-26 09:30:31] 2025-11-26 14:29:25,896 | INFO     | mean y: 3161227.4637964773
[2025-11-26 09:30:31] 2025-11-26 14:29:25,896 | INFO     | intersect: -12572184213.060688
[2025-11-26 09:30:31] 2025-11-26 14:29:25,897 | INFO     | chi2: 4.038078846870063
[2025-11-26 09:30:31] 2025-11-26 14:29:25,898 | INFO     | current chi2=4.038078846870063 (change=1.899392085627058 %)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,898 | INFO     | left removable region: 20
[2025-11-26 09:30:31] 2025-11-26 14:29:25,899 | INFO     | sum of square deviations: 311017148146.7112
[2025-11-26 09:30:31] 2025-11-26 14:29:25,915 | INFO     | sum of deviations: 2719215693318.4365
[2025-11-26 09:30:31] 2025-11-26 14:29:25,916 | INFO     | mean x: 1764136180.3466535
[2025-11-26 09:30:31] 2025-11-26 14:29:25,916 | INFO     | mean y: 3181836.817182817
[2025-11-26 09:30:31] 2025-11-26 14:29:25,916 | INFO     | intersect: -15420619761.693455
[2025-11-26 09:30:31] 2025-11-26 14:29:25,917 | INFO     | chi2: 0.21344952840184184
[2025-11-26 09:30:31] 2025-11-26 14:29:25,917 | INFO     | current memory leak: 8.74 B/s (using 1001 data points, chi2=0.21)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,918 | INFO     | could have reported an average CPU frequency of 2999 MHz (38 samples)
[2025-11-26 09:30:31] 2025-11-26 14:29:25,918 | INFO     | ..............................
[2025-11-26 09:30:31] 2025-11-26 14:29:25,918 | INFO     | . Timing measurements:
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . get job = 0 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . initial setup = 1 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . payload setup = 5 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . stage-in = 0 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . payload execution = 62898 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . stage-out = 3 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | . log creation = 0 s
[2025-11-26 09:30:31] 2025-11-26 14:29:25,919 | INFO     | ..............................
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | 
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | job summary report
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | --------------------------------------------------
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | PanDA job id: 6895401401
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | task id: 47556149
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | errors: (none)
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | pilot state: finished 
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | transexitcode: 0
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | exeerrorcode: 0
[2025-11-26 09:30:31] 2025-11-26 14:29:26,003 | INFO     | exeerrordiag: 
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | exitcode: 0
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | exitmsg: OK
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | cpuconsumptiontime: 236926 s
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | nevents: 1000
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | neventsw: 0
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | pid: 2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | pgrp: 2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | corecount: 9
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | event service: False
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | sizes: {0: 2284150, 1: 2284292, 4: 2284554, 11: 2284582, 62907: 2338997, 62908: 2338996, 62912: 2348174, 62913: 2348230, 62918: 2348476}
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | --------------------------------------------------
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | 
[2025-11-26 09:30:31] 2025-11-26 14:29:26,004 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:30:31] 2025-11-26 14:29:26,025 | INFO     | job 6895401401 has completed (purged errors)
[2025-11-26 09:30:31] 2025-11-26 14:29:26,026 | INFO     | overall cleanup function is called
[2025-11-26 09:30:31] 2025-11-26 14:29:27,042 | INFO     | --- collectZombieJob: --- 10, [2150529]
[2025-11-26 09:30:31] 2025-11-26 14:29:27,042 | INFO     | zombie collector waiting for pid 2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:27,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:30:31] 2025-11-26 14:29:27,043 | INFO     | collected zombie processes
[2025-11-26 09:30:31] 2025-11-26 14:29:27,043 | INFO     | will attempt to kill all subprocesses of pid=2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:27,380 | INFO     | process IDs to be killed: [2150529] (in reverse order)
[2025-11-26 09:30:31] 2025-11-26 14:29:27,501 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:30:31] 2025-11-26 14:29:27,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:30:31] 2025-11-26 14:29:27,513 | INFO     | did not find any defunct processes belonging to 2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:27,528 | INFO     | did not find any defunct processes belonging to 2150529
