Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:17:55 (1677627): wrapper (7.7.26015): starting
00:17:55 (1677627): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:17:55] Arguments: --nthreads 8
[2025-11-25 00:17:55] Threads: 8
[2025-11-25 00:17:55] Checking for CVMFS
[2025-11-25 00:17:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:17:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:17:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:17:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:17:57] 2.13.2.0 11163 35434 287560 153271 0 406 36300256 40960001 12082 16776704 0 31550143 99.634 28063986 39770 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:17:57] CVMFS is ok
[2025-11-25 00:17:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:17:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:17:57] Further information can be found at the LHC@home message board.
[2025-11-25 00:17:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:17:57] Checking for apptainer binary...
[2025-11-25 00:17:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:17:57] Running /usr/bin/apptainer --version
[2025-11-25 00:17:57] apptainer version 1.4.4-1.el9
[2025-11-25 00:17:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:17:58] c-210-35-1.aglt2.org
[2025-11-25 00:17:58] apptainer works
[2025-11-25 00:17:58] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:17:58] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:17:58] Starting ATLAS job with PandaID=6891568720
[2025-11-25 00:17:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:28:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:28:23] 2025-11-27 02:27:10,368 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 21:28:23] 2025-11-27 02:27:10,383 | INFO     | executing command: lscpu
[2025-11-26 21:28:23] 2025-11-27 02:27:10,517 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 21:28:23] 2025-11-27 02:27:11,368 | INFO     | time since job start (162484s) is within the limit (172800.0s)
[2025-11-26 21:28:23] 2025-11-27 02:27:12,599 | INFO     | monitor loop #9448: job 0:6891568720 is in state 'finished'
[2025-11-26 21:28:23] 2025-11-27 02:27:12,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:28:23] 2025-11-27 02:27:13,375 | INFO     | time since job start (162486s) is within the limit (172800.0s)
[2025-11-26 21:28:23] 2025-11-27 02:27:15,103 | INFO     | monitor loop #9449: job 0:6891568720 is in state 'finished'
[2025-11-26 21:28:23] 2025-11-27 02:27:15,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:28:23] 2025-11-27 02:27:15,382 | INFO     | time since job start (162488s) is within the limit (172800.0s)
[2025-11-26 21:28:23] 2025-11-27 02:27:17,388 | INFO     | time since job start (162490s) is within the limit (172800.0s)
[2025-11-26 21:28:23] 2025-11-27 02:27:17,615 | INFO     | monitor loop #9450: job 0:6891568720 is in state 'finished'
[2025-11-26 21:28:23] 2025-11-27 02:27:17,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:28:23] 2025-11-27 02:27:17,687 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:28:23] 2025-11-27 02:27:17,696 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2626.247464285715
[2025-11-26 21:28:23] 2025-11-27 02:27:17,705 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891568720/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:28:23] 2025-11-27 02:27:17,706 | INFO     | extracted standard info from prmon json
[2025-11-26 21:28:23] 2025-11-27 02:27:17,706 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:28:23] 2025-11-27 02:27:17,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:28:23] 2025-11-27 02:27:17,744 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:28:23] 2025-11-27 02:27:17,747 | INFO     | sum of square deviations: 5849267724195.447
[2025-11-26 21:28:23] 2025-11-27 02:27:17,896 | INFO     | sum of deviations: 24025086779540.383
[2025-11-26 21:28:23] 2025-11-27 02:27:17,896 | INFO     | mean x: 1764129234.5277987
[2025-11-26 21:28:23] 2025-11-27 02:27:17,897 | INFO     | mean y: 2869468.4808414727
[2025-11-26 21:28:23] 2025-11-27 02:27:17,897 | INFO     | intersect: -7243055995.750537
[2025-11-26 21:28:23] 2025-11-27 02:27:17,899 | INFO     | chi2: 18.581787008539237
[2025-11-26 21:28:23] 2025-11-27 02:27:17,902 | INFO     | sum of square deviations: 5816374596565.935
[2025-11-26 21:28:23] 2025-11-27 02:27:18,052 | INFO     | sum of deviations: 24943576490317.96
[2025-11-26 21:28:23] 2025-11-27 02:27:18,052 | INFO     | mean x: 1764129082.039142
[2025-11-26 21:28:23] 2025-11-27 02:27:18,052 | INFO     | mean y: 2873726.4625517502
[2025-11-26 21:28:23] 2025-11-27 02:27:18,052 | INFO     | intersect: -7562610230.265082
[2025-11-26 21:28:23] 2025-11-27 02:27:18,055 | INFO     | chi2: 15.261358254511595
[2025-11-26 21:28:23] 2025-11-27 02:27:18,055 | INFO     | current chi2=15.261358254511595 (change=17.869264955527385 %)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,055 | INFO     | right removable region: 2656
[2025-11-26 21:28:23] 2025-11-27 02:27:18,058 | INFO     | sum of square deviations: 5816364808505.932
[2025-11-26 21:28:23] 2025-11-27 02:27:18,178 | INFO     | sum of deviations: 22957108602309.64
