Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:31 (683971): wrapper (7.7.26015): starting
00:11:31 (683971): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:11:31] Arguments: --nthreads 8
[2025-11-25 00:11:31] Threads: 8
[2025-11-25 00:11:31] Checking for CVMFS
[2025-11-25 00:11:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:34] 2.13.3.0 7489 28173 382480 153270 1 705 30410651 32935937 22800 16776704 0 184330756 99.646 173689353 41172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:11:34] CVMFS is ok
[2025-11-25 00:11:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:34] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:34] Checking for apptainer binary...
[2025-11-25 00:11:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:34] Running /usr/bin/apptainer --version
[2025-11-25 00:11:34] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:34] c7-13-32.aglt2.org
[2025-11-25 00:11:34] apptainer works
[2025-11-25 00:11:34] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:11:34] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:11:34] Starting ATLAS job with PandaID=6895386748
[2025-11-25 00:11:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:40:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:40:21] 2025-11-26 08:39:30,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:40:21] 2025-11-26 08:39:31,153 | INFO     | time since job start (98853s) is within the limit (172800.0s)
[2025-11-26 03:40:21] 2025-11-26 08:39:32,866 | INFO     | monitor loop #6035: job 0:6895386748 is in state 'finished'
[2025-11-26 03:40:21] 2025-11-26 08:39:32,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:40:21] 2025-11-26 08:39:33,160 | INFO     | time since job start (98855s) is within the limit (172800.0s)
[2025-11-26 03:40:21] 2025-11-26 08:39:35,170 | INFO     | time since job start (98857s) is within the limit (172800.0s)
[2025-11-26 03:40:21] 2025-11-26 08:39:35,371 | INFO     | monitor loop #6036: job 0:6895386748 is in state 'finished'
[2025-11-26 03:40:21] 2025-11-26 08:39:35,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:40:21] 2025-11-26 08:39:37,177 | INFO     | time since job start (98859s) is within the limit (172800.0s)
[2025-11-26 03:40:21] 2025-11-26 08:39:37,887 | INFO     | monitor loop #6037: job 0:6895386748 is in state 'finished'
[2025-11-26 03:40:21] 2025-11-26 08:39:37,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:40:21] 2025-11-26 08:39:39,184 | INFO     | time since job start (98861s) is within the limit (172800.0s)
[2025-11-26 03:40:21] 2025-11-26 08:39:40,435 | INFO     | monitor loop #6038: job 0:6895386748 is in state 'finished'
[2025-11-26 03:40:21] 2025-11-26 08:39:40,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,172 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:40:21] 2025-11-26 08:39:41,195 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.8367187500003
[2025-11-26 03:40:21] 2025-11-26 08:39:41,275 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895386748/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,276 | INFO     | extracted standard info from prmon json
[2025-11-26 03:40:21] 2025-11-26 08:39:41,276 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:40:21] 2025-11-26 08:39:41,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:40:21] 2025-11-26 08:39:41,416 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:40:21] 2025-11-26 08:39:41,418 | INFO     | sum of square deviations: 1315819990770.3052
[2025-11-26 03:40:21] 2025-11-26 08:39:41,660 | INFO     | sum of deviations: 2299770600077.1357
[2025-11-26 03:40:21] 2025-11-26 08:39:41,661 | INFO     | mean x: 1764096922.1463866
[2025-11-26 03:40:21] 2025-11-26 08:39:41,661 | INFO     | mean y: 2859829.1766522545
[2025-11-26 03:40:21] 2025-11-26 08:39:41,661 | INFO     | intersect: -3080402521.0660815
[2025-11-26 03:40:21] 2025-11-26 08:39:41,662 | INFO     | chi2: 31.788489096164565
[2025-11-26 03:40:21] 2025-11-26 08:39:41,664 | INFO     | sum of square deviations: 1303666990179.6982
[2025-11-26 03:40:21] 2025-11-26 08:39:41,782 | INFO     | sum of deviations: 2853327890465.92
[2025-11-26 03:40:21] 2025-11-26 08:39:41,786 | INFO     | mean x: 1764096769.6530359
[2025-11-26 03:40:21] 2025-11-26 08:39:41,786 | INFO     | mean y: 2866773.557001239
[2025-11-26 03:40:21] 2025-11-26 08:39:41,786 | INFO     | intersect: -3858200931.806938
[2025-11-26 03:40:21] 2025-11-26 08:39:41,787 | INFO     | chi2: 28.10128039212286
[2025-11-26 03:40:21] 2025-11-26 08:39:41,788 | INFO     | current chi2=28.10128039212286 (change=11.599194579167918 %)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,788 | INFO     | right removable region: 1613
[2025-11-26 03:40:21] 2025-11-26 08:39:41,789 | INFO     | sum of square deviations: 1303665165978.6138
[2025-11-26 03:40:21] 2025-11-26 08:39:41,863 | INFO     | sum of deviations: 1847032734151.9363
[2025-11-26 03:40:21] 2025-11-26 08:39:41,863 | INFO     | mean x: 1764097074.6511772
[2025-11-26 03:40:21] 2025-11-26 08:39:41,863 | INFO     | mean y: 2865505.317843866
[2025-11-26 03:40:21] 2025-11-26 08:39:41,863 | INFO     | intersect: -2496507131.256729
[2025-11-26 03:40:21] 2025-11-26 08:39:41,865 | INFO     | chi2: 29.55889849961502
[2025-11-26 03:40:21] 2025-11-26 08:39:41,865 | INFO     | current chi2=29.55889849961502 (change=7.013830037044939 %)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,865 | INFO     | left removable region: 10
[2025-11-26 03:40:21] 2025-11-26 08:39:41,866 | INFO     | sum of square deviations: 1277191447188.4312
[2025-11-26 03:40:21] 2025-11-26 08:39:41,947 | INFO     | sum of deviations: 2350342533818.3203
[2025-11-26 03:40:21] 2025-11-26 08:39:41,947 | INFO     | mean x: 1764097044.1590767
[2025-11-26 03:40:21] 2025-11-26 08:39:41,947 | INFO     | mean y: 2875603.4379288834
[2025-11-26 03:40:21] 2025-11-26 08:39:41,947 | INFO     | intersect: -3243491513.87846
[2025-11-26 03:40:21] 2025-11-26 08:39:41,949 | INFO     | chi2: 25.162172228965147
[2025-11-26 03:40:21] 2025-11-26 08:39:41,949 | INFO     | current memory leak: 1.84 B/s (using 1603 data points, chi2=25.16)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,949 | INFO     | could have reported an average CPU frequency of 3290 MHz (57 samples)
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | ..............................
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . Timing measurements:
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . get job = 0 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . initial setup = 3 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . payload setup = 13 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . stage-in = 0 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . payload execution = 98754 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . stage-out = 11 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | . log creation = 4 s
[2025-11-26 03:40:21] 2025-11-26 08:39:41,950 | INFO     | ..............................
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | 
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | job summary report
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | --------------------------------------------------
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | PanDA job id: 6895386748
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | task id: 47556149
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | errors: (none)
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | pilot state: finished 
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | transexitcode: 0
[2025-11-26 03:40:21] 2025-11-26 08:39:42,169 | INFO     | exeerrorcode: 0
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | exeerrordiag: 
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | exitcode: 0
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | exitmsg: OK
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | cpuconsumptiontime: 206720 s
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | nevents: 1000
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | neventsw: 0
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | pid: 712125
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | pgrp: 712125
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | corecount: 8
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | event service: False
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | sizes: {0: 2284138, 1: 2284337, 11: 2284599, 12: 2284627, 98773: 2355261, 98785: 2364260, 98786: 2364444, 98841: 2364690}
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | --------------------------------------------------
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | 
[2025-11-26 03:40:21] 2025-11-26 08:39:42,170 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 03:40:21] 2025-11-26 08:39:42,459 | INFO     | PID=688789 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:40:21] 2025-11-26 08:39:42,460 | INFO     | .. there are 43 such processes running
[2025-11-26 03:40:21] 2025-11-26 08:39:42,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:40:21] 2025-11-26 08:39:42,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:40:21] 2025-11-26 08:39:42,505 | INFO     | job 6895386748 has completed (purged errors)
[2025-11-26 03:40:21] 2025-11-26 08:39:42,505 | INFO     | overall cleanup function is called
[2025-11-26 03:40:21] 2025-11-26 08:39:43,534 | INFO     | --- collectZombieJob: --- 10, [712125]
[2025-11-26 03:40:21] 2025-11-26 08:39:43,534 | INFO     | zombie collector waiting for pid 712125
[2025-11-26 03:40:21] 2025-11-26 08:39:43,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:40:21] 2025-11-26 08:39:43,534 | INFO     | collected zombie processes
[2025-11-26 03:40:21] 2025-11-26 08:39:43,535 | INFO     | will attempt to kill all subprocesses of pid=712125
[2025-11-26 03:40:21] 2025-11-26 08:39:44,959 | INFO     | process IDs to be killed: [712125] (in reverse order)
[2025-11-26 03:40:21] 2025-11-26 08:39:45,659 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:40:21] 2025-11-26 08:39:45,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:40:21] 2025-11-26 08:39:45,686 | INFO     | did not find any defunct processes belonging to 712125
[2025-11-26 03:40:21] 2025-11-26 08:39:45,731 | INFO     | did not find any defunct processes belonging to 712125
[2025-11-26 03:40:21] 2025-11-26 08:39:45,741 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:40:21] 2025-11-26 08:39:45,741 | INFO     | ready for new job
[2025-11-26 03:40:21] 2025-11-26 08:39:45,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:40:21] 2025-11-26 08:39:45,762 | INFO     | ***************************************
[2025-11-26 03:40:21] 2025-11-26 08:39:45,762 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:40:21] 2025-11-26 08:39:45,762 | INFO     | ***************************************
[2025-11-26 03:40:21] 2025-11-26 08:39:45,764 | INFO     | 
[2025-11-26 03:40:21] 2025-11-26 08:39:45,774 | INFO     | architecture information:
[2025-11-26 03:40:21] 2025-11-26 08:39:45,780 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:40:21] 2025-11-26 08:39:45,860 | INFO     | cat /etc/os-release:
[2025-11-26 03:40:21] NAME="CentOS Linux"
[2025-11-26 03:40:21] VERSION="7 (Core)"
[2025-11-26 03:40:21] ID="centos"
[2025-11-26 03:40:21] ID_LIKE="rhel fedora"
[2025-11-26 03:40:21] VERSION_ID="7"
[2025-11-26 03:40:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:40:21] ANSI_COLOR="0;31"
[2025-11-26 03:40:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:40:21] HOME_URL="https://www.centos.org/"
[2025-11-26 03:40:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:40:21] 
[2025-11-26 03:40:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:40:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:40:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:40:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:40:21] 
[2025-11-26 03:40:21] 2025-11-26 08:39:45,860 | INFO     | ***************************************
[2025-11-26 03:40:21] 2025-11-26 08:39:46,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 03:40:21] 2025-11-26 08:39:46,557 | INFO     | sufficient remaining disk space (88609914880 B)
[2025-11-26 03:40:21] 2025-11-26 08:39:46,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:40:21] 2025-11-26 08:39:46,558 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:40:21] 2025-11-26 08:39:46,558 | INFO     | update_server=False
[2025-11-26 03:40:21] 2025-11-26 08:39:46,559 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:40:21] 2025-11-26 08:39:46,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:40:21] 2025-11-26 08:39:46,559 | INFO     | aborting loop
[2025-11-26 03:40:21] 2025-11-26 08:39:46,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:40:21] 2025-11-26 08:39:47,053 | INFO     | all data control threads have been joined
[2025-11-26 03:40:21] 2025-11-26 08:39:47,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:40:21] 2025-11-26 08:39:47,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:40:21] 2025-11-26 08:39:47,559 | INFO     | all payload control threads have been joined
[2025-11-26 03:40:21] 2025-11-26 08:39:47,564 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:47,565 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:47,573 | INFO     | all job control threads have been joined
[2025-11-26 03:40:21] 2025-11-26 08:39:47,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:47,855 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:47,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:47,925 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,059 | INFO     | [data] control thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,080 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,080 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,204 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,337 | INFO     | [job] validate thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,564 | INFO     | [payload] control thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,579 | INFO     | [job] control thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:48,831 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:49,070 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:51,432 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:40:21] 2025-11-26 08:39:55,951 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:40:21] 2025-11-26 08:39:57,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440722364224)>', '<ExcThread(monitor, started 140439860541184)>']
[2025-11-26 03:40:21] 2025-11-26 08:40:02,433 | INFO     | all workflow threads have been joined
[2025-11-26 03:40:21] 2025-11-26 08:40:02,433 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:40:21] 2025-11-26 08:40:02,434 | INFO     | traces error code: 0
[2025-11-26 03:40:21] 2025-11-26 08:40:02,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:40:21] 2025-11-26 08:40:18,501 | INFO     | PID=688789 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:40:21] 2025-11-26 08:40:18,502 | INFO     | .. there are 43 such processes running
[2025-11-26 03:40:21] 2025-11-26 08:40:18,502 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:40:21] 2025-11-26 08:40:18,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:40:21] 2025-11-26 08:40:18,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:40:21] 2025-11-26 08:40:18,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:40:21] 2025-11-26 08:40:18,503 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 03:40:21] 2025-11-26 08:40:18,503 | INFO     | [monitor] control thread has ended
[2025-11-26 03:40:21] 2025-11-26 08:40:18,877 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:40:21] 2025-11-26 08:40:19,121 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:40:21] 2025-11-26 08:40:19,185 [wrapper] pilotpid: 688789
[2025-11-26 03:40:21] 2025-11-26 08:40:19,339 [wrapper] Pilot exit status: 0
[2025-11-26 03:40:21] 2025-11-26 08:40:19,666 [wrapper] pandaids: 6895386748
[2025-11-26 03:40:21] 2025-11-26 08:40:19,898 [wrapper] cleanup supervisor_pilot 2489581 688790
[2025-11-26 03:40:21] 2025-11-26 08:40:19,902 [wrapper] Test setup, not cleaning
[2025-11-26 03:40:21] 2025-11-26 08:40:19,905 [wrapper] apfmon messages muted
[2025-11-26 03:40:21] 2025-11-26 08:40:19,907 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:40:21] 2025-11-26 08:40:19,909 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:40:21]  *** Error codes and diagnostics ***
[2025-11-26 03:40:21]     "exeErrorCode": 0,
[2025-11-26 03:40:21]     "exeErrorDiag": "",
[2025-11-26 03:40:21]     "pilotErrorCode": 0,
[2025-11-26 03:40:21]     "pilotErrorDiag": "",
[2025-11-26 03:40:21]  *** Listing of results directory ***
[2025-11-26 03:40:21] total 1330544
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:01 queuedata.json
[2025-11-26 03:40:21] -rwx------. 1 boincer umatlas     36292 Nov 24 01:02 runpilot2-wrapper.sh
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:40:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:11 run_atlas
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:11 job.xml
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:11 EVNT.47483658._001254.pool.root.1
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-26 03:40:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:11 input.tar.gz
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:11 pandaJob.out
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas    991801 Nov 25 00:11 agis_schedconf.cvmfs.json
[2025-11-26 03:40:21] drwx------. 5 boincer umatlas      4096 Nov 25 00:11 pilot3
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:40 boinc_task_state.xml
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas 918761245 Nov 26 03:36 HITS.47556149._002408.pool.root.1
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas      1049 Nov 26 03:38 memory_monitor_summary.json
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas      6903 Nov 26 03:38 init_data.xml
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas   2601453 Nov 26 03:38 log.47556149._002408.job.log.tgz.1
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas      8594 Nov 26 03:39 heartbeat.json
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas       892 Nov 26 03:40 pilotlog.txt
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas        95 Nov 26 03:40 pilot_heartbeat.json
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:40 boinc_mmap_file
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:40 wrapper_checkpoint.txt
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas  12585428 Nov 26 03:40 log.47556149._002408.job.log.1
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas       353 Nov 26 03:40 output.list
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:40 runtime_log
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas  15206400 Nov 26 03:40 result.tar.gz
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 03:40 runtime_log.err
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas       661 Nov 26 03:40 hWzLDmMpeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8ULKDmpwY6bn.diag
[2025-11-26 03:40:21] -rw-r--r--. 1 boincer umatlas     21819 Nov 26 03:40 stderr.txt
[2025-11-26 03:40:21] HITS file was successfully produced:
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas 918761245 Nov 26 03:36 shared/HITS.pool.root.1
[2025-11-26 03:40:21]  *** Contents of shared directory: ***
[2025-11-26 03:40:21] total 1312512
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:11 ATLAS.root_0
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-26 03:40:21] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:11 input.tar.gz
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas 918761245 Nov 26 03:36 HITS.pool.root.1
[2025-11-26 03:40:21] -rw-------. 1 boincer umatlas  15206400 Nov 26 03:40 result.tar.gz
03:40:22 (683971): run_atlas exited; CPU time 206642.113013
03:40:22 (683971): called boinc_finish(0)

</stderr_txt>
]]>

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