Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:32:33 (3454355): wrapper (7.7.26015): starting
06:32:33 (3454355): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 06:32:33] Arguments: --nthreads 3
[2025-11-25 06:32:33] Threads: 3
[2025-11-25 06:32:33] Checking for CVMFS
[2025-11-25 06:32:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:32:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:32:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:32:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:32:33] 2.9.2.0 2683671 165 65572 153272 3 88 35121783 36864000 0 130560 0 2316358 99.999 10502 17890 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 06:32:33] CVMFS is ok
[2025-11-25 06:32:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:32:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:32:33] Further information can be found at the LHC@home message board.
[2025-11-25 06:32:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:32:33] Checking for apptainer binary...
[2025-11-25 06:32:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:32:33] Running /usr/bin/apptainer --version
[2025-11-25 06:32:33] apptainer version 1.4.1-1.1
[2025-11-25 06:32:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:32:33] thA335
[2025-11-25 06:32:33] apptainer works
[2025-11-25 06:32:33] Set ATHENA_PROC_NUMBER=3
[2025-11-25 06:32:33] Set ATHENA_CORE_NUMBER=3
[2025-11-25 06:32:33] Starting ATLAS job with PandaID=6894238026
[2025-11-25 06:32:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:36:52]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:36:52] VERSION_ID="7"
[2025-11-25 06:36:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:36:52] ANSI_COLOR="0;31"
[2025-11-25 06:36:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:36:52] HOME_URL="https://www.centos.org/"
[2025-11-25 06:36:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:36:52] 
[2025-11-25 06:36:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:36:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:36:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:36:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:36:52] 
[2025-11-25 06:36:52] 2025-11-25 05:36:03,435 | INFO     | ***************************************
[2025-11-25 06:36:52] 2025-11-25 05:36:03,938 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | INFO     | sufficient remaining disk space (826913325056 B)
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | INFO     | update_server=False
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:36:52] 2025-11-25 05:36:03,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:36:52] 2025-11-25 05:36:03,967 | INFO     | all job control threads have been joined
[2025-11-25 06:36:52] 2025-11-25 05:36:04,749 | INFO     | all data control threads have been joined
[2025-11-25 06:36:52] 2025-11-25 05:36:04,750 | INFO     | all payload control threads have been joined
[2025-11-25 06:36:52] 2025-11-25 05:36:04,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:36:52] 2025-11-25 05:36:04,830 | INFO     | aborting loop
[2025-11-25 06:36:52] 2025-11-25 05:36:04,958 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:04,959 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:04,973 | INFO     | [job] control thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,305 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,569 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,740 | INFO     | [job] validate thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,754 | INFO     | [data] control thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,756 | INFO     | [payload] control thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,820 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,836 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,866 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,901 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:05,958 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:06,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:06,482 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:07,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:36:52] 2025-11-25 05:36:34,817 | INFO     | PID=3458095 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:36:52] 2025-11-25 05:36:34,817 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:36:52] 2025-11-25 05:36:34,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:36:52] 2025-11-25 05:36:34,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:36:52] 2025-11-25 05:36:45,971 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:36:52] 2025-11-25 05:36:47,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200617793344)>', '<ExcThread(monitor, started 140199996675840)>']
[2025-11-25 06:36:52] 2025-11-25 05:36:47,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:36:52] 2025-11-25 05:36:47,887 | INFO     | [monitor] control thread has ended