[2025-11-26 21:28:23] 2025-11-27 02:27:18,178 | INFO     | mean x: 1764129387.039142
[2025-11-26 21:28:23] 2025-11-27 02:27:18,178 | INFO     | mean y: 2874418.475348137
[2025-11-26 21:28:23] 2025-11-27 02:27:18,178 | INFO     | intersect: -6960119007.858016
[2025-11-26 21:28:23] 2025-11-27 02:27:18,181 | INFO     | chi2: 14.384320452134268
[2025-11-26 21:28:23] 2025-11-27 02:27:18,181 | INFO     | current chi2=14.384320452134268 (change=22.589143630136476 %)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,181 | INFO     | left removable region: 10
[2025-11-26 21:28:23] 2025-11-27 02:27:18,183 | INFO     | sum of square deviations: 5744424503964.842
[2025-11-26 21:28:23] 2025-11-27 02:27:18,301 | INFO     | sum of deviations: 23043095491377.293
[2025-11-26 21:28:23] 2025-11-27 02:27:18,301 | INFO     | mean x: 1764129356.563492
[2025-11-26 21:28:23] 2025-11-27 02:27:18,301 | INFO     | mean y: 2883434.9448223733
[2025-11-26 21:28:23] 2025-11-27 02:27:18,301 | INFO     | intersect: -7073717744.925663
[2025-11-26 21:28:23] 2025-11-27 02:27:18,304 | INFO     | chi2: 7.823856281881805
[2025-11-26 21:28:23] 2025-11-27 02:27:18,304 | INFO     | current memory leak: 4.01 B/s (using 2646 data points, chi2=7.82)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,306 | INFO     | could have reported an average CPU frequency of 2780 MHz (91 samples)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,306 | INFO     | ..............................
[2025-11-26 21:28:23] 2025-11-27 02:27:18,306 | INFO     | . Timing measurements:
[2025-11-26 21:28:23] 2025-11-27 02:27:18,306 | INFO     | . get job = 0 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,306 | INFO     | . initial setup = 5 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | . payload setup = 42 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | . stage-in = 0 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | . payload execution = 162380 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | . stage-out = 4 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | . log creation = 1 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,307 | INFO     | ..............................
[2025-11-26 21:28:23] 2025-11-27 02:27:18,388 | INFO     | 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,388 | INFO     | job summary report
[2025-11-26 21:28:23] 2025-11-27 02:27:18,388 | INFO     | --------------------------------------------------
[2025-11-26 21:28:23] 2025-11-27 02:27:18,388 | INFO     | PanDA job id: 6891568720
[2025-11-26 21:28:23] 2025-11-27 02:27:18,388 | INFO     | task id: 47493068
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | errors: (none)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | pilot state: finished 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | transexitcode: 0
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | exeerrorcode: 0
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | exeerrordiag: 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | exitcode: 0
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | exitmsg: OK
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | cpuconsumptiontime: 249501 s
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | nevents: 1000
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | neventsw: 0
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | pid: 1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | pgrp: 1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | corecount: 8
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | event service: False
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | sizes: {0: 2283471, 1: 2284156, 2: 2284355, 13: 2284355, 15: 2284673, 24: 2284701, 162426: 2383938, 162427: 2383937, 162432: 2392992, 162434: 2393048, 162445: 2393
[2025-11-26 21:28:23] 2025-11-27 02:27:18,389 | INFO     | --------------------------------------------------
[2025-11-26 21:28:23] 2025-11-27 02:27:18,390 | INFO     | 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:28:23] 2025-11-27 02:27:18,472 | INFO     | job 6891568720 has completed (purged errors)
[2025-11-26 21:28:23] 2025-11-27 02:27:18,472 | INFO     | overall cleanup function is called
[2025-11-26 21:28:23] 2025-11-27 02:27:18,676 | INFO     | PID=1689502 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 21:28:23] 2025-11-27 02:27:18,676 | INFO     | .. there are 9 such processes running
[2025-11-26 21:28:23] 2025-11-27 02:27:19,510 | INFO     | --- collectZombieJob: --- 10, [1712204]
[2025-11-26 21:28:23] 2025-11-27 02:27:19,510 | INFO     | zombie collector waiting for pid 1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:19,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:28:23] 2025-11-27 02:27:19,510 | INFO     | collected zombie processes
[2025-11-26 21:28:23] 2025-11-27 02:27:19,510 | INFO     | will attempt to kill all subprocesses of pid=1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:20,723 | INFO     | process IDs to be killed: [1712204] (in reverse order)
[2025-11-26 21:28:23] 2025-11-27 02:27:21,407 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:28:23] 2025-11-27 02:27:21,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:28:23] 2025-11-27 02:27:21,476 | INFO     | did not find any defunct processes belonging to 1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:21,522 | INFO     | did not find any defunct processes belonging to 1712204
[2025-11-26 21:28:23] 2025-11-27 02:27:21,553 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:28:23] 2025-11-27 02:27:21,553 | INFO     | ready for new job
[2025-11-26 21:28:23] 2025-11-27 02:27:21,553 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:28:23] 2025-11-27 02:27:21,614 | INFO     | ***************************************
[2025-11-26 21:28:23] 2025-11-27 02:27:21,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:28:23] 2025-11-27 02:27:21,614 | INFO     | ***************************************
[2025-11-26 21:28:23] 2025-11-27 02:27:21,614 | INFO     | 
[2025-11-26 21:28:23] 2025-11-27 02:27:21,644 | INFO     | architecture information:
[2025-11-26 21:28:23] 2025-11-27 02:27:21,663 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:28:23] 2025-11-27 02:27:21,778 | INFO     | cat /etc/os-release:
[2025-11-26 21:28:23] NAME="CentOS Linux"
[2025-11-26 21:28:23] VERSION="7 (Core)"
[2025-11-26 21:28:23] ID="centos"
[2025-11-26 21:28:23] ID_LIKE="rhel fedora"
[2025-11-26 21:28:23] VERSION_ID="7"
[2025-11-26 21:28:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:28:23] ANSI_COLOR="0;31"
[2025-11-26 21:28:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:28:23] HOME_URL="https://www.centos.org/"
[2025-11-26 21:28:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:28:23] 
[2025-11-26 21:28:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:28:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:28:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:28:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:28:23] 
[2025-11-26 21:28:23] 2025-11-27 02:27:21,778 | INFO     | ***************************************
[2025-11-26 21:28:23] 2025-11-27 02:27:22,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 21:28:23] 2025-11-27 02:27:22,301 | INFO     | sufficient remaining disk space (72114765824 B)
[2025-11-26 21:28:23] 2025-11-27 02:27:22,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:28:23] 2025-11-27 02:27:22,301 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:28:23] 2025-11-27 02:27:22,301 | INFO     | update_server=False
[2025-11-26 21:28:23] 2025-11-27 02:27:22,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:28:23] 2025-11-27 02:27:22,561 | INFO     | all job control threads have been joined
[2025-11-26 21:28:23] 2025-11-27 02:27:22,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:28:23] 2025-11-27 02:27:22,617 | INFO     | all data control threads have been joined
[2025-11-26 21:28:23] 2025-11-27 02:27:22,692 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:28:23] 2025-11-27 02:27:22,692 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:28:23] 2025-11-27 02:27:22,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:28:23] 2025-11-27 02:27:22,692 | INFO     | will abort loop
[2025-11-26 21:28:23] 2025-11-27 02:27:23,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:28:23] 2025-11-27 02:27:23,124 | INFO     | all payload control threads have been joined
[2025-11-26 21:28:23] 2025-11-27 02:27:23,307 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,416 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,432 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:28:23] 2025-11-27 02:27:23,567 | INFO     | [job] control thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,576 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,623 | INFO     | [data] control thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,698 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:23,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,129 | INFO     | [payload] control thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,455 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,471 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,542 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,574 | INFO     | [job] validate thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:24,839 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:25,038 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:26,581 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:28:23] 2025-11-27 02:27:51,071 | INFO     | PID=1689502 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:28:23] 2025-11-27 02:27:51,071 | INFO     | .. there are 9 such processes running
[2025-11-26 21:28:23] 2025-11-27 02:27:51,072 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:28:23] 2025-11-27 02:27:51,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:28:23] 2025-11-27 02:27:51,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:28:23] 2025-11-27 02:28:16,365 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:28:23] 2025-11-27 02:28:17,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675967268672)>', '<ExcThread(monitor, started 139675465402112)>']
[2025-11-26 21:28:23] 2025-11-27 02:28:18,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:28:23] 2025-11-27 02:28:18,239 | INFO     | [monitor] control thread has ended
[2025-11-26 21:28:23] 2025-11-27 02:28:22,676 | INFO     | all workflow threads have been joined
[2025-11-26 21:28:23] 2025-11-27 02:28:22,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:28:23] 2025-11-27 02:28:22,676 | INFO     | traces error code: 0
[2025-11-26 21:28:23] 2025-11-27 02:28:22,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:28:23] 2025-11-27 02:28:22,822 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:28:23] 2025-11-27 02:28:22,825 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:28:23] 2025-11-27 02:28:22,828 [wrapper] pilotpid: 1689502
[2025-11-26 21:28:23] 2025-11-27 02:28:22,832 [wrapper] Pilot exit status: 0
[2025-11-26 21:28:23] 2025-11-27 02:28:22,851 [wrapper] pandaids: 6891568720
[2025-11-26 21:28:23] 2025-11-27 02:28:22,914 [wrapper] cleanup supervisor_pilot 1663963 1689503
[2025-11-26 21:28:23] 2025-11-27 02:28:22,918 [wrapper] Test setup, not cleaning
[2025-11-26 21:28:23] 2025-11-27 02:28:22,922 [wrapper] apfmon messages muted
[2025-11-26 21:28:23] 2025-11-27 02:28:22,925 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:28:23] 2025-11-27 02:28:22,929 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:28:23]  *** Error codes and diagnostics ***
[2025-11-26 21:28:23]     "exeErrorCode": 0,
[2025-11-26 21:28:23]     "exeErrorDiag": "",
[2025-11-26 21:28:23]     "pilotErrorCode": 0,
[2025-11-26 21:28:23]     "pilotErrorDiag": "",
[2025-11-26 21:28:23]  *** Listing of results directory ***
[2025-11-26 21:28:23] total 1346912
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-26 21:28:23] -rwx------. 1 boincer umatlas     36292 Nov 18 10:34 runpilot2-wrapper.sh
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:35 queuedata.json
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:28:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:17 run_atlas
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:17 job.xml
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas 408801424 Nov 25 00:17 EVNT.47493065._000193.pool.root.1
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:17 input.tar.gz
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 00:17 start_atlas.sh
[2025-11-26 21:28:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:17 shared
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:17 boinc_lockfile
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas      2773 Nov 25 00:17 pandaJob.out
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas    991801 Nov 25 00:19 agis_schedconf.cvmfs.json
[2025-11-26 21:28:23] drwx------. 5 boincer umatlas      4096 Nov 25 00:19 pilot3
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:15 boinc_task_state.xml
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 21:21 init_data.xml
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas 919285281 Nov 26 21:26 HITS.47493068._001928.pool.root.1
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas      1060 Nov 26 21:26 memory_monitor_summary.json
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas   3347956 Nov 26 21:27 log.47493068._001928.job.log.tgz.1
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas      8624 Nov 26 21:27 heartbeat.json
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas        95 Nov 26 21:27 pilot_heartbeat.json
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:28 boinc_mmap_file
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:28 wrapper_checkpoint.txt
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas      5009 Nov 26 21:28 pilotlog.txt
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas  20269897 Nov 26 21:28 log.47493068._001928.job.log.1
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas       353 Nov 26 21:28 output.list
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:28 runtime_log
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas  23633920 Nov 26 21:28 result.tar.gz
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas      8715 Nov 26 21:28 runtime_log.err
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas       665 Nov 26 21:28 6GlMDmVucf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnXFKDm3sFVsm.diag
[2025-11-26 21:28:23] -rw-r--r--. 1 boincer umatlas     21904 Nov 26 21:28 stderr.txt
[2025-11-26 21:28:23] HITS file was successfully produced:
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas 919285281 Nov 26 21:26 shared/HITS.pool.root.1
[2025-11-26 21:28:23]  *** Contents of shared directory: ***
[2025-11-26 21:28:23] total 1320648
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas 408801424 Nov 25 00:17 ATLAS.root_0
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:17 input.tar.gz
[2025-11-26 21:28:23] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 00:17 start_atlas.sh
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas 919285281 Nov 26 21:26 HITS.pool.root.1
[2025-11-26 21:28:23] -rw-------. 1 boincer umatlas  23633920 Nov 26 21:28 result.tar.gz
21:28:45 (1677627): run_atlas exited; CPU time 251873.875806
21:28:45 (1677627): called boinc_finish(0)

</stderr_txt>
]]>

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