Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:22:13 (441749): wrapper (7.7.26015): starting
13:22:13 (441749): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:22:13] Arguments: --nthreads 8
[2025-11-25 13:22:13] Threads: 8
[2025-11-25 13:22:13] Checking for CVMFS
[2025-11-25 13:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:22:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:22:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:22:14] 2.13.3.0 11900 28964 385688 153293 0 90 20714693 32935937 35067 16776704 0 154042005 99.514 190661740 34097 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 13:22:14] CVMFS is ok
[2025-11-25 13:22:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:22:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:22:14] Further information can be found at the LHC@home message board.
[2025-11-25 13:22:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:22:14] Checking for apptainer binary...
[2025-11-25 13:22:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:22:14] Running /usr/bin/apptainer --version
[2025-11-25 13:22:15] apptainer version 1.4.4-1.el9
[2025-11-25 13:22:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:22:15] c6-12-27-1.aglt2.org
[2025-11-25 13:22:15] apptainer works
[2025-11-25 13:22:15] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:22:15] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:22:15] Starting ATLAS job with PandaID=6895386996
[2025-11-25 13:22:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:30:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:30:43] 2025-11-26 07:23:41,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:43] 2025-11-26 07:23:41,546 | INFO     | time since job start (46862s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:43,524 | INFO     | monitor loop #2853: job 0:6895386996 is in state 'finished'
[2025-11-26 02:30:43] 2025-11-26 07:23:43,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:43] 2025-11-26 07:23:43,555 | INFO     | time since job start (46864s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:45,590 | INFO     | time since job start (46866s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:46,037 | INFO     | monitor loop #2854: job 0:6895386996 is in state 'finished'
[2025-11-26 02:30:43] 2025-11-26 07:23:46,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:43] 2025-11-26 07:23:47,597 | INFO     | time since job start (46868s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:48,555 | INFO     | monitor loop #2855: job 0:6895386996 is in state 'finished'
[2025-11-26 02:30:43] 2025-11-26 07:23:48,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:43] 2025-11-26 07:23:49,607 | INFO     | time since job start (46870s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,060 | INFO     | monitor loop #2856: job 0:6895386996 is in state 'finished'
[2025-11-26 02:30:43] 2025-11-26 07:23:51,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,556 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 02:30:43] 2025-11-26 07:23:51,603 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2698.5641874999997
[2025-11-26 02:30:43] 2025-11-26 07:23:51,642 | INFO     | time since job start (46872s) is within the limit (172800.0s)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,651 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895386996/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,651 | INFO     | extracted standard info from prmon json
[2025-11-26 02:30:43] 2025-11-26 07:23:51,651 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:30:43] 2025-11-26 07:23:51,652 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:30:43] 2025-11-26 07:23:51,685 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:30:43] 2025-11-26 07:23:51,687 | INFO     | sum of square deviations: 139917925437.05612
[2025-11-26 02:30:43] 2025-11-26 07:23:51,744 | INFO     | sum of deviations: 478312282861.3595
[2025-11-26 02:30:43] 2025-11-26 07:23:51,748 | INFO     | mean x: 1764118372.071708
[2025-11-26 02:30:43] 2025-11-26 07:23:51,748 | INFO     | mean y: 2871389.993481095
[2025-11-26 02:30:43] 2025-11-26 07:23:51,749 | INFO     | intersect: -6027803258.35869
[2025-11-26 02:30:43] 2025-11-26 07:23:51,749 | INFO     | chi2: 14.259487678057786
[2025-11-26 02:30:43] 2025-11-26 07:23:51,750 | INFO     | sum of square deviations: 137199650355.93141
[2025-11-26 02:30:43] 2025-11-26 07:23:51,777 | INFO     | sum of deviations: 735101918492.6317
[2025-11-26 02:30:43] 2025-11-26 07:23:51,777 | INFO     | mean x: 1764118219.5774279
[2025-11-26 02:30:43] 2025-11-26 07:23:51,777 | INFO     | mean y: 2885791.9553805776
[2025-11-26 02:30:43] 2025-11-26 07:23:51,777 | INFO     | intersect: -9449082083.290077
[2025-11-26 02:30:43] 2025-11-26 07:23:51,778 | INFO     | chi2: 10.873046242800147
[2025-11-26 02:30:43] 2025-11-26 07:23:51,779 | INFO     | current chi2=10.873046242800147 (change=23.748689375906736 %)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,779 | INFO     | right removable region: 761
[2025-11-26 02:30:43] 2025-11-26 07:23:51,780 | INFO     | sum of square deviations: 137199195843.77614
[2025-11-26 02:30:43] 2025-11-26 07:23:51,820 | INFO     | sum of deviations: 272213393836.50412
[2025-11-26 02:30:43] 2025-11-26 07:23:51,820 | INFO     | mean x: 1764118524.5787401
[2025-11-26 02:30:43] 2025-11-26 07:23:51,820 | INFO     | mean y: 2882930.8582677166
[2025-11-26 02:30:43] 2025-11-26 07:23:51,820 | INFO     | intersect: -3497259236.536291
[2025-11-26 02:30:43] 2025-11-26 07:23:51,846 | INFO     | chi2: 12.09802755192927
[2025-11-26 02:30:43] 2025-11-26 07:23:51,847 | INFO     | current chi2=12.09802755192927 (change=15.158048977134902 %)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,847 | INFO     | left removable region: 10
[2025-11-26 02:30:43] 2025-11-26 07:23:51,848 | INFO     | sum of square deviations: 131343252780.54593
[2025-11-26 02:30:43] 2025-11-26 07:23:51,894 | INFO     | sum of deviations: 536504122154.52856
[2025-11-26 02:30:43] 2025-11-26 07:23:51,895 | INFO     | mean x: 1764118494.0852196
[2025-11-26 02:30:43] 2025-11-26 07:23:51,895 | INFO     | mean y: 2902684.0386151797
[2025-11-26 02:30:43] 2025-11-26 07:23:51,895 | INFO     | intersect: -7203077250.287675
[2025-11-26 02:30:43] 2025-11-26 07:23:51,896 | INFO     | chi2: 8.045730139085116
[2025-11-26 02:30:43] 2025-11-26 07:23:51,900 | INFO     | current memory leak: 4.08 B/s (using 751 data points, chi2=8.05)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,901 | INFO     | could have reported an average CPU frequency of 2660 MHz (29 samples)
[2025-11-26 02:30:43] 2025-11-26 07:23:51,901 | INFO     | ..............................
[2025-11-26 02:30:43] 2025-11-26 07:23:51,901 | INFO     | . Timing measurements:
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . get job = 0 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . initial setup = 3 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . payload setup = 10 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . stage-in = 0 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . payload execution = 46783 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . stage-out = 9 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | . log creation = 1 s
[2025-11-26 02:30:43] 2025-11-26 07:23:51,902 | INFO     | ..............................
[2025-11-26 02:30:43] 2025-11-26 07:23:52,104 | INFO     | 
[2025-11-26 02:30:43] 2025-11-26 07:23:52,104 | INFO     | job summary report
[2025-11-26 02:30:43] 2025-11-26 07:23:52,104 | INFO     | --------------------------------------------------
[2025-11-26 02:30:43] 2025-11-26 07:23:52,104 | INFO     | PanDA job id: 6895386996
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | task id: 47556149
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | errors: (none)
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | pilot state: finished 
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | transexitcode: 0
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | exeerrorcode: 0
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | exeerrordiag: 
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | exitcode: 0
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | exitmsg: OK
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | cpuconsumptiontime: 260417 s
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | nevents: 1000
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | neventsw: 0
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | pid: 454590
[2025-11-26 02:30:43] 2025-11-26 07:23:52,105 | INFO     | pgrp: 454590
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | corecount: 8
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | event service: False
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 13: 2284661, 23: 2284717, 46799: 2331377, 46800: 2331376, 46810: 2340426, 46811: 2340482, 46843: 2340728}
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | --------------------------------------------------
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | 
[2025-11-26 02:30:43] 2025-11-26 07:23:52,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 02:30:43] 2025-11-26 07:23:52,327 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | job 6895386996 has completed (purged errors)
[2025-11-26 02:30:43] 2025-11-26 07:23:52,329 | INFO     | overall cleanup function is called
[2025-11-26 02:30:43] 2025-11-26 07:23:53,354 | INFO     | --- collectZombieJob: --- 10, [454590]
[2025-11-26 02:30:43] 2025-11-26 07:23:53,354 | INFO     | zombie collector waiting for pid 454590
[2025-11-26 02:30:43] 2025-11-26 07:23:53,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:30:43] 2025-11-26 07:23:53,354 | INFO     | collected zombie processes
[2025-11-26 02:30:43] 2025-11-26 07:23:53,355 | INFO     | will attempt to kill all subprocesses of pid=454590
[2025-11-26 02:30:43] 2025-11-26 07:23:55,669 | INFO     | PID=446466 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:30:43] 2025-11-26 07:23:55,669 | INFO     | .. there are 53 such processes running
[2025-11-26 02:30:43] 2025-11-26 07:23:55,772 | INFO     | process IDs to be killed: [454590] (in reverse order)
[2025-11-26 02:30:43] 2025-11-26 07:23:56,221 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:30:43] 2025-11-26 07:23:56,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:30:43] 2025-11-26 07:23:56,252 | INFO     | did not find any defunct processes belonging to 454590
[2025-11-26 02:30:43] 2025-11-26 07:23:56,285 | INFO     | did not find any defunct processes belonging to 454590
[2025-11-26 02:30:43] 2025-11-26 07:23:56,290 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:30:43] 2025-11-26 07:23:56,290 | INFO     | ready for new job
[2025-11-26 02:30:43] 2025-11-26 07:23:56,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:30:43] 2025-11-26 07:23:56,295 | INFO     | ***************************************
[2025-11-26 02:30:43] 2025-11-26 07:23:56,295 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:30:43] 2025-11-26 07:23:56,295 | INFO     | ***************************************
[2025-11-26 02:30:43] 2025-11-26 07:23:56,295 | INFO     | 
[2025-11-26 02:30:43] 2025-11-26 07:23:56,321 | INFO     | architecture information:
[2025-11-26 02:30:43] 2025-11-26 07:23:56,325 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:30:43] 2025-11-26 07:23:56,381 | INFO     | cat /etc/os-release:
[2025-11-26 02:30:43] NAME="CentOS Linux"
[2025-11-26 02:30:43] VERSION="7 (Core)"
[2025-11-26 02:30:43] ID="centos"
[2025-11-26 02:30:43] ID_LIKE="rhel fedora"
[2025-11-26 02:30:43] VERSION_ID="7"
[2025-11-26 02:30:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:30:43] ANSI_COLOR="0;31"
[2025-11-26 02:30:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:30:43] HOME_URL="https://www.centos.org/"
[2025-11-26 02:30:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:30:43] 
[2025-11-26 02:30:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:30:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:30:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:30:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:30:43] 
[2025-11-26 02:30:43] 2025-11-26 07:23:56,382 | INFO     | ***************************************
[2025-11-26 02:30:43] 2025-11-26 07:23:56,886 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 02:30:43] 2025-11-26 07:23:56,949 | INFO     | sufficient remaining disk space (84426096640 B)
[2025-11-26 02:30:43] 2025-11-26 07:23:56,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:30:43] 2025-11-26 07:23:56,949 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:30:43] 2025-11-26 07:23:56,949 | INFO     | update_server=False
[2025-11-26 02:30:43] 2025-11-26 07:23:56,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:30:43] 2025-11-26 07:23:57,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:30:43] 2025-11-26 07:23:57,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:30:43] 2025-11-26 07:23:57,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:30:43] 2025-11-26 07:23:57,166 | INFO     | aborting loop
[2025-11-26 02:30:43] 2025-11-26 07:23:57,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:30:43] 2025-11-26 07:23:57,473 | INFO     | all payload control threads have been joined
[2025-11-26 02:30:43] 2025-11-26 07:23:57,807 | INFO     | all data control threads have been joined
[2025-11-26 02:30:43] 2025-11-26 07:23:57,875 | INFO     | all job control threads have been joined
[2025-11-26 02:30:43] 2025-11-26 07:23:57,955 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,146 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,172 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,179 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,180 | INFO     | [job] validate thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,182 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,267 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,268 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,479 | INFO     | [payload] control thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,813 | INFO     | [data] control thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:58,881 | INFO     | [job] control thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:59,044 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:23:59,232 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:24:01,102 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:30:43] 2025-11-26 07:24:01,434 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:30:43] 2025-11-26 07:24:02,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887945504576)>', '<ExcThread(monitor, started 139887109973760)>']
[2025-11-26 02:30:43] 2025-11-26 07:24:07,715 | INFO     | all workflow threads have been joined
[2025-11-26 02:30:43] 2025-11-26 07:24:07,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:30:43] 2025-11-26 07:24:07,716 | INFO     | traces error code: 0
[2025-11-26 02:30:43] 2025-11-26 07:24:07,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:30:43] 2025-11-26 07:24:29,918 | INFO     | PID=446466 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:30:43] 2025-11-26 07:24:29,918 | INFO     | .. there are 53 such processes running