[2025-11-26 09:30:31] 2025-11-26 14:29:27,530 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:30:31] 2025-11-26 14:29:27,530 | INFO     | ready for new job
[2025-11-26 09:30:31] 2025-11-26 14:29:27,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:30:31] 2025-11-26 14:29:27,535 | INFO     | ***************************************
[2025-11-26 09:30:31] 2025-11-26 14:29:27,535 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:30:31] 2025-11-26 14:29:27,535 | INFO     | ***************************************
[2025-11-26 09:30:31] 2025-11-26 14:29:27,535 | INFO     | 
[2025-11-26 09:30:31] 2025-11-26 14:29:27,538 | INFO     | architecture information:
[2025-11-26 09:30:31] 2025-11-26 14:29:27,539 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:30:31] 2025-11-26 14:29:27,554 | INFO     | cat /etc/os-release:
[2025-11-26 09:30:31] NAME="CentOS Linux"
[2025-11-26 09:30:31] VERSION="7 (Core)"
[2025-11-26 09:30:31] ID="centos"
[2025-11-26 09:30:31] ID_LIKE="rhel fedora"
[2025-11-26 09:30:31] VERSION_ID="7"
[2025-11-26 09:30:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:30:31] ANSI_COLOR="0;31"
[2025-11-26 09:30:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:30:31] HOME_URL="https://www.centos.org/"
[2025-11-26 09:30:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:30:31] 
[2025-11-26 09:30:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:30:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:30:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:30:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:30:31] 
[2025-11-26 09:30:31] 2025-11-26 14:29:27,554 | INFO     | ***************************************
[2025-11-26 09:30:31] 2025-11-26 14:29:28,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 09:30:31] 2025-11-26 14:29:28,077 | INFO     | sufficient remaining disk space (71240253440 B)
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | INFO     | update_server=False
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:30:31] 2025-11-26 14:29:28,078 | INFO     | aborting loop
[2025-11-26 09:30:31] 2025-11-26 14:29:28,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:30:31] 2025-11-26 14:29:28,153 | INFO     | all job control threads have been joined
[2025-11-26 09:30:31] 2025-11-26 14:29:28,466 | INFO     | all data control threads have been joined
[2025-11-26 09:30:31] 2025-11-26 14:29:28,986 | INFO     | all payload control threads have been joined
[2025-11-26 09:30:31] 2025-11-26 14:29:29,083 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,084 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,097 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,159 | INFO     | [job] control thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,472 | INFO     | [data] control thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,695 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,960 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,992 | INFO     | [payload] control thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:29,993 | INFO     | [job] validate thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:30,084 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:30,135 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:30,173 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:30,311 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:31,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:30:31] 2025-11-26 14:29:31,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:30:31] 2025-11-26 14:29:32,016 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:35,421 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:30:31] 2025-11-26 14:29:58,004 | INFO     | PID=2118942 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:30:31] 2025-11-26 14:29:58,004 | INFO     | .. there are 30 such processes running
[2025-11-26 09:30:31] 2025-11-26 14:29:58,005 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:30:31] 2025-11-26 14:29:58,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:30:31] 2025-11-26 14:29:58,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:30:31] 2025-11-26 14:30:24,100 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:30:31] 2025-11-26 14:30:26,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644142712640)>', '<ExcThread(monitor, started 139643672585984)>']
[2025-11-26 09:30:31] 2025-11-26 14:30:27,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:30:31] 2025-11-26 14:30:27,160 | INFO     | [monitor] control thread has ended
[2025-11-26 09:30:31] 2025-11-26 14:30:31,234 | INFO     | all workflow threads have been joined
[2025-11-26 09:30:31] 2025-11-26 14:30:31,236 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:30:31] 2025-11-26 14:30:31,236 | INFO     | traces error code: 0
[2025-11-26 09:30:31] 2025-11-26 14:30:31,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:30:31] 2025-11-26 14:30:31,451 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:30:31] 2025-11-26 14:30:31,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:30:31] 2025-11-26 14:30:31,455 [wrapper] pilotpid: 2118942