[2025-11-25 06:36:52] 2025-11-25 05:36:52,588 | INFO     | all workflow threads have been joined
[2025-11-25 06:36:52] 2025-11-25 05:36:52,588 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:36:52] 2025-11-25 05:36:52,589 | INFO     | traces error code: 0
[2025-11-25 06:36:52] 2025-11-25 05:36:52,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:36:52] 2025-11-25 05:36:52,634 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:36:52] 2025-11-25 05:36:52,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:36:52] 2025-11-25 05:36:52,640 [wrapper] pilotpid: 3458095
[2025-11-25 06:36:52] 2025-11-25 05:36:52,643 [wrapper] Pilot exit status: 0
[2025-11-25 06:36:52] 2025-11-25 05:36:52,650 [wrapper] pandaids: 6894238026
[2025-11-25 06:36:52] 2025-11-25 05:36:52,667 [wrapper] cleanup supervisor_pilot 3458101 3458096
[2025-11-25 06:36:52] 2025-11-25 05:36:52,670 [wrapper] Test setup, not cleaning
[2025-11-25 06:36:52] 2025-11-25 05:36:52,673 [wrapper] apfmon messages muted
[2025-11-25 06:36:52] 2025-11-25 05:36:52,675 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:36:52] 2025-11-25 05:36:52,678 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:36:52]  *** Error codes and diagnostics ***
[2025-11-25 06:36:52]     "exeErrorCode": 65,
[2025-11-25 06:36:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:36:52]     "pilotErrorCode": 1305,
[2025-11-25 06:36:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:36:52]  *** Listing of results directory ***
[2025-11-25 06:36:52] total 403536
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      5112 Nov 21 01:12 queuedata.json
[2025-11-25 06:36:52] -rwx------ 1 boinc boinc     36292 Nov 21 01:13 runpilot2-wrapper.sh
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc       100 Nov 25 06:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:36:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 06:32 run_atlas
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc       105 Nov 25 06:32 job.xml
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc 409030485 Nov 25 06:32 EVNT.47493127._002040.pool.root.1
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc    590102 Nov 25 06:32 input.tar.gz
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:32 start_atlas.sh
[2025-11-25 06:36:52] drwxrwx--x 2 boinc boinc      4096 Nov 25 06:32 shared
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:32 boinc_setup_complete
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      6196 Nov 25 06:32 init_data.xml
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:32 boinc_lockfile
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      2782 Nov 25 06:32 pandaJob.out
[2025-11-25 06:36:52] -rw------- 1 boinc boinc    991801 Nov 25 06:32 agis_schedconf.cvmfs.json
[2025-11-25 06:36:52] -rw------- 1 boinc boinc   1516227 Nov 25 06:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:36:52] drwx------ 5 boinc boinc      4096 Nov 25 06:32 pilot3
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc       523 Nov 25 06:33 boinc_task_state.xml
[2025-11-25 06:36:52] -rw------- 1 boinc boinc       954 Nov 25 06:33 memory_monitor_summary.json
[2025-11-25 06:36:52] -rw------- 1 boinc boinc     54442 Nov 25 06:33 log.47533967._000111.job.log.tgz.1
[2025-11-25 06:36:52] -rw------- 1 boinc boinc        95 Nov 25 06:35 pilot_heartbeat.json
[2025-11-25 06:36:52] -rw------- 1 boinc boinc      8396 Nov 25 06:36 heartbeat.json
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc        23 Nov 25 06:36 wrapper_checkpoint.txt
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      8192 Nov 25 06:36 boinc_mmap_file
[2025-11-25 06:36:52] -rw------- 1 boinc boinc      4752 Nov 25 06:36 pilotlog.txt
[2025-11-25 06:36:52] -rw------- 1 boinc boinc     92472 Nov 25 06:36 log.47533967._000111.job.log.1
[2025-11-25 06:36:52] -rw------- 1 boinc boinc       186 Nov 25 06:36 output.list
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc       620 Nov 25 06:36 runtime_log
[2025-11-25 06:36:52] -rw------- 1 boinc boinc    163840 Nov 25 06:36 result.tar.gz
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      8744 Nov 25 06:36 runtime_log.err
[2025-11-25 06:36:52] -rw------- 1 boinc boinc       649 Nov 25 06:36 h5NKDmDxTg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRiIKDmMf19Bn.diag
[2025-11-25 06:36:52] -rw-r--r-- 1 boinc boinc      8921 Nov 25 06:36 stderr.txt
[2025-11-25 06:36:52] No HITS result produced
[2025-11-25 06:36:52]  *** Contents of shared directory: ***
[2025-11-25 06:36:52] total 400204
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc 409030485 Nov 25 06:32 ATLAS.root_0
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc    590102 Nov 25 06:32 input.tar.gz
[2025-11-25 06:36:52] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:32 start_atlas.sh
[2025-11-25 06:36:52] -rw------- 1 boinc boinc    163840 Nov 25 06:36 result.tar.gz
06:36:53 (3454355): run_atlas exited; CPU time 31.012047
06:36:53 (3454355): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN