Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:14 (1851463): wrapper (7.7.26015): starting
00:11:14 (1851463): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:11:14] Arguments: --nthreads 9
[2025-11-25 00:11:14] Threads: 9
[2025-11-25 00:11:14] Checking for CVMFS
[2025-11-25 00:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:16] 2.13.3.0 11830 28038 360144 153271 3 66 29228794 32935937 41530 16776704 0 153282282 99.561 163960249 32865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:11:16] CVMFS is ok
[2025-11-25 00:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:16] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:16] Checking for apptainer binary...
[2025-11-25 00:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:16] Running /usr/bin/apptainer --version
[2025-11-25 00:11:16] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:17] c6-8-25-1.aglt2.org
[2025-11-25 00:11:17] apptainer works
[2025-11-25 00:11:17] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:11:17] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:11:17] Starting ATLAS job with PandaID=6895386741
[2025-11-25 00:11:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:37:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:37:57] 2025-11-26 00:37:16,551 | INFO     | time since job start (69893s) is within the limit (172800.0s)
[2025-11-25 19:37:57] 2025-11-26 00:37:18,558 | INFO     | time since job start (69895s) is within the limit (172800.0s)
[2025-11-25 19:37:57] 2025-11-26 00:37:18,559 | INFO     | 69902s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 19:37:57] 2025-11-26 00:37:18,851 | INFO     | monitor loop #3824: job 0:6895386741 is in state 'finished'
[2025-11-25 19:37:57] 2025-11-26 00:37:18,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:37:57] 2025-11-26 00:37:20,565 | INFO     | time since job start (69897s) is within the limit (172800.0s)
[2025-11-25 19:37:57] 2025-11-26 00:37:21,356 | INFO     | monitor loop #3825: job 0:6895386741 is in state 'finished'
[2025-11-25 19:37:57] 2025-11-26 00:37:21,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,176 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 19:37:57] 2025-11-26 00:37:23,183 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2590.889885416667
[2025-11-25 19:37:57] 2025-11-26 00:37:23,303 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386741/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,304 | INFO     | extracted standard info from prmon json
[2025-11-25 19:37:57] 2025-11-26 00:37:23,304 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:37:57] 2025-11-26 00:37:23,304 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:37:57] 2025-11-26 00:37:23,323 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:37:57] 2025-11-26 00:37:23,325 | INFO     | sum of square deviations: 462929256701.43335
[2025-11-25 19:37:57] 2025-11-26 00:37:23,359 | INFO     | sum of deviations: 2797575862083.807
[2025-11-25 19:37:57] 2025-11-26 00:37:23,359 | INFO     | mean x: 1764082526.7480314
[2025-11-25 19:37:57] 2025-11-26 00:37:23,359 | INFO     | mean y: 3020904.023622047
[2025-11-25 19:37:57] 2025-11-26 00:37:23,359 | INFO     | intersect: -10657689396.982557
[2025-11-25 19:37:57] 2025-11-26 00:37:23,361 | INFO     | chi2: 13.435958894822198
[2025-11-25 19:37:57] 2025-11-26 00:37:23,362 | INFO     | sum of square deviations: 456881184158.0081
[2025-11-25 19:37:57] 2025-11-26 00:37:23,460 | INFO     | sum of deviations: 3196482014990.2275
[2025-11-25 19:37:57] 2025-11-26 00:37:23,461 | INFO     | mean x: 1764082374.2732866
[2025-11-25 19:37:57] 2025-11-26 00:37:23,461 | INFO     | mean y: 3030958.642355009
[2025-11-25 19:37:57] 2025-11-26 00:37:23,461 | INFO     | intersect: -12339034720.244682
[2025-11-25 19:37:57] 2025-11-26 00:37:23,462 | INFO     | chi2: 10.297282691032061
[2025-11-25 19:37:57] 2025-11-26 00:37:23,462 | INFO     | current chi2=10.297282691032061 (change=23.360269470604628 %)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,462 | INFO     | right removable region: 1137
[2025-11-25 19:37:57] 2025-11-26 00:37:23,464 | INFO     | sum of square deviations: 456877176458.00745
[2025-11-25 19:37:57] 2025-11-26 00:37:23,510 | INFO     | sum of deviations: 2314446322559.259
[2025-11-25 19:37:57] 2025-11-26 00:37:23,514 | INFO     | mean x: 1764082679.2732866
[2025-11-25 19:37:57] 2025-11-26 00:37:23,515 | INFO     | mean y: 3033078.6036906852
[2025-11-25 19:37:57] 2025-11-26 00:37:23,515 | INFO     | intersect: -8933448934.76256
[2025-11-25 19:37:57] 2025-11-26 00:37:23,516 | INFO     | chi2: 9.278000961089528
[2025-11-25 19:37:57] 2025-11-26 00:37:23,517 | INFO     | current chi2=9.278000961089528 (change=30.94649191979158 %)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,518 | INFO     | sum of square deviations: 450878165805.30963
[2025-11-25 19:37:57] 2025-11-26 00:37:23,598 | INFO     | sum of deviations: 2029333726802.6924
[2025-11-25 19:37:57] 2025-11-26 00:37:23,599 | INFO     | mean x: 1764082831.7969992
