Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:39 (258044): wrapper (7.7.26015): starting
00:15:39 (258044): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:15:39] Arguments: --nthreads 8
[2025-11-25 00:15:39] Threads: 8
[2025-11-25 00:15:39] Checking for CVMFS
[2025-11-25 00:15:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:15:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:15:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:15:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:15:41] 2.13.2.0 9514 33855 454188 153271 0 176 38578983 40960001 26862 16776704 0 89389636 99.573 95031547 35938 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:15:41] CVMFS is ok
[2025-11-25 00:15:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:15:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:15:41] Further information can be found at the LHC@home message board.
[2025-11-25 00:15:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:15:41] Checking for apptainer binary...
[2025-11-25 00:15:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:15:41] Running /usr/bin/apptainer --version
[2025-11-25 00:15:41] apptainer version 1.4.4-1.el9
[2025-11-25 00:15:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:15:42] c-211-33-3.aglt2.org
[2025-11-25 00:15:42] apptainer works
[2025-11-25 00:15:42] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:15:42] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:15:42] Starting ATLAS job with PandaID=6895387015
[2025-11-25 00:15:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:40:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:40:07] 2025-11-26 21:47:35,182 | INFO     | monitor loop #8437: job 0:6895387015 is in state 'finished'
[2025-11-26 20:40:07] 2025-11-26 21:47:35,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:40:07] 2025-11-26 21:47:35,259 | INFO     | time since job start (145829s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:37,266 | INFO     | time since job start (145831s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:37,687 | INFO     | monitor loop #8438: job 0:6895387015 is in state 'finished'
[2025-11-26 20:40:07] 2025-11-26 21:47:37,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:40:07] 2025-11-26 21:47:39,274 | INFO     | time since job start (145833s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:40,192 | INFO     | monitor loop #8439: job 0:6895387015 is in state 'finished'
[2025-11-26 20:40:07] 2025-11-26 21:47:40,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:40:07] 2025-11-26 21:47:41,280 | INFO     | time since job start (145835s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:42,697 | INFO     | monitor loop #8440: job 0:6895387015 is in state 'finished'
[2025-11-26 20:40:07] 2025-11-26 21:47:42,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:40:07] 2025-11-26 21:47:43,287 | INFO     | time since job start (145837s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:44,091 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:40:07] 2025-11-26 21:47:44,154 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2581.915354166666
[2025-11-26 20:40:07] 2025-11-26 21:47:44,220 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895387015/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:40:07] 2025-11-26 21:47:44,225 | INFO     | extracted standard info from prmon json
[2025-11-26 20:40:07] 2025-11-26 21:47:44,225 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:40:07] 2025-11-26 21:47:44,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:40:07] 2025-11-26 21:47:44,302 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:40:07] 2025-11-26 21:47:44,306 | INFO     | sum of square deviations: 4222370800084.905
[2025-11-26 20:40:07] 2025-11-26 21:47:45,242 | INFO     | sum of deviations: 12687999300506.82
[2025-11-26 20:40:07] 2025-11-26 21:47:45,243 | INFO     | mean x: 1764120775.5062814
[2025-11-26 20:40:07] 2025-11-26 21:47:45,244 | INFO     | mean y: 2836657.677554439
[2025-11-26 20:40:07] 2025-11-26 21:47:45,244 | INFO     | intersect: -5298252286.283303
[2025-11-26 20:40:07] 2025-11-26 21:47:45,248 | INFO     | chi2: 26.531879053162665
[2025-11-26 20:40:07] 2025-11-26 21:47:45,275 | INFO     | sum of square deviations: 4195904530569.6206
[2025-11-26 20:40:07] 2025-11-26 21:47:45,308 | INFO     | monitor loop #8441: job 0:6895387015 is in state 'finished'
[2025-11-26 20:40:07] 2025-11-26 21:47:45,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:40:07] 2025-11-26 21:47:45,335 | INFO     | time since job start (145839s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:45,790 | INFO     | sum of deviations: 13444890487767.088
[2025-11-26 20:40:07] 2025-11-26 21:47:45,797 | INFO     | mean x: 1764120623.0125892
[2025-11-26 20:40:07] 2025-11-26 21:47:45,797 | INFO     | mean y: 2841018.296684851
[2025-11-26 20:40:07] 2025-11-26 21:47:45,797 | INFO     | intersect: -5649911185.861732
[2025-11-26 20:40:07] 2025-11-26 21:47:45,800 | INFO     | chi2: 23.537374426433583
[2025-11-26 20:40:07] 2025-11-26 21:47:45,800 | INFO     | current chi2=23.537374426433583 (change=11.286440062269655 %)
[2025-11-26 20:40:07] 2025-11-26 21:47:45,800 | INFO     | right removable region: 2382
[2025-11-26 20:40:07] 2025-11-26 21:47:45,811 | INFO     | sum of square deviations: 4195900151379.6235
[2025-11-26 20:40:07] 2025-11-26 21:47:46,194 | INFO     | sum of deviations: 11707446234368.701
[2025-11-26 20:40:07] 2025-11-26 21:47:46,195 | INFO     | mean x: 1764120928.0125892
[2025-11-26 20:40:07] 2025-11-26 21:47:46,195 | INFO     | mean y: 2842306.677717163
[2025-11-26 20:40:07] 2025-11-26 21:47:46,195 | INFO     | intersect: -4919427092.1403475
[2025-11-26 20:40:07] 2025-11-26 21:47:46,206 | INFO     | chi2: 22.05285640060546
[2025-11-26 20:40:07] 2025-11-26 21:47:46,207 | INFO     | current chi2=22.05285640060546 (change=16.881663916763916 %)
[2025-11-26 20:40:07] 2025-11-26 21:47:46,207 | INFO     | left removable region: 10
[2025-11-26 20:40:07] 2025-11-26 21:47:46,210 | INFO     | sum of square deviations: 4138059806099.3286
[2025-11-26 20:40:07] 2025-11-26 21:47:46,744 | INFO     | sum of deviations: 11770323329986.238
[2025-11-26 20:40:07] 2025-11-26 21:47:46,744 | INFO     | mean x: 1764120897.5265598
[2025-11-26 20:40:07] 2025-11-26 21:47:46,744 | INFO     | mean y: 2852458.6547217537
[2025-11-26 20:40:07] 2025-11-26 21:47:46,744 | INFO     | intersect: -5015024113.952434
[2025-11-26 20:40:07] 2025-11-26 21:47:46,767 | INFO     | chi2: 15.24460585414186
[2025-11-26 20:40:07] 2025-11-26 21:47:46,768 | INFO     | current memory leak: 2.84 B/s (using 2372 data points, chi2=15.24)
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | could have reported an average CPU frequency of 2653 MHz (83 samples)
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | ..............................
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | . Timing measurements:
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | . get job = 0 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | . initial setup = 12 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | . payload setup = 50 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,791 | INFO     | . stage-in = 0 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,792 | INFO     | . payload execution = 145673 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,792 | INFO     | . stage-out = 15 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,792 | INFO     | . log creation = 6 s
[2025-11-26 20:40:07] 2025-11-26 21:47:46,792 | INFO     | ..............................
[2025-11-26 20:40:07] 2025-11-26 21:47:47,388 | INFO     | time since job start (145841s) is within the limit (172800.0s)
[2025-11-26 20:40:07] 2025-11-26 21:47:47,629 | INFO     | 
[2025-11-26 20:40:07] 2025-11-26 21:47:47,630 | INFO     | job summary report
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | --------------------------------------------------
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | PanDA job id: 6895387015
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | task id: 47556149
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | errors: (none)
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | pilot state: finished 
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | transexitcode: 0
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | exeerrorcode: 0
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | exeerrordiag: 
[2025-11-26 20:40:07] 2025-11-26 21:47:47,632 | INFO     | exitcode: 0
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | exitmsg: OK
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | cpuconsumptiontime: 274906 s
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | nevents: 1000
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | neventsw: 0
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | pid: 279331
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | pgrp: 279331
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | corecount: 8
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | event service: False
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | sizes: {0: 2284032, 1: 2284116, 2: 2284315, 13: 2284315, 23: 2284371, 34: 2284817, 145729: 2375368, 145747: 2384395, 145748: 2384451, 145778: 2384697}
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | --------------------------------------------------
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | 
[2025-11-26 20:40:07] 2025-11-26 21:47:47,633 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:40:07] 2025-11-26 21:47:47,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | job 6895387015 has completed (purged errors)
[2025-11-26 20:40:07] 2025-11-26 21:47:47,721 | INFO     | overall cleanup function is called
[2025-11-26 20:40:07] 2025-11-26 21:47:48,739 | INFO     | --- collectZombieJob: --- 10, [279331]
[2025-11-26 20:40:07] 2025-11-26 21:47:48,740 | INFO     | zombie collector waiting for pid 279331
[2025-11-26 20:40:07] 2025-11-26 21:47:48,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:40:07] 2025-11-26 21:47:48,740 | INFO     | collected zombie processes
[2025-11-26 20:40:07] 2025-11-26 21:47:48,740 | INFO     | will attempt to kill all subprocesses of pid=279331
[2025-11-26 20:40:07] 2025-11-26 21:47:50,672 | INFO     | process IDs to be killed: [279331] (in reverse order)
[2025-11-26 20:40:07] 2025-11-26 21:47:51,011 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:40:07] 2025-11-26 21:47:51,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:40:07] 2025-11-26 21:47:51,045 | INFO     | did not find any defunct processes belonging to 279331
[2025-11-26 20:40:07] 2025-11-26 21:47:51,082 | INFO     | did not find any defunct processes belonging to 279331
[2025-11-26 20:40:07] 2025-11-26 21:47:51,084 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:40:07] 2025-11-26 21:47:51,085 | INFO     | ready for new job
[2025-11-26 20:40:07] 2025-11-26 21:47:51,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:40:07] 2025-11-26 21:47:51,192 | INFO     | ***************************************
[2025-11-26 20:40:07] 2025-11-26 21:47:51,192 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:40:07] 2025-11-26 21:47:51,192 | INFO     | ***************************************
[2025-11-26 20:40:07] 2025-11-26 21:47:51,192 | INFO     | 
[2025-11-26 20:40:07] 2025-11-26 21:47:51,199 | INFO     | architecture information:
[2025-11-26 20:40:07] 2025-11-26 21:47:51,217 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:40:07] 2025-11-26 21:47:51,389 | INFO     | cat /etc/os-release:
[2025-11-26 20:40:07] NAME="CentOS Linux"
[2025-11-26 20:40:07] VERSION="7 (Core)"
[2025-11-26 20:40:07] ID="centos"
[2025-11-26 20:40:07] ID_LIKE="rhel fedora"
[2025-11-26 20:40:07] VERSION_ID="7"
[2025-11-26 20:40:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:40:07] ANSI_COLOR="0;31"
[2025-11-26 20:40:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:40:07] HOME_URL="https://www.centos.org/"
[2025-11-26 20:40:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:40:07] 
[2025-11-26 20:40:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:40:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:40:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:40:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:40:07] 
[2025-11-26 20:40:07] 2025-11-26 21:47:51,389 | INFO     | ***************************************
[2025-11-26 20:40:07] 2025-11-26 21:47:51,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:40:07] 2025-11-26 21:47:51,955 | INFO     | sufficient remaining disk space (114085068800 B)
[2025-11-26 20:40:07] 2025-11-26 21:47:51,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:40:07] 2025-11-26 21:47:51,956 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:40:07] 2025-11-26 21:47:51,956 | INFO     | update_server=False
[2025-11-26 20:40:07] 2025-11-26 21:47:51,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:40:07] 2025-11-26 21:47:51,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:40:07] 2025-11-26 21:47:51,957 | INFO     | aborting loop
[2025-11-26 20:40:07] 2025-11-26 21:47:52,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:40:07] 2025-11-26 21:47:52,424 | INFO     | all job control threads have been joined
[2025-11-26 20:40:07] 2025-11-26 21:47:52,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:40:07] 2025-11-26 21:47:52,962 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:52,963 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,010 | INFO     | all data control threads have been joined
[2025-11-26 20:40:07] 2025-11-26 21:47:53,052 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,080 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,122 | INFO     | all payload control threads have been joined
[2025-11-26 20:40:07] 2025-11-26 21:47:53,268 | INFO     | [job] validate thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,281 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,430 | INFO     | [job] control thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,500 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,646 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:53,755 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,016 | INFO     | [data] control thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,052 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,138 | INFO     | [payload] control thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,286 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:47:54,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:40:07] 2025-11-26 21:47:58,362 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:40:07] 2025-11-26 21:48:21,097 | INFO     | PID=263255 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:40:07] 2025-11-26 21:48:21,097 | INFO     | .. there are 29 such processes running
[2025-11-26 20:40:07] 2025-11-26 21:48:21,097 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:40:07] 2025-11-26 21:48:21,097 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:40:07] 2025-11-26 21:48:21,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:40:07] 2025-11-26 21:48:28,109 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:40:07] 2025-11-26 21:48:28,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530946357056)>', '<ExcThread(monitor, started 140530298111744)>']
[2025-11-26 20:40:07] 2025-11-26 21:48:29,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:40:07] 2025-11-26 21:48:29,149 | INFO     | [monitor] control thread has ended
[2025-11-26 20:40:07] 2025-11-26 21:48:33,981 | INFO     | all workflow threads have been joined
[2025-11-26 20:40:07] 2025-11-26 21:48:33,981 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:40:07] 2025-11-26 21:48:33,981 | INFO     | traces error code: 0
[2025-11-26 20:40:07] 2025-11-26 21:48:33,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:40:07] 2025-11-26 21:48:35,465 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:40:07] 2025-11-26 21:48:35,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:40:07] 2025-11-26 21:48:35,552 [wrapper] pilotpid: 263255
[2025-11-26 20:40:07] 2025-11-26 21:48:35,580 [wrapper] Pilot exit status: 0
[2025-11-26 20:40:07] 2025-11-26 21:48:35,656 [wrapper] pandaids: 6895387015
[2025-11-26 20:40:07] 2025-11-26 21:48:35,946 [wrapper] cleanup supervisor_pilot 3262568 263256
[2025-11-26 20:40:07] 2025-11-26 21:48:35,976 [wrapper] Test setup, not cleaning
[2025-11-26 20:40:07] 2025-11-26 21:48:35,991 [wrapper] apfmon messages muted
[2025-11-26 20:40:07] 2025-11-26 21:48:36,029 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:40:07] 2025-11-26 21:48:36,058 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:40:07]  *** Error codes and diagnostics ***
[2025-11-26 20:40:07]     "exeErrorCode": 0,
[2025-11-26 20:40:07]     "exeErrorDiag": "",
[2025-11-26 20:40:07]     "pilotErrorCode": 0,
[2025-11-26 20:40:07]     "pilotErrorDiag": "",
[2025-11-26 20:40:07]  *** Listing of results directory ***
[2025-11-26 20:40:07] total 1342644
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:30 queuedata.json
[2025-11-26 20:40:07] -rwx------. 1 boincer umatlas     36292 Nov 24 01:31 runpilot2-wrapper.sh
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:40:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:15 run_atlas
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:15 job.xml
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas 408840236 Nov 25 00:15 EVNT.47483658._001260.pool.root.1
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:15 start_atlas.sh
[2025-11-26 20:40:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:15 shared
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:15 input.tar.gz
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:15 boinc_lockfile
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:15 pandaJob.out
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas        57 Nov 25 00:15 setup.sh.local
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas    991801 Nov 25 00:16 agis_schedconf.cvmfs.json
[2025-11-26 20:40:07] drwx------. 5 boincer umatlas      4096 Nov 25 00:17 pilot3
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas       533 Nov 26 15:56 boinc_task_state.xml
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas 919689832 Nov 26 16:45 HITS.47556149._002466.pool.root.1
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas      1073 Nov 26 16:46 memory_monitor_summary.json
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas   3149156 Nov 26 16:47 log.47556149._002466.job.log.tgz.1
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas        95 Nov 26 16:47 pilot_heartbeat.json
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas      8658 Nov 26 16:47 heartbeat.json
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas      4824 Nov 26 16:48 pilotlog.txt
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas  18057224 Nov 26 16:48 log.47556149._002466.job.log.1
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas       353 Nov 26 16:48 output.list
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:48 runtime_log
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas  21227520 Nov 26 16:48 result.tar.gz
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 16:48 runtime_log.err
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas       669 Nov 26 16:48 fDYKDm0Hfh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8VLKDmEpgwHn.diag
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 20:39 init_data.xml
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:39 wrapper_checkpoint.txt
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:40 boinc_mmap_file
[2025-11-26 20:40:07] -rw-r--r--. 1 boincer umatlas     21807 Nov 26 20:40 stderr.txt
[2025-11-26 20:40:07] HITS file was successfully produced:
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas 919689832 Nov 26 16:45 shared/HITS.pool.root.1
[2025-11-26 20:40:07]  *** Contents of shared directory: ***
[2025-11-26 20:40:07] total 1318732
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas 408840236 Nov 25 00:15 ATLAS.root_0
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:15 start_atlas.sh
[2025-11-26 20:40:07] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:15 input.tar.gz
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas 919689832 Nov 26 16:45 HITS.pool.root.1
[2025-11-26 20:40:07] -rw-------. 1 boincer umatlas  21227520 Nov 26 16:48 result.tar.gz
20:40:08 (258044): run_atlas exited; CPU time 279488.236481
20:40:08 (258044): called boinc_finish(0)

</stderr_txt>
]]>

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