[2025-11-26 02:30:43] 2025-11-26 07:24:29,919 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:30:43] 2025-11-26 07:24:29,919 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:30:43] 2025-11-26 07:24:29,919 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:30:43] 2025-11-26 07:24:29,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:30:43] 2025-11-26 07:24:29,919 | INFO     | [monitor] control thread has ended
[2025-11-26 02:30:43] 2025-11-26 07:24:31,757 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:30:43] 2025-11-26 07:24:31,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:30:43] 2025-11-26 07:24:31,802 [wrapper] pilotpid: 446466
[2025-11-26 02:30:43] 2025-11-26 07:24:31,817 [wrapper] Pilot exit status: 0
[2025-11-26 02:30:43] 2025-11-26 07:24:31,972 [wrapper] pandaids: 6895386996
[2025-11-26 02:30:43] 2025-11-26 07:24:32,209 [wrapper] cleanup supervisor_pilot 3996200 446467
[2025-11-26 02:30:43] 2025-11-26 07:24:32,214 [wrapper] Test setup, not cleaning
[2025-11-26 02:30:43] 2025-11-26 07:24:32,218 [wrapper] apfmon messages muted
[2025-11-26 02:30:43] 2025-11-26 07:24:32,224 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:30:43] 2025-11-26 07:24:32,230 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:30:43]  *** Error codes and diagnostics ***
[2025-11-26 02:30:43]     "exeErrorCode": 0,
[2025-11-26 02:30:43]     "exeErrorDiag": "",
[2025-11-26 02:30:43]     "pilotErrorCode": 0,
[2025-11-26 02:30:43]     "pilotErrorDiag": "",
[2025-11-26 02:30:43]  *** Listing of results directory ***
[2025-11-26 02:30:43] total 1315568
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 02:30:43] -rwx------. 1 boincer umatlas     36292 Nov 24 01:26 runpilot2-wrapper.sh
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:26 queuedata.json
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:30:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:22 run_atlas
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:22 job.xml
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas 409456063 Nov 25 13:22 EVNT.47483658._001258.pool.root.1
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:22 start_atlas.sh
[2025-11-26 02:30:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:22 shared
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 13:22 input.tar.gz
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:22 boinc_lockfile
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 13:22 pandaJob.out
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas        57 Nov 25 13:22 setup.sh.local
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas    991543 Nov 25 13:22 agis_schedconf.cvmfs.json
[2025-11-26 02:30:43] drwx------. 5 boincer umatlas      4096 Nov 25 13:22 pilot3
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 01:57 boinc_task_state.xml
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas 917895427 Nov 26 02:21 HITS.47556149._002447.pool.root.1
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 02:22 init_data.xml
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas      1058 Nov 26 02:23 memory_monitor_summary.json
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas   1965954 Nov 26 02:23 log.47556149._002447.job.log.tgz.1
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas      8626 Nov 26 02:23 heartbeat.json
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas        95 Nov 26 02:24 pilot_heartbeat.json
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas       822 Nov 26 02:24 pilotlog.txt
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas   5968918 Nov 26 02:24 log.47556149._002447.job.log.1
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas       353 Nov 26 02:24 output.list
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:24 runtime_log
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas   7956480 Nov 26 02:24 result.tar.gz
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 02:24 runtime_log.err
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas       662 Nov 26 02:24 beDMDmuCfh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJxIKDmt2tDSo.diag
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:30 boinc_mmap_file
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:30 wrapper_checkpoint.txt
[2025-11-26 02:30:43] -rw-r--r--. 1 boincer umatlas     21888 Nov 26 02:30 stderr.txt
[2025-11-26 02:30:43] HITS file was successfully produced:
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas 917895427 Nov 26 02:21 shared/HITS.pool.root.1
[2025-11-26 02:30:43]  *** Contents of shared directory: ***
[2025-11-26 02:30:43] total 1304620
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas 409456063 Nov 25 13:22 ATLAS.root_0
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:22 start_atlas.sh
[2025-11-26 02:30:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 13:22 input.tar.gz
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas 917895427 Nov 26 02:21 HITS.pool.root.1
[2025-11-26 02:30:43] -rw-------. 1 boincer umatlas   7956480 Nov 26 02:24 result.tar.gz
02:30:45 (441749): run_atlas exited; CPU time 262378.205175
02:30:45 (441749): called boinc_finish(0)

</stderr_txt>
]]>

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