[2025-11-25 19:37:57] 2025-11-26 00:37:23,599 | INFO     | mean y: 3040322.498676081
[2025-11-25 19:37:57] 2025-11-26 00:37:23,599 | INFO     | intersect: -7936826938.638708
[2025-11-25 19:37:57] 2025-11-26 00:37:23,605 | INFO     | chi2: 7.848768030550012
[2025-11-25 19:37:57] 2025-11-26 00:37:23,605 | INFO     | current chi2=7.848768030550012 (change=15.404535271482441 %)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,605 | INFO     | left removable region: 20
[2025-11-25 19:37:57] 2025-11-26 00:37:23,606 | INFO     | sum of square deviations: 432044719389.87805
[2025-11-25 19:37:57] 2025-11-26 00:37:23,677 | INFO     | sum of deviations: 2304449767562.9604
[2025-11-25 19:37:57] 2025-11-26 00:37:23,678 | INFO     | mean x: 1764082953.8012533
[2025-11-25 19:37:57] 2025-11-26 00:37:23,678 | INFO     | mean y: 3057786.8827215754
[2025-11-25 19:37:57] 2025-11-26 00:37:23,678 | INFO     | intersect: -9406247246.609882
[2025-11-25 19:37:57] 2025-11-26 00:37:23,679 | INFO     | chi2: 3.8931837706304693
[2025-11-25 19:37:57] 2025-11-26 00:37:23,684 | INFO     | current memory leak: 5.33 B/s (using 1117 data points, chi2=3.89)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,685 | INFO     | could have reported an average CPU frequency of 2588 MHz (41 samples)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,685 | INFO     | ..............................
[2025-11-25 19:37:57] 2025-11-26 00:37:23,685 | INFO     | . Timing measurements:
[2025-11-25 19:37:57] 2025-11-26 00:37:23,685 | INFO     | . get job = 0 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . initial setup = 6 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . payload setup = 45 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . stage-in = 0 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . payload execution = 69743 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . stage-out = 8 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | . log creation = 2 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,686 | INFO     | ..............................
[2025-11-25 19:37:57] 2025-11-26 00:37:23,827 | INFO     | PID=1863048 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:37:57] 2025-11-26 00:37:23,828 | INFO     | .. there are 51 such processes running
[2025-11-25 19:37:57] 2025-11-26 00:37:23,979 | INFO     | 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,979 | INFO     | job summary report
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | --------------------------------------------------
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | PanDA job id: 6895386741
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | task id: 47556149
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | errors: (none)
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | pilot state: finished 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | transexitcode: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | exeerrorcode: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | exeerrordiag: 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | exitcode: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | exitmsg: OK
[2025-11-25 19:37:57] 2025-11-26 00:37:23,980 | INFO     | cpuconsumptiontime: 259328 s
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | nevents: 1000
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | neventsw: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | pid: 1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | pgrp: 1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | corecount: 9
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | event service: False
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | sizes: {0: 2283475, 1: 2284160, 2: 2284160, 3: 2284387, 14: 2284387, 25: 2284415, 32: 2284833, 36: 2284861, 69793: 2340885, 69803: 2349884, 69805: 2349940, 69833: 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | --------------------------------------------------
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | 
[2025-11-25 19:37:57] 2025-11-26 00:37:23,981 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 19:37:57] 2025-11-26 00:37:24,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:37:57] 2025-11-26 00:37:24,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,042 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:37:57] 2025-11-26 00:37:24,043 | INFO     | job 6895386741 has completed (purged errors)
[2025-11-25 19:37:57] 2025-11-26 00:37:24,043 | INFO     | overall cleanup function is called
[2025-11-25 19:37:57] 2025-11-26 00:37:25,075 | INFO     | --- collectZombieJob: --- 10, [1886602]
[2025-11-25 19:37:57] 2025-11-26 00:37:25,076 | INFO     | zombie collector waiting for pid 1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:25,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:37:57] 2025-11-26 00:37:25,076 | INFO     | collected zombie processes
