Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:23 (1908578): wrapper (7.7.26015): starting
00:10:23 (1908578): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:10:23] Arguments: --nthreads 12
[2025-11-25 00:10:23] Threads: 12
[2025-11-25 00:10:23] Checking for CVMFS
[2025-11-25 00:10:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:10:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:10:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:10:25] 2.13.2.0 6384 32560 289516 153270 0 167 38439138 40960000 11342 16776704 0 34060235 99.780 18499523 35679 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:10:25] CVMFS is ok
[2025-11-25 00:10:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:10:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:10:25] Further information can be found at the LHC@home message board.
[2025-11-25 00:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:10:25] Checking for apptainer binary...
[2025-11-25 00:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:10:25] Running /usr/bin/apptainer --version
[2025-11-25 00:10:25] apptainer version 1.4.4-1.el9
[2025-11-25 00:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:10:25] c-210-33-2.aglt2.org
[2025-11-25 00:10:25] apptainer works
[2025-11-25 00:10:25] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:10:25] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:10:25] Starting ATLAS job with PandaID=6895367358
[2025-11-25 00:10:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:22:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:22:49] 2025-11-26 17:59:26,654 | INFO     | time since job start (132500s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:28,495 | INFO     | monitor loop #7610: job 0:6895367358 is in state 'finished'
[2025-11-26 13:22:49] 2025-11-26 17:59:28,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:22:49] 2025-11-26 17:59:28,699 | INFO     | time since job start (132502s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:30,718 | INFO     | time since job start (132504s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:31,026 | INFO     | monitor loop #7611: job 0:6895367358 is in state 'finished'
[2025-11-26 13:22:49] 2025-11-26 17:59:31,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:22:49] 2025-11-26 17:59:32,671 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 13:22:49] 2025-11-26 17:59:32,675 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2869.568625
[2025-11-26 13:22:49] 2025-11-26 17:59:32,794 | INFO     | time since job start (132506s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:32,796 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895367358/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:22:49] 2025-11-26 17:59:32,797 | INFO     | extracted standard info from prmon json
[2025-11-26 13:22:49] 2025-11-26 17:59:32,798 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:22:49] 2025-11-26 17:59:32,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:22:49] 2025-11-26 17:59:33,158 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:22:49] 2025-11-26 17:59:33,192 | INFO     | sum of square deviations: 3164121038621.504
[2025-11-26 13:22:49] 2025-11-26 17:59:33,583 | INFO     | monitor loop #7612: job 0:6895367358 is in state 'finished'
[2025-11-26 13:22:49] 2025-11-26 17:59:33,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:22:49] 2025-11-26 17:59:34,006 | INFO     | sum of deviations: 13882220338474.002
[2025-11-26 13:22:49] 2025-11-26 17:59:34,039 | INFO     | mean x: 1764113731.3771324
[2025-11-26 13:22:49] 2025-11-26 17:59:34,039 | INFO     | mean y: 3555562.112494237
[2025-11-26 13:22:49] 2025-11-26 17:59:34,039 | INFO     | intersect: -7736292320.500189
[2025-11-26 13:22:49] 2025-11-26 17:59:34,042 | INFO     | chi2: 35.51517210932026
[2025-11-26 13:22:49] 2025-11-26 17:59:34,068 | INFO     | sum of square deviations: 3142294234898.7656
[2025-11-26 13:22:49] 2025-11-26 17:59:34,855 | INFO     | time since job start (132508s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:34,862 | INFO     | sum of deviations: 14807839178610.072
[2025-11-26 13:22:49] 2025-11-26 17:59:34,863 | INFO     | mean x: 1764113578.8941774
[2025-11-26 13:22:49] 2025-11-26 17:59:34,863 | INFO     | mean y: 3562027.9829020333
[2025-11-26 13:22:49] 2025-11-26 17:59:34,863 | INFO     | intersect: -8309698353.22033
[2025-11-26 13:22:49] 2025-11-26 17:59:34,865 | INFO     | chi2: 32.02451524925735
[2025-11-26 13:22:49] 2025-11-26 17:59:34,865 | INFO     | current chi2=32.02451524925735 (change=9.828635630198336 %)
[2025-11-26 13:22:49] 2025-11-26 17:59:34,865 | INFO     | right removable region: 2163
[2025-11-26 13:22:49] 2025-11-26 17:59:34,943 | INFO     | sum of square deviations: 3142284474288.7676
[2025-11-26 13:22:49] 2025-11-26 17:59:35,940 | INFO     | sum of deviations: 12835780213380.602
[2025-11-26 13:22:49] 2025-11-26 17:59:35,940 | INFO     | mean x: 1764113883.8941774
[2025-11-26 13:22:49] 2025-11-26 17:59:35,941 | INFO     | mean y: 3562870.0679297596
[2025-11-26 13:22:49] 2025-11-26 17:59:35,941 | INFO     | intersect: -7202588664.052525
[2025-11-26 13:22:49] 2025-11-26 17:59:35,979 | INFO     | chi2: 31.610617288537302
[2025-11-26 13:22:49] 2025-11-26 17:59:35,979 | INFO     | current chi2=31.610617288537302 (change=10.994047301148473 %)
[2025-11-26 13:22:49] 2025-11-26 17:59:35,979 | INFO     | left removable region: 10
[2025-11-26 13:22:49] 2025-11-26 17:59:36,002 | INFO     | sum of square deviations: 3094609716772.2827
[2025-11-26 13:22:49] 2025-11-26 17:59:36,244 | INFO     | monitor loop #7613: job 0:6895367358 is in state 'finished'
[2025-11-26 13:22:49] 2025-11-26 17:59:36,244 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:22:49] 2025-11-26 17:59:36,922 | INFO     | time since job start (132510s) is within the limit (172800.0s)
[2025-11-26 13:22:49] 2025-11-26 17:59:36,922 | INFO     | 132515s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 13:22:49] 2025-11-26 17:59:36,930 | INFO     | sum of deviations: 12907705361936.248
[2025-11-26 13:22:49] 2025-11-26 17:59:36,931 | INFO     | mean x: 1764113853.4319553
[2025-11-26 13:22:49] 2025-11-26 17:59:36,931 | INFO     | mean y: 3577887.216906642
[2025-11-26 13:22:49] 2025-11-26 17:59:36,931 | INFO     | intersect: -7354591293.729037
[2025-11-26 13:22:49] 2025-11-26 17:59:36,966 | INFO     | chi2: 23.736451075768287
[2025-11-26 13:22:49] 2025-11-26 17:59:36,966 | INFO     | current memory leak: 4.17 B/s (using 2153 data points, chi2=23.74)
[2025-11-26 13:22:49] 2025-11-26 17:59:36,969 | INFO     | could have reported an average CPU frequency of 2894 MHz (75 samples)
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | ..............................
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | . Timing measurements:
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | . get job = 0 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | . initial setup = 4 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | . payload setup = 45 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,001 | INFO     | . stage-in = 0 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,002 | INFO     | . payload execution = 132329 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,002 | INFO     | . stage-out = 25 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,002 | INFO     | . log creation = 7 s
[2025-11-26 13:22:49] 2025-11-26 17:59:37,002 | INFO     | ..............................
[2025-11-26 13:22:49] 2025-11-26 17:59:38,323 | INFO     | 
[2025-11-26 13:22:49] 2025-11-26 17:59:38,323 | INFO     | job summary report
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | --------------------------------------------------
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | PanDA job id: 6895367358
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | task id: 47556137
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | errors: (none)
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | pilot state: finished 
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | transexitcode: 0
[2025-11-26 13:22:49] 2025-11-26 17:59:38,324 | INFO     | exeerrorcode: 0
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | exeerrordiag: 
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | exitcode: 0
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | exitmsg: OK
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | cpuconsumptiontime: 243785 s
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | nevents: 1000
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | neventsw: 0
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | pid: 1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | pgrp: 1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:38,325 | INFO     | corecount: 12
[2025-11-26 13:22:49] 2025-11-26 17:59:38,326 | INFO     | event service: False
[2025-11-26 13:22:49] 2025-11-26 17:59:38,326 | INFO     | sizes: {0: 2284139, 1: 2284167, 2: 2284338, 12: 2284366, 23: 2284394, 29: 2284684, 34: 2284840, 132378: 2371126, 132380: 2371125, 132408: 2380208, 132410: 2380264,
[2025-11-26 13:22:49] 2025-11-26 17:59:38,326 | INFO     | --------------------------------------------------
[2025-11-26 13:22:49] 2025-11-26 17:59:38,326 | INFO     | 
[2025-11-26 13:22:49] 2025-11-26 17:59:38,326 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 13:22:49] 2025-11-26 17:59:38,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | job 6895367358 has completed (purged errors)
[2025-11-26 13:22:49] 2025-11-26 17:59:38,713 | INFO     | overall cleanup function is called
[2025-11-26 13:22:49] 2025-11-26 17:59:39,915 | INFO     | --- collectZombieJob: --- 10, [1924309]
[2025-11-26 13:22:49] 2025-11-26 17:59:39,915 | INFO     | zombie collector waiting for pid 1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:39,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:22:49] 2025-11-26 17:59:39,916 | INFO     | collected zombie processes
[2025-11-26 13:22:49] 2025-11-26 17:59:39,916 | INFO     | will attempt to kill all subprocesses of pid=1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:42,139 | INFO     | process IDs to be killed: [1924309] (in reverse order)
[2025-11-26 13:22:49] 2025-11-26 17:59:42,660 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:22:49] 2025-11-26 17:59:42,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:22:49] 2025-11-26 17:59:42,785 | INFO     | did not find any defunct processes belonging to 1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:42,970 | INFO     | did not find any defunct processes belonging to 1924309
[2025-11-26 13:22:49] 2025-11-26 17:59:43,016 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:22:49] 2025-11-26 17:59:43,017 | INFO     | ready for new job
[2025-11-26 13:22:49] 2025-11-26 17:59:43,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:22:49] 2025-11-26 17:59:43,094 | INFO     | ***************************************
[2025-11-26 13:22:49] 2025-11-26 17:59:43,094 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:22:49] 2025-11-26 17:59:43,094 | INFO     | ***************************************
[2025-11-26 13:22:49] 2025-11-26 17:59:43,094 | INFO     | 
[2025-11-26 13:22:49] 2025-11-26 17:59:43,131 | INFO     | architecture information:
[2025-11-26 13:22:49] 2025-11-26 17:59:43,141 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:22:49] 2025-11-26 17:59:43,304 | INFO     | cat /etc/os-release:
[2025-11-26 13:22:49] NAME="CentOS Linux"
[2025-11-26 13:22:49] VERSION="7 (Core)"
[2025-11-26 13:22:49] ID="centos"
[2025-11-26 13:22:49] ID_LIKE="rhel fedora"
[2025-11-26 13:22:49] VERSION_ID="7"
[2025-11-26 13:22:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:22:49] ANSI_COLOR="0;31"
[2025-11-26 13:22:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:22:49] HOME_URL="https://www.centos.org/"
[2025-11-26 13:22:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:22:49] 
[2025-11-26 13:22:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:22:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:22:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:22:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:22:49] 
[2025-11-26 13:22:49] 2025-11-26 17:59:43,305 | INFO     | ***************************************
[2025-11-26 13:22:49] 2025-11-26 17:59:43,808 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 13:22:49] 2025-11-26 17:59:44,046 | INFO     | sufficient remaining disk space (70169657344 B)
[2025-11-26 13:22:49] 2025-11-26 17:59:44,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:22:49] 2025-11-26 17:59:44,046 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:22:49] 2025-11-26 17:59:44,046 | INFO     | update_server=False
[2025-11-26 13:22:49] 2025-11-26 17:59:44,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:22:49] 2025-11-26 17:59:44,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:22:49] 2025-11-26 17:59:44,077 | INFO     | all job control threads have been joined
[2025-11-26 13:22:49] 2025-11-26 17:59:44,153 | INFO     | all data control threads have been joined
[2025-11-26 13:22:49] 2025-11-26 17:59:44,430 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 13:22:49] 2025-11-26 17:59:44,430 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 13:22:49] 2025-11-26 17:59:44,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:22:49] 2025-11-26 17:59:44,431 | INFO     | will abort loop
[2025-11-26 13:22:49] 2025-11-26 17:59:44,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:22:49] 2025-11-26 17:59:44,617 | INFO     | all payload control threads have been joined
[2025-11-26 13:22:49] 2025-11-26 17:59:45,083 | INFO     | [job] control thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,087 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,094 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,159 | INFO     | [data] control thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,324 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,438 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:22:49] 2025-11-26 17:59:45,626 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,631 | INFO     | [payload] control thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,789 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:45,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:46,013 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:46,132 | INFO     | [job] validate thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:46,138 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:46,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:47,482 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:22:49] 2025-11-26 17:59:48,609 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:22:49] 2025-11-26 18:00:12,754 | INFO     | PID=1912358 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:22:49] 2025-11-26 18:00:12,754 | INFO     | .. there are 11 such processes running
[2025-11-26 13:22:49] 2025-11-26 18:00:12,760 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:22:49] 2025-11-26 18:00:12,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:22:49] 2025-11-26 18:00:12,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:22:49] 2025-11-26 18:00:18,122 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:22:49] 2025-11-26 18:00:18,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173607585600)>', '<ExcThread(monitor, started 140172893087488)>']
[2025-11-26 13:22:49] 2025-11-26 18:00:19,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:22:49] 2025-11-26 18:00:19,816 | INFO     | [monitor] control thread has ended
[2025-11-26 13:22:49] 2025-11-26 18:00:23,893 | INFO     | all workflow threads have been joined
[2025-11-26 13:22:49] 2025-11-26 18:00:23,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:22:49] 2025-11-26 18:00:23,894 | INFO     | traces error code: 0
[2025-11-26 13:22:49] 2025-11-26 18:00:23,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:22:49] 2025-11-26 18:00:25,804 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:22:49] 2025-11-26 18:00:25,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:22:49] 2025-11-26 18:00:25,893 [wrapper] pilotpid: 1912358
[2025-11-26 13:22:49] 2025-11-26 18:00:25,932 [wrapper] Pilot exit status: 0
[2025-11-26 13:22:49] 2025-11-26 18:00:26,088 [wrapper] pandaids: 6895367358
[2025-11-26 13:22:49] 2025-11-26 18:00:26,436 [wrapper] cleanup supervisor_pilot 1294747 1912359
[2025-11-26 13:22:49] 2025-11-26 18:00:26,485 [wrapper] Test setup, not cleaning
[2025-11-26 13:22:49] 2025-11-26 18:00:26,541 [wrapper] apfmon messages muted
[2025-11-26 13:22:49] 2025-11-26 18:00:26,561 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:22:49] 2025-11-26 18:00:26,582 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:22:49]  *** Error codes and diagnostics ***
[2025-11-26 13:22:49]     "exeErrorCode": 0,
[2025-11-26 13:22:49]     "exeErrorDiag": "",
[2025-11-26 13:22:49]     "pilotErrorCode": 0,
[2025-11-26 13:22:49]     "pilotErrorDiag": "",
[2025-11-26 13:22:49]  *** Listing of results directory ***
[2025-11-26 13:22:49] total 1349520
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-26 13:22:49] -rwx------. 1 boincer umatlas     36292 Nov 23 14:13 runpilot2-wrapper.sh
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:13 queuedata.json
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:22:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:10 run_atlas
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:10 job.xml
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas 411284258 Nov 25 00:10 EVNT.47483658._000860.pool.root.1
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-26 13:22:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:10 shared
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:10 input.tar.gz
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:10 boinc_lockfile
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:10 pandaJob.out
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas        57 Nov 25 00:10 setup.sh.local
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas    991801 Nov 25 00:11 agis_schedconf.cvmfs.json
[2025-11-26 13:22:49] drwx------. 5 boincer umatlas      4096 Nov 25 00:11 pilot3
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:14 boinc_task_state.xml
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas 927164194 Nov 26 12:56 HITS.47556137._008463.pool.root.1
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas      1073 Nov 26 12:58 memory_monitor_summary.json
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas   3412146 Nov 26 12:58 log.47556137._008463.job.log.tgz.1
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas      8662 Nov 26 12:59 heartbeat.json
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas        95 Nov 26 13:00 pilot_heartbeat.json
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas      5010 Nov 26 13:00 pilotlog.txt
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas  16356365 Nov 26 13:00 log.47556137._008463.job.log.1
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas       353 Nov 26 13:00 output.list
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:00 runtime_log
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas  19783680 Nov 26 13:00 result.tar.gz
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas      9356 Nov 26 13:00 runtime_log.err
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas       670 Nov 26 13:00 ap5NDmjhUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmI8KKDm5mdCBo.diag
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas      6841 Nov 26 13:22 init_data.xml
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:22 boinc_mmap_file
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:22 wrapper_checkpoint.txt
[2025-11-26 13:22:49] -rw-r--r--. 1 boincer umatlas     21818 Nov 26 13:22 stderr.txt
[2025-11-26 13:22:49] HITS file was successfully produced:
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas 927164194 Nov 26 12:56 shared/HITS.pool.root.1
[2025-11-26 13:22:49]  *** Contents of shared directory: ***
[2025-11-26 13:22:49] total 1327008
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas 411284258 Nov 25 00:10 ATLAS.root_0
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-26 13:22:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:10 input.tar.gz
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas 927164194 Nov 26 12:56 HITS.pool.root.1
[2025-11-26 13:22:49] -rw-------. 1 boincer umatlas  19783680 Nov 26 13:00 result.tar.gz
13:22:51 (1908578): run_atlas exited; CPU time 245148.980555
13:22:51 (1908578): called boinc_finish(0)

</stderr_txt>
]]>

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