Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:40 (839418): wrapper (7.7.26015): starting
00:13:40 (839418): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:13:40] Arguments: --nthreads 9
[2025-11-25 00:13:40] Threads: 9
[2025-11-25 00:13:40] Checking for CVMFS
[2025-11-25 00:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:13:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:13:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:13:42] 2.13.2.0 8790 33964 256464 153271 2 62 30547420 40960001 12757 16776704 0 32011381 99.673 24559742 36621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:13:42] CVMFS is ok
[2025-11-25 00:13:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:13:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:13:42] Further information can be found at the LHC@home message board.
[2025-11-25 00:13:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:13:42] Checking for apptainer binary...
[2025-11-25 00:13:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:13:42] Running /usr/bin/apptainer --version
[2025-11-25 00:13:42] apptainer version 1.4.4-1.el9
[2025-11-25 00:13:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:13:42] c-210-33-1.aglt2.org
[2025-11-25 00:13:42] apptainer works
[2025-11-25 00:13:43] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:13:43] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:13:43] Starting ATLAS job with PandaID=6895369462
[2025-11-25 00:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:13:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:13:20] 2025-11-26 14:12:22,774 | INFO     | time since job start (118659s) is within the limit (172800.0s)
[2025-11-26 09:13:20] 2025-11-26 14:12:23,233 | INFO     | monitor loop #7477: job 0:6895369462 is in state 'finished'
[2025-11-26 09:13:20] 2025-11-26 14:12:23,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:13:20] 2025-11-26 14:12:24,784 | INFO     | time since job start (118661s) is within the limit (172800.0s)
[2025-11-26 09:13:20] 2025-11-26 14:12:25,738 | INFO     | monitor loop #7478: job 0:6895369462 is in state 'finished'
[2025-11-26 09:13:20] 2025-11-26 14:12:25,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:13:20] 2025-11-26 14:12:26,792 | INFO     | time since job start (118663s) is within the limit (172800.0s)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,017 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:13:20] 2025-11-26 14:12:27,024 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2910.3899821428563
[2025-11-26 09:13:20] 2025-11-26 14:12:27,032 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895369462/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,033 | INFO     | extracted standard info from prmon json
[2025-11-26 09:13:20] 2025-11-26 14:12:27,034 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:13:20] 2025-11-26 14:12:27,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:13:20] 2025-11-26 14:12:27,061 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:13:20] 2025-11-26 14:12:27,063 | INFO     | sum of square deviations: 2274012884415.971
[2025-11-26 09:13:20] 2025-11-26 14:12:27,123 | INFO     | sum of deviations: 13283873485368.268
[2025-11-26 09:13:20] 2025-11-26 14:12:27,124 | INFO     | mean x: 1764107045.1682963
[2025-11-26 09:13:20] 2025-11-26 14:12:27,124 | INFO     | mean y: 3028585.0694801854
[2025-11-26 09:13:20] 2025-11-26 14:12:27,124 | INFO     | intersect: -10302178990.164215
[2025-11-26 09:13:20] 2025-11-26 14:12:27,126 | INFO     | chi2: 12.371030609701249
[2025-11-26 09:13:20] 2025-11-26 14:12:27,128 | INFO     | sum of square deviations: 2256502062422.7373
[2025-11-26 09:13:20] 2025-11-26 14:12:27,186 | INFO     | sum of deviations: 13904991984171.895
[2025-11-26 09:13:20] 2025-11-26 14:12:27,187 | INFO     | mean x: 1764106892.6842105
[2025-11-26 09:13:20] 2025-11-26 14:12:27,187 | INFO     | mean y: 3033993.091331269
[2025-11-26 09:13:20] 2025-11-26 14:12:27,187 | INFO     | intersect: -10867725936.8417
[2025-11-26 09:13:20] 2025-11-26 14:12:27,189 | INFO     | chi2: 9.606254312589819
[2025-11-26 09:13:20] 2025-11-26 14:12:27,189 | INFO     | current chi2=9.606254312589819 (change=22.348795216328362 %)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,189 | INFO     | right removable region: 1937
[2025-11-26 09:13:20] 2025-11-26 14:12:27,192 | INFO     | sum of square deviations: 2256494751572.739
[2025-11-26 09:13:20] 2025-11-26 14:12:27,278 | INFO     | sum of deviations: 12496765355314.309
[2025-11-26 09:13:20] 2025-11-26 14:12:27,278 | INFO     | mean x: 1764107197.6842105
[2025-11-26 09:13:20] 2025-11-26 14:12:27,278 | INFO     | mean y: 3035436.7162022702
[2025-11-26 09:13:20] 2025-11-26 14:12:27,279 | INFO     | intersect: -9766822745.189703
[2025-11-26 09:13:20] 2025-11-26 14:12:27,281 | INFO     | chi2: 8.603665911543427
[2025-11-26 09:13:20] 2025-11-26 14:12:27,282 | INFO     | current chi2=8.603665911543427 (change=30.45311920256255 %)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,284 | INFO     | sum of square deviations: 2239066759953.5215
[2025-11-26 09:13:20] 2025-11-26 14:12:27,362 | INFO     | sum of deviations: 11913623534483.557
[2025-11-26 09:13:20] 2025-11-26 14:12:27,362 | INFO     | mean x: 1764107350.200207
[2025-11-26 09:13:20] 2025-11-26 14:12:27,362 | INFO     | mean y: 3040538.600620797
[2025-11-26 09:13:20] 2025-11-26 14:12:27,363 | INFO     | intersect: -9383419579.782309
[2025-11-26 09:13:20] 2025-11-26 14:12:27,365 | INFO     | chi2: 6.689198486207349
[2025-11-26 09:13:20] 2025-11-26 14:12:27,365 | INFO     | current chi2=6.689198486207349 (change=22.251763899472916 %)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,365 | INFO     | left removable region: 20
[2025-11-26 09:13:20] 2025-11-26 14:12:27,367 | INFO     | sum of square deviations: 2183913585147.1606
[2025-11-26 09:13:20] 2025-11-26 14:12:27,433 | INFO     | sum of deviations: 12064408296026.867
[2025-11-26 09:13:20] 2025-11-26 14:12:27,434 | INFO     | mean x: 1764107472.231612
[2025-11-26 09:13:20] 2025-11-26 14:12:27,434 | INFO     | mean y: 3051510.1533646323
[2025-11-26 09:13:20] 2025-11-26 14:12:27,434 | INFO     | intersect: -9742257538.620157
[2025-11-26 09:13:20] 2025-11-26 14:12:27,436 | INFO     | chi2: 2.9868471656271
[2025-11-26 09:13:20] 2025-11-26 14:12:27,436 | INFO     | current memory leak: 5.52 B/s (using 1917 data points, chi2=2.99)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | could have reported an average CPU frequency of 2861 MHz (68 samples)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | ..............................
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . Timing measurements:
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . get job = 0 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . initial setup = 4 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . payload setup = 35 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . stage-in = 0 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . payload execution = 118549 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . stage-out = 3 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,438 | INFO     | . log creation = 1 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,439 | INFO     | ..............................
[2025-11-26 09:13:20] 2025-11-26 14:12:27,531 | INFO     | 
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | job summary report
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | --------------------------------------------------
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | PanDA job id: 6895369462
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | task id: 47556137
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | errors: (none)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | pilot state: finished 
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | transexitcode: 0
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | exeerrorcode: 0
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | exeerrordiag: 
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | exitcode: 0
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | exitmsg: OK
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | cpuconsumptiontime: 249233 s
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | nevents: 1000
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | neventsw: 0
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | pid: 860734
[2025-11-26 09:13:20] 2025-11-26 14:12:27,532 | INFO     | pgrp: 860734
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | corecount: 9
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | event service: False
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | sizes: {0: 2284082, 1: 2284166, 2: 2284337, 12: 2284365, 24: 2284393, 29: 2284683, 34: 2284839, 118589: 2365625, 118592: 2374624, 118594: 2374680, 118603: 2374926}
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | --------------------------------------------------
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | 
[2025-11-26 09:13:20] 2025-11-26 14:12:27,533 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 09:13:20] 2025-11-26 14:12:27,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,567 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:13:20] 2025-11-26 14:12:27,568 | INFO     | job 6895369462 has completed (purged errors)
[2025-11-26 09:13:20] 2025-11-26 14:12:27,569 | INFO     | overall cleanup function is called
[2025-11-26 09:13:20] 2025-11-26 14:12:28,126 | INFO     | PID=846260 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:13:20] 2025-11-26 14:12:28,127 | INFO     | .. there are 12 such processes running
[2025-11-26 09:13:20] 2025-11-26 14:12:28,585 | INFO     | --- collectZombieJob: --- 10, [860734]
[2025-11-26 09:13:20] 2025-11-26 14:12:28,585 | INFO     | zombie collector waiting for pid 860734
[2025-11-26 09:13:20] 2025-11-26 14:12:28,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:13:20] 2025-11-26 14:12:28,585 | INFO     | collected zombie processes
[2025-11-26 09:13:20] 2025-11-26 14:12:28,585 | INFO     | will attempt to kill all subprocesses of pid=860734
[2025-11-26 09:13:20] 2025-11-26 14:12:28,889 | INFO     | process IDs to be killed: [860734] (in reverse order)
[2025-11-26 09:13:20] 2025-11-26 14:12:28,993 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:13:20] 2025-11-26 14:12:28,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:13:20] 2025-11-26 14:12:29,002 | INFO     | did not find any defunct processes belonging to 860734
[2025-11-26 09:13:20] 2025-11-26 14:12:29,010 | INFO     | did not find any defunct processes belonging to 860734
[2025-11-26 09:13:20] 2025-11-26 14:12:29,012 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:13:20] 2025-11-26 14:12:29,012 | INFO     | ready for new job
[2025-11-26 09:13:20] 2025-11-26 14:12:29,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:13:20] 2025-11-26 14:12:29,019 | INFO     | ***************************************
[2025-11-26 09:13:20] 2025-11-26 14:12:29,019 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:13:20] 2025-11-26 14:12:29,019 | INFO     | ***************************************
[2025-11-26 09:13:20] 2025-11-26 14:12:29,019 | INFO     | 
[2025-11-26 09:13:20] 2025-11-26 14:12:29,022 | INFO     | architecture information:
[2025-11-26 09:13:20] 2025-11-26 14:12:29,029 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:13:20] 2025-11-26 14:12:29,068 | INFO     | cat /etc/os-release:
[2025-11-26 09:13:20] NAME="CentOS Linux"
[2025-11-26 09:13:20] VERSION="7 (Core)"
[2025-11-26 09:13:20] ID="centos"
[2025-11-26 09:13:20] ID_LIKE="rhel fedora"
[2025-11-26 09:13:20] VERSION_ID="7"
[2025-11-26 09:13:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:13:20] ANSI_COLOR="0;31"
[2025-11-26 09:13:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:13:20] HOME_URL="https://www.centos.org/"
[2025-11-26 09:13:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:13:20] 
[2025-11-26 09:13:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:13:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:13:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:13:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:13:20] 
[2025-11-26 09:13:20] 2025-11-26 14:12:29,068 | INFO     | ***************************************
[2025-11-26 09:13:20] 2025-11-26 14:12:29,571 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 09:13:20] 2025-11-26 14:12:29,605 | INFO     | sufficient remaining disk space (69897027584 B)
[2025-11-26 09:13:20] 2025-11-26 14:12:29,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | INFO     | update_server=False
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | INFO     | aborting loop
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:13:20] 2025-11-26 14:12:29,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:13:20] 2025-11-26 14:12:30,574 | INFO     | all data control threads have been joined
[2025-11-26 09:13:20] 2025-11-26 14:12:30,596 | INFO     | all payload control threads have been joined
[2025-11-26 09:13:20] 2025-11-26 14:12:30,611 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:30,619 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:30,676 | INFO     | all job control threads have been joined
[2025-11-26 09:13:20] 2025-11-26 14:12:30,762 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,112 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,115 | INFO     | [job] validate thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,424 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,579 | INFO     | [data] control thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,602 | INFO     | [payload] control thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,612 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,614 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,682 | INFO     | [job] control thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,759 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:31,763 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:32,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:13:20] 2025-11-26 14:12:33,551 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:33,615 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:12:39,848 | INFO     | job.realtimelogging is not enabled
[2025-11-26 09:13:20] 2025-11-26 14:12:40,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:13:20] 2025-11-26 14:13:00,583 | INFO     | PID=846260 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 09:13:20] 2025-11-26 14:13:00,584 | INFO     | .. there are 12 such processes running
[2025-11-26 09:13:20] 2025-11-26 14:13:00,585 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:13:20] 2025-11-26 14:13:00,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:13:20] 2025-11-26 14:13:00,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:13:20] 2025-11-26 14:13:14,303 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:13:20] 2025-11-26 14:13:15,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077921896256)>', '<ExcThread(monitor, started 140077556537088)>']
[2025-11-26 09:13:20] 2025-11-26 14:13:15,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:13:20] 2025-11-26 14:13:15,668 | INFO     | [monitor] control thread has ended
[2025-11-26 09:13:20] 2025-11-26 14:13:20,378 | INFO     | all workflow threads have been joined
[2025-11-26 09:13:20] 2025-11-26 14:13:20,378 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:13:20] 2025-11-26 14:13:20,379 | INFO     | traces error code: 0
[2025-11-26 09:13:20] 2025-11-26 14:13:20,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:13:20] 2025-11-26 14:13:20,519 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:13:20] 2025-11-26 14:13:20,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:13:20] 2025-11-26 14:13:20,526 [wrapper] pilotpid: 846260
[2025-11-26 09:13:20] 2025-11-26 14:13:20,528 [wrapper] Pilot exit status: 0
[2025-11-26 09:13:20] 2025-11-26 14:13:20,541 [wrapper] pandaids: 6895369462
[2025-11-26 09:13:20] 2025-11-26 14:13:20,598 [wrapper] cleanup supervisor_pilot 3835062 846261
[2025-11-26 09:13:20] 2025-11-26 14:13:20,614 [wrapper] Test setup, not cleaning
[2025-11-26 09:13:20] 2025-11-26 14:13:20,627 [wrapper] apfmon messages muted
[2025-11-26 09:13:20] 2025-11-26 14:13:20,633 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:13:20] 2025-11-26 14:13:20,635 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:13:20]  *** Error codes and diagnostics ***
[2025-11-26 09:13:20]     "exeErrorCode": 0,
[2025-11-26 09:13:20]     "exeErrorDiag": "",
[2025-11-26 09:13:20]     "pilotErrorCode": 0,
[2025-11-26 09:13:20]     "pilotErrorDiag": "",
[2025-11-26 09:13:20]  *** Listing of results directory ***
[2025-11-26 09:13:20] total 1343440
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 15:21 queuedata.json
[2025-11-26 09:13:20] -rwx------. 1 boincer umatlas     36292 Nov 23 15:22 runpilot2-wrapper.sh
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:13:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:13 run_atlas
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:13 job.xml
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas 410577433 Nov 25 00:13 EVNT.47483658._000887.pool.root.1
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-26 09:13:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:13 shared
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:13 input.tar.gz
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:13 boinc_lockfile
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:13 pandaJob.out
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas        57 Nov 25 00:13 setup.sh.local
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas    991801 Nov 25 00:14 agis_schedconf.cvmfs.json
[2025-11-26 09:13:20] drwx------. 5 boincer umatlas      4096 Nov 25 00:14 pilot3
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:43 boinc_task_state.xml
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 09:03 init_data.xml
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas 924445349 Nov 26 09:11 HITS.47556137._008740.pool.root.1
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas      1059 Nov 26 09:12 memory_monitor_summary.json
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas   2973881 Nov 26 09:12 log.47556137._008740.job.log.tgz.1
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas      8622 Nov 26 09:12 heartbeat.json
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas        95 Nov 26 09:13 pilot_heartbeat.json
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas      4895 Nov 26 09:13 pilotlog.txt
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:13 boinc_mmap_file
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas  15393420 Nov 26 09:13 log.47556137._008740.job.log.1
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:13 wrapper_checkpoint.txt
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas       353 Nov 26 09:13 output.list
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:13 runtime_log
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas  18391040 Nov 26 09:13 result.tar.gz
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 09:13 runtime_log.err
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas       665 Nov 26 09:13 BDzMDmOmVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRBLKDm5xEVln.diag
[2025-11-26 09:13:20] -rw-r--r--. 1 boincer umatlas     21627 Nov 26 09:13 stderr.txt
[2025-11-26 09:13:20] HITS file was successfully produced:
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas 924445349 Nov 26 09:11 shared/HITS.pool.root.1
[2025-11-26 09:13:20]  *** Contents of shared directory: ***
[2025-11-26 09:13:20] total 1322296
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas 410577433 Nov 25 00:13 ATLAS.root_0
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-26 09:13:20] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:13 input.tar.gz
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas 924445349 Nov 26 09:11 HITS.pool.root.1
[2025-11-26 09:13:20] -rw-------. 1 boincer umatlas  18391040 Nov 26 09:13 result.tar.gz
09:13:22 (839418): run_atlas exited; CPU time 250443.533194
09:13:22 (839418): called boinc_finish(0)

</stderr_txt>
]]>

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