[2025-11-25 19:37:57] 2025-11-26 00:37:25,076 | INFO     | will attempt to kill all subprocesses of pid=1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:26,981 | INFO     | process IDs to be killed: [1886602] (in reverse order)
[2025-11-25 19:37:57] 2025-11-26 00:37:27,215 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:37:57] 2025-11-26 00:37:27,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:37:57] 2025-11-26 00:37:27,238 | INFO     | did not find any defunct processes belonging to 1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:27,260 | INFO     | did not find any defunct processes belonging to 1886602
[2025-11-25 19:37:57] 2025-11-26 00:37:27,261 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:37:57] 2025-11-26 00:37:27,261 | INFO     | ready for new job
[2025-11-25 19:37:57] 2025-11-26 00:37:27,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:37:57] 2025-11-26 00:37:27,267 | INFO     | ***************************************
[2025-11-25 19:37:57] 2025-11-26 00:37:27,267 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:37:57] 2025-11-26 00:37:27,267 | INFO     | ***************************************
[2025-11-25 19:37:57] 2025-11-26 00:37:27,267 | INFO     | 
[2025-11-25 19:37:57] 2025-11-26 00:37:27,273 | INFO     | architecture information:
[2025-11-25 19:37:57] 2025-11-26 00:37:27,277 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:37:57] 2025-11-26 00:37:27,362 | INFO     | cat /etc/os-release:
[2025-11-25 19:37:57] NAME="CentOS Linux"
[2025-11-25 19:37:57] VERSION="7 (Core)"
[2025-11-25 19:37:57] ID="centos"
[2025-11-25 19:37:57] ID_LIKE="rhel fedora"
[2025-11-25 19:37:57] VERSION_ID="7"
[2025-11-25 19:37:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:37:57] ANSI_COLOR="0;31"
[2025-11-25 19:37:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:37:57] HOME_URL="https://www.centos.org/"
[2025-11-25 19:37:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:37:57] 
[2025-11-25 19:37:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:37:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:37:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:37:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:37:57] 
[2025-11-25 19:37:57] 2025-11-26 00:37:27,362 | INFO     | ***************************************
[2025-11-25 19:37:57] 2025-11-26 00:37:27,899 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 19:37:57] 2025-11-26 00:37:27,930 | INFO     | sufficient remaining disk space (69081235456 B)
[2025-11-25 19:37:57] 2025-11-26 00:37:27,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:37:57] 2025-11-26 00:37:27,930 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:37:57] 2025-11-26 00:37:27,930 | INFO     | update_server=False
[2025-11-25 19:37:57] 2025-11-26 00:37:27,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:37:57] 2025-11-26 00:37:27,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:37:57] 2025-11-26 00:37:27,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:37:57] 2025-11-26 00:37:27,954 | INFO     | aborting loop
[2025-11-25 19:37:57] 2025-11-26 00:37:28,133 | INFO     | all data control threads have been joined
[2025-11-25 19:37:57] 2025-11-26 00:37:28,940 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:28,959 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:28,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:37:57] 2025-11-26 00:37:29,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,029 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:37:57] 2025-11-26 00:37:29,063 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,136 | INFO     | all payload control threads have been joined
[2025-11-25 19:37:57] 2025-11-26 00:37:29,140 | INFO     | [data] control thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,272 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:37:57] 2025-11-26 00:37:29,338 | INFO     | all job control threads have been joined
[2025-11-25 19:37:57] 2025-11-26 00:37:29,682 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,867 | INFO     | [job] validate thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,868 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,949 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:29,991 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:30,044 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:30,142 | INFO     | [payload] control thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:30,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:30,344 | INFO     | [job] control thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:32,997 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:37:57] 2025-11-26 00:37:35,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955499001664)>', '<ExcThread(monitor, started 139954839602944)>']
[2025-11-25 19:37:57] 2025-11-26 00:37:40,103 | INFO     | all workflow threads have been joined