[2025-11-26 09:30:31] 2025-11-26 14:30:31,457 [wrapper] Pilot exit status: 0
[2025-11-26 09:30:31] 2025-11-26 14:30:31,467 [wrapper] pandaids: 6895401401 6895401401
[2025-11-26 09:30:31] 2025-11-26 14:30:31,528 [wrapper] cleanup supervisor_pilot 1347882 2118944
[2025-11-26 09:30:31] 2025-11-26 14:30:31,532 [wrapper] Test setup, not cleaning
[2025-11-26 09:30:31] 2025-11-26 14:30:31,535 [wrapper] apfmon messages muted
[2025-11-26 09:30:31] 2025-11-26 14:30:31,538 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:30:31] 2025-11-26 14:30:31,541 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:30:31]  *** Error codes and diagnostics ***
[2025-11-26 09:30:31]     "exeErrorCode": 0,
[2025-11-26 09:30:31]     "exeErrorDiag": "",
[2025-11-26 09:30:31]     "pilotErrorCode": 0,
[2025-11-26 09:30:31]     "pilotErrorDiag": "",
[2025-11-26 09:30:31]  *** Listing of results directory ***
[2025-11-26 09:30:31] total 1720844
[2025-11-26 09:30:31] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:55 pilot3.tar.gz
[2025-11-26 09:30:31] -rwx------. 1 boincer umatlas     36292 Nov 24 02:26 runpilot2-wrapper.sh
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 02:26 queuedata.json
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas       100 Nov 25 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:30:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 15:45 run_atlas
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas       105 Nov 25 15:45 job.xml
[2025-11-26 09:30:31] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 15:45 EVNT.47483658._001261.pool.root.1
[2025-11-26 09:30:31] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 15:45 ATLAS.root_0
[2025-11-26 09:30:31] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 15:45 input.tar.gz
[2025-11-26 09:30:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 15:45 shared
[2025-11-26 09:30:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:45 start_atlas.sh
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas         0 Nov 25 15:45 boinc_lockfile
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 16:00 pandaJob.out
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas        57 Nov 25 16:00 setup.sh.local
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas    991893 Nov 25 16:00 agis_schedconf.cvmfs.json
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas       533 Nov 26 09:17 boinc_task_state.xml
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas 913029076 Nov 26 09:28 HITS.47556149._002473.pool.root.1
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas      1069 Nov 26 09:29 memory_monitor_summary.json
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas   2270978 Nov 26 09:29 log.47556149._002473.job.log.tgz.1
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas      6846 Nov 26 09:29 init_data.xml
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas      8622 Nov 26 09:29 heartbeat.json
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas        95 Nov 26 09:29 pilot_heartbeat.json
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:30 wrapper_checkpoint.txt
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas      4824 Nov 26 09:30 pilotlog.txt
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:30 boinc_mmap_file
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas   8018735 Nov 26 09:30 log.47556149._002473.job.log.1
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas       353 Nov 26 09:30 output.list
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:30 runtime_log
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas  10311680 Nov 26 09:30 result.tar.gz
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 09:30 runtime_log.err
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas       786 Nov 26 09:30 cSmKDm28fh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOxIKDmBJkEXn.diag
[2025-11-26 09:30:31] -rw-r--r--. 1 boincer umatlas     23519 Nov 26 09:30 stderr.txt
[2025-11-26 09:30:31] HITS file was successfully produced:
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas 913029076 Nov 26 09:28 shared/HITS.pool.root.1
[2025-11-26 09:30:31]  *** Contents of shared directory: ***
[2025-11-26 09:30:31] total 1304948
[2025-11-26 09:30:31] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 15:45 ATLAS.root_0
[2025-11-26 09:30:31] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 15:45 input.tar.gz
[2025-11-26 09:30:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:45 start_atlas.sh
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas 913029076 Nov 26 09:28 HITS.pool.root.1
[2025-11-26 09:30:31] -rw-------. 1 boincer umatlas  10311680 Nov 26 09:30 result.tar.gz
09:30:33 (2100236): run_atlas exited; CPU time 238499.680986
09:30:33 (2100236): called boinc_finish(0)

</stderr_txt>
]]>

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