[2025-11-25 19:37:57] 2025-11-26 00:37:40,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:37:57] 2025-11-26 00:37:40,105 | INFO     | traces error code: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:40,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:37:57] 2025-11-26 00:37:56,692 | INFO     | PID=1863048 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | INFO     | .. there are 51 such processes running
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:37:57] 2025-11-26 00:37:56,693 | INFO     | [monitor] control thread has ended
[2025-11-25 19:37:57] 2025-11-26 00:37:57,012 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:37:57] 2025-11-26 00:37:57,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:37:57] 2025-11-26 00:37:57,049 [wrapper] pilotpid: 1863048
[2025-11-25 19:37:57] 2025-11-26 00:37:57,053 [wrapper] Pilot exit status: 0
[2025-11-25 19:37:57] 2025-11-26 00:37:57,089 [wrapper] pandaids: 6895386741
[2025-11-25 19:37:57] 2025-11-26 00:37:57,321 [wrapper] cleanup supervisor_pilot 2570504 1863049
[2025-11-25 19:37:57] 2025-11-26 00:37:57,352 [wrapper] Test setup, not cleaning
[2025-11-25 19:37:57] 2025-11-26 00:37:57,377 [wrapper] apfmon messages muted
[2025-11-25 19:37:57] 2025-11-26 00:37:57,402 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:37:57] 2025-11-26 00:37:57,421 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:37:57]  *** Error codes and diagnostics ***
[2025-11-25 19:37:57]     "exeErrorCode": 0,
[2025-11-25 19:37:57]     "exeErrorDiag": "",
[2025-11-25 19:37:57]     "pilotErrorCode": 0,
[2025-11-25 19:37:57]     "pilotErrorDiag": "",
[2025-11-25 19:37:57]  *** Listing of results directory ***
[2025-11-25 19:37:57] total 1315964
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:01 queuedata.json
[2025-11-25 19:37:57] -rwx------. 1 boincer umatlas     36292 Nov 24 01:02 runpilot2-wrapper.sh
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:37:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:11 run_atlas
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:11 job.xml
[2025-11-25 19:37:57] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:11 EVNT.47483658._001254.pool.root.1
[2025-11-25 19:37:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 19:37:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-25 19:37:57] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:11 input.tar.gz
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 00:11 pandaJob.out
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas    991801 Nov 25 00:12 agis_schedconf.cvmfs.json
[2025-11-25 19:37:57] drwx------. 5 boincer umatlas      4096 Nov 25 00:12 pilot3
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 19:17 boinc_task_state.xml
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas      6878 Nov 25 19:27 init_data.xml
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas 912863220 Nov 25 19:35 HITS.47556149._002401.pool.root.1
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas      1069 Nov 25 19:36 memory_monitor_summary.json
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas   2332169 Nov 25 19:36 log.47556149._002401.job.log.tgz.1
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas        95 Nov 25 19:37 pilot_heartbeat.json
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas      8645 Nov 25 19:37 heartbeat.json
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas       823 Nov 25 19:37 pilotlog.txt
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 19:37 wrapper_checkpoint.txt
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:37 boinc_mmap_file
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas   8339615 Nov 25 19:37 log.47556149._002401.job.log.1
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas       353 Nov 25 19:37 output.list
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:37 runtime_log
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas  10690560 Nov 25 19:37 result.tar.gz
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 19:37 runtime_log.err
[2025-11-25 19:37:57] -rw-------. 1 boincer umatlas       665 Nov 25 19:37 0LhLDmMpeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1ULKDmZsP31m.diag
[2025-11-25 19:37:57] -rw-r--r--. 1 boincer umatlas     21686 Nov 25 19:37 stderr.txt
[2025-11-25 19:37:58] HITS file was successfully produced:
[2025-11-25 19:37:58] -rw-------. 1 boincer umatlas 912863220 Nov 25 19:35 shared/HITS.pool.root.1
[2025-11-25 19:37:58]  *** Contents of shared directory: ***
[2025-11-25 19:37:58] total 1302340
[2025-11-25 19:37:58] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:11 ATLAS.root_0
[2025-11-25 19:37:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 19:37:58] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:11 input.tar.gz
[2025-11-25 19:37:58] -rw-------. 1 boincer umatlas 912863220 Nov 25 19:35 HITS.pool.root.1
[2025-11-25 19:37:58] -rw-------. 1 boincer umatlas  10690560 Nov 25 19:37 result.tar.gz
19:37:59 (1851463): run_atlas exited; CPU time 262295.916211
19:37:59 (1851